| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is hisA
Identifier: 103488622
GI number: 103488622
Start: 3298441
End: 3299175
Strand: Reverse
Name: hisA
Synonym: Sala_3147
Alternate gene names: 103488622
Gene position: 3299175-3298441 (Counterclockwise)
Preceding gene: 103488623
Following gene: 103488621
Centisome position: 98.63
GC content: 71.16
Gene sequence:
>735_bases TTGGCGGCCCTGACCATCTTCCCCGCGATCGACCTCAAGGCCGGACAGGTGGTGCGGCTGGCCGAGGGCGATATGGACCG CGCGACCGTCTATGGCGACGATCCGGCGGCGCAGGCGCGGCGGTTCGCGGATGCAGGCGCGACGCACCTGCATGTCGTCG ATCTCGACGGCGCCTTTGCGGGGGCGAGCGTCAACGGCGCGGCGGTCGAAAGCATCATCGCCGCCTTTCCGGGCCAGGTG CAGGTCGGCGGGGGCATCCGCGACCGCGCGGGGGTCGATCGCTGGCTGGCGCTCGGCGTCGCGCGGGTGATTATCGGCAC CGCGGCGCTCAAAGACCCGGAGTTCGTAAAGTCGGCGGCGCGCGACCTGCCCGGCCGGATCGTCGTCGGCGTCGATGCGC GCGATGGCATGGTCGCGACCGAGGGCTGGGCCGATGTATCGGACGTGCGGGTCGAAGATCTGGCGCGCCGCTTCGAGGAT GCGGGCGTCGCGGCGCTGCTGTTCACCGATGTCGGGCGCGACGGGCTGCTGAAAGGCTGCAATGTCGCGGCGACGGTGGC GCTGGCGGGGGTCGTCGATATTCCGGTGATCGCGAGCGGCGGGGTTGCGGGGATCGAGGACATCCACGCACTGCGGCCCC ATGTCGCCGATGGCATCGAGGGGGTGATTACGGGGCGCGCGCTCTATGACGGGCGGCTCGATCTGGCCGAGGCGATTGCG GCGGGTGCGGCATGA
Upstream 100 bases:
>100_bases CCTTCACCGCCGCCGTGGCGAAGGACAATGTCGTGGGTGTCCAGTTTCATCCCGAAAAAAGCCAGGCCTATGGCCTCGCG ACGCTCGAAAGGTTCCTCGC
Downstream 100 bases:
>100_bases AACATGCCTCCCTCCCCGTTCGTGTCGAGCGAAGTCGAGACACCTCGACGGACAGCGCCATGCTGCCGGGTGTCTCGATT TCGCTCGACACGAACGGATT
Product: 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Products: NA
Alternate protein names: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
Number of amino acids: Translated: 244; Mature: 243
Protein sequence:
>244_residues MAALTIFPAIDLKAGQVVRLAEGDMDRATVYGDDPAAQARRFADAGATHLHVVDLDGAFAGASVNGAAVESIIAAFPGQV QVGGGIRDRAGVDRWLALGVARVIIGTAALKDPEFVKSAARDLPGRIVVGVDARDGMVATEGWADVSDVRVEDLARRFED AGVAALLFTDVGRDGLLKGCNVAATVALAGVVDIPVIASGGVAGIEDIHALRPHVADGIEGVITGRALYDGRLDLAEAIA AGAA
Sequences:
>Translated_244_residues MAALTIFPAIDLKAGQVVRLAEGDMDRATVYGDDPAAQARRFADAGATHLHVVDLDGAFAGASVNGAAVESIIAAFPGQV QVGGGIRDRAGVDRWLALGVARVIIGTAALKDPEFVKSAARDLPGRIVVGVDARDGMVATEGWADVSDVRVEDLARRFED AGVAALLFTDVGRDGLLKGCNVAATVALAGVVDIPVIASGGVAGIEDIHALRPHVADGIEGVITGRALYDGRLDLAEAIA AGAA >Mature_243_residues AALTIFPAIDLKAGQVVRLAEGDMDRATVYGDDPAAQARRFADAGATHLHVVDLDGAFAGASVNGAAVESIIAAFPGQVQ VGGGIRDRAGVDRWLALGVARVIIGTAALKDPEFVKSAARDLPGRIVVGVDARDGMVATEGWADVSDVRVEDLARRFEDA GVAALLFTDVGRDGLLKGCNVAATVALAGVVDIPVIASGGVAGIEDIHALRPHVADGIEGVITGRALYDGRLDLAEAIAA GAA
