Click here to switch to the map view.

The map label for this gene is rpe [H]

Identifier: 103488603

GI number: 103488603

Start: 3281872

End: 3282543

Strand: Reverse

Name: rpe [H]

Synonym: Sala_3128

Alternate gene names: 103488603

Gene position: 3282543-3281872 (Counterclockwise)

Preceding gene: 103488604

Following gene: 103488602

Centisome position: 98.13

GC content: 65.92

Gene sequence:

>672_bases
ATGACCGCCACGCCGCCCGCCGTCCGCATTGCCCCGTCGATCCTCAGCGCCGATTTCGCGAAGCTGGGCGAGGAAGTGCG
CGCGATCGAGGCCGCGGGGGCCGACTGGGTTCATATCGACGTGATGGACGGCCATTTTGTGCCCAATCTGACGATCGGGC
CGATGGTGGTGAAGGCGCTGCGCCCGCACTCGTCGCTGCCCTTTGACGTCCATCTGATGATCTCGCCGGTCGACCATTTC
CTCGACGCCTTTGCCGCGGCGGGCGCCGACATCATCACCGTCCATCCCGAGGCGGGACCGCACATCCACCGCACCGTCCA
GCATATCAAATCGCTGGGCAAACAGGCGGGCGTGTCGCTGAATCCCGCGACCCCGGCCAAGATGCTCGATTATCTGATCG
ACGACATCGACCTGGTCCTCATCATGAGCGTCAACCCCGGCTTCGGCGGGCAGAGCTTCATCGCCAGCCAGCTTCGCAAG
ATCGAGGCGGTGAAGAAGATGATCGAGAAATCGGGCCGCGACATAAGGCTGGAGGTCGACGGCGGGATCGATGCGGCGAC
CGCGCCACGCGCCATATCGGCCGGCGCCGACGTGCTCGTCGCGGGGACCGCGACCTTCAAGGGCGGGCCAGGGGCATATG
CCGACAATATCCGGCGGCTGCGCGGGGCCTGA

Upstream 100 bases:

>100_bases
ACCAGCCATTCCCCTCTCAACACCGCAGCGCCCCCCGCTTTTCCACAACCACCGCCCGCCCCCGCTTGCTCCCGACTCCT
TAGATGGTTAAGGCCGATCC

Downstream 100 bases:

>100_bases
TCGATGGAGGGGAGACCGCTGACCACCGCCCCCGCCGACCCGCCGCTCGATCCCGGTTACGACGCCGCGCCGATCGACGA
CACGATCGAACCCGGCAAAC

Product: ribulose-phosphate 3-epimerase

Products: NA

Alternate protein names: Pentose-5-phosphate 3-epimerase; PPE; R5P3E [H]

Number of amino acids: Translated: 223; Mature: 222

Protein sequence:

>223_residues
MTATPPAVRIAPSILSADFAKLGEEVRAIEAAGADWVHIDVMDGHFVPNLTIGPMVVKALRPHSSLPFDVHLMISPVDHF
LDAFAAAGADIITVHPEAGPHIHRTVQHIKSLGKQAGVSLNPATPAKMLDYLIDDIDLVLIMSVNPGFGGQSFIASQLRK
IEAVKKMIEKSGRDIRLEVDGGIDAATAPRAISAGADVLVAGTATFKGGPGAYADNIRRLRGA

Sequences:

>Translated_223_residues
MTATPPAVRIAPSILSADFAKLGEEVRAIEAAGADWVHIDVMDGHFVPNLTIGPMVVKALRPHSSLPFDVHLMISPVDHF
LDAFAAAGADIITVHPEAGPHIHRTVQHIKSLGKQAGVSLNPATPAKMLDYLIDDIDLVLIMSVNPGFGGQSFIASQLRK
IEAVKKMIEKSGRDIRLEVDGGIDAATAPRAISAGADVLVAGTATFKGGPGAYADNIRRLRGA
>Mature_222_residues
TATPPAVRIAPSILSADFAKLGEEVRAIEAAGADWVHIDVMDGHFVPNLTIGPMVVKALRPHSSLPFDVHLMISPVDHFL
DAFAAAGADIITVHPEAGPHIHRTVQHIKSLGKQAGVSLNPATPAKMLDYLIDDIDLVLIMSVNPGFGGQSFIASQLRKI
EAVKKMIEKSGRDIRLEVDGGIDAATAPRAISAGADVLVAGTATFKGGPGAYADNIRRLRGA

Specific function: Unknown

COG id: COG0036

COG function: function code G; Pentose-5-phosphate-3-epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribulose-phosphate 3-epimerase family [H]

Homologues:

Organism=Homo sapiens, GI40385883, Length=202, Percent_Identity=36.6336633663366, Blast_Score=142, Evalue=2e-34,
Organism=Homo sapiens, GI219879828, Length=202, Percent_Identity=34.6534653465347, Blast_Score=133, Evalue=1e-31,
Organism=Homo sapiens, GI24307923, Length=156, Percent_Identity=27.5641025641026, Blast_Score=74, Evalue=8e-14,
Organism=Escherichia coli, GI1789788, Length=198, Percent_Identity=59.5959595959596, Blast_Score=235, Evalue=2e-63,
Organism=Escherichia coli, GI1790523, Length=211, Percent_Identity=38.3886255924171, Blast_Score=162, Evalue=1e-41,
Organism=Escherichia coli, GI1790754, Length=200, Percent_Identity=31, Blast_Score=93, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17552948, Length=203, Percent_Identity=38.423645320197, Blast_Score=143, Evalue=6e-35,
Organism=Saccharomyces cerevisiae, GI6322341, Length=210, Percent_Identity=41.9047619047619, Blast_Score=162, Evalue=4e-41,
Organism=Drosophila melanogaster, GI24586301, Length=218, Percent_Identity=35.7798165137615, Blast_Score=142, Evalue=2e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000056
- InterPro:   IPR011060 [H]

Pfam domain/function: PF00834 Ribul_P_3_epim [H]

EC number: =5.1.3.1 [H]

Molecular weight: Translated: 23488; Mature: 23357

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: PS01085 RIBUL_P_3_EPIMER_1 ; PS01086 RIBUL_P_3_EPIMER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTATPPAVRIAPSILSADFAKLGEEVRAIEAAGADWVHIDVMDGHFVPNLTIGPMVVKAL
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHH
RPHSSLPFDVHLMISPVDHFLDAFAAAGADIITVHPEAGPHIHRTVQHIKSLGKQAGVSL
CCCCCCCEEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCC
NPATPAKMLDYLIDDIDLVLIMSVNPGFGGQSFIASQLRKIEAVKKMIEKSGRDIRLEVD
CCCCHHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEC
GGIDAATAPRAISAGADVLVAGTATFKGGPGAYADNIRRLRGA
CCCCCCCCCCHHCCCCCEEEEECEECCCCCCHHHHHHHHHHCC
>Mature Secondary Structure 
TATPPAVRIAPSILSADFAKLGEEVRAIEAAGADWVHIDVMDGHFVPNLTIGPMVVKAL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHH
RPHSSLPFDVHLMISPVDHFLDAFAAAGADIITVHPEAGPHIHRTVQHIKSLGKQAGVSL
CCCCCCCEEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCC
NPATPAKMLDYLIDDIDLVLIMSVNPGFGGQSFIASQLRKIEAVKKMIEKSGRDIRLEVD
CCCCHHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEC
GGIDAATAPRAISAGADVLVAGTATFKGGPGAYADNIRRLRGA
CCCCCCCCCCHHCCCCCEEEEECEECCCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9534248; 9384377 [H]