Specific function: Histidine biosynthesis; fourth step. [C]
COG id: COG0106
COG function: function code E; Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the hisA/hisF family
Homologues:
Organism=Escherichia coli, GI87082028, Length=243, Percent_Identity=37.4485596707819, Blast_Score=134, Evalue=5e-33,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): HIS4_SPHAL (Q1GNC2)
Other databases:
- EMBL: CP000356 - RefSeq: YP_618183.1 - ProteinModelPortal: Q1GNC2 - SMR: Q1GNC2 - GeneID: 4082483 - GenomeReviews: CP000356_GR - KEGG: sal:Sala_3147 - NMPDR: fig|317655.9.peg.2996 - HOGENOM: HBG541613 - OMA: SIIYTDI - ProtClustDB: PRK00748 - BioCyc: SALA317655:SALA_3147-MONOMER - BRENDA: 5.3.1.16 - GO: GO:0005737 - HAMAP: MF_01014 - InterPro: IPR013785 - InterPro: IPR006062 - InterPro: IPR006063 - InterPro: IPR023016 - InterPro: IPR011060 - Gene3D: G3DSA:3.20.20.70 - TIGRFAMs: TIGR00007
Pfam domain/function: PF00977 His_biosynth; SSF51366 RibP_bind_barrel
EC number: =5.3.1.16
Molecular weight: Translated: 24822; Mature: 24691
Theoretical pI: Translated: 4.48; Mature: 4.48
Prosite motif: NA
Important sites: ACT_SITE 11-11 ACT_SITE 132-132
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAALTIFPAIDLKAGQVVRLAEGDMDRATVYGDDPAAQARRFADAGATHLHVVDLDGAFA CCEEEEEEEEECCCCCEEEECCCCCCCEEEECCCHHHHHHHHHCCCCCEEEEEECCCCCC GASVNGAAVESIIAAFPGQVQVGGGIRDRAGVDRWLALGVARVIIGTAALKDPEFVKSAA CCCCCHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH RDLPGRIVVGVDARDGMVATEGWADVSDVRVEDLARRFEDAGVAALLFTDVGRDGLLKGC HCCCCEEEEEECCCCCEEEECCCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCC NVAATVALAGVVDIPVIASGGVAGIEDIHALRPHVADGIEGVITGRALYDGRLDLAEAIA CHHHHHHHHHHHCCCEEECCCCCCHHHHHHHCCHHHCCCCCEEECCEEECCCHHHHHHHH AGAA CCCC >Mature Secondary Structure AALTIFPAIDLKAGQVVRLAEGDMDRATVYGDDPAAQARRFADAGATHLHVVDLDGAFA CEEEEEEEEECCCCCEEEECCCCCCCEEEECCCHHHHHHHHHCCCCCEEEEEECCCCCC GASVNGAAVESIIAAFPGQVQVGGGIRDRAGVDRWLALGVARVIIGTAALKDPEFVKSAA CCCCCHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH RDLPGRIVVGVDARDGMVATEGWADVSDVRVEDLARRFEDAGVAALLFTDVGRDGLLKGC HCCCCEEEEEECCCCCEEEECCCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCC NVAATVALAGVVDIPVIASGGVAGIEDIHALRPHVADGIEGVITGRALYDGRLDLAEAIA CHHHHHHHHHHHCCCEEECCCCCCHHHHHHHCCHHHCCCCCEEECCEEECCCHHHHHHHH AGAA CCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA