| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103488597
Identifier: 103488597
GI number: 103488597
Start: 3272042
End: 3274363
Strand: Direct
Name: 103488597
Synonym: Sala_3122
Alternate gene names: NA
Gene position: 3272042-3274363 (Clockwise)
Preceding gene: 103488595
Following gene: 103488600
Centisome position: 97.81
GC content: 67.23
Gene sequence:
>2322_bases ATGCCTGGGTCGACATGTGGGTCACCCACGTTTCGGTTGCTGGGGGATTTTGCGGTTGAACCGGCGCTGCTCGCGCCGCA TGGCCGCAAGGCCAGAGCGCTTCTGGCGCGACTCGCTCTGGCCGACGGCCCGCTTTCGCGCGACCGGCTCAGCGCGCTCC TGTGGAGCCATCGGGCCGAGCCCCAGGCGCACGCCAGTCTGCGGCAATGCCTGATGGAACTGAAAGCCTGGACGCGTGCC TCGCCGCCGCTGCTCCATGCCGACCGCGACGCGATCGCGATCGATCATGCGCATGTCGCTGACGATGTCTCCCTGCTGCT TTCGGCCTGTGCATGCGACGATGCCGACGCGGTGCTGCGCTGGCTGCCCGCTGACGAGGTTGCGCTGCTCGCCGATCTCG ACGGGGTCGACGAAGCCTTTGACGACTGGCTGGCCGCCGAACGGGCGCGCAACACCGAGGTGGTCGTCCGCGAGGTGCTG GCCATGGCCGAACGACTGCTGGTCGCCGGCGATATCGACGGATCGCTGCGCGTTGCCGACCGGATGACCCGATTCGATCC GTGCAGCGAACATGCCGCTCGTCTGGTCATGCAGGCGCGCTGGCAGGCGGGGGACGATGATGGCGTGCGCCACGCATGGC ACCGGCTCGAGGATGCGGTCGCGCGGGGGCTCGACGGGCGACCATCGCCGGAAACCGCCAGACTGTATCATCGGTTGATG GACGAACCTTCATGCCGGTCGAACGAGGTGGCGCTCCAGACGGGCAAAAAACCGCCGCCCGACCGGCGGACGCATCGCAT TGCGACCGTTGCGGCAACCGTTGCGGCGTTCGGCCTGATGAGCGCTGATGCGCCGCGTGAGGGAGGCGGGGAGCCCGCGA TGATGACGCCGACAGTACGGATCGAACCGGTCGTTTCGCGCAACCATGGCATGATTGAACTTGGTTTCGCCGATGCGCTT GCAGGCGATTTTGTCCGGCTGGCCAACGCGTCAGGCGGCCTCGTCCGCATTCTCGATGGAGAGGCCGTCGGCAGAGGCGA CTTCATCGTTCGTGTCGCGATCAATCGCGATGACGGCAATTTGACAAGCGAATCGCGCGTCGTCGATGCGCGGAGCGGCG CGATTCTCTGGTCCAGTCGGCTTTCGGGGTCACCGCGCGACCTGACGCGCCTGCGCGAACAGACGGCGGTGTCGGTGGCT GCGGTGATTGATTGCGCGCTGCGTCTCAACGACGGACAGGCGGCGCTTGCCGCCGATGCCGACCGGCGCGCGCAAGTGTT CGCGATCTGCGACGCTCATGACGATCAAGACGGCGCACGCGCCGTCGCCCTGCTCGAACGGTTTGCAGCGCGTTGGCCCG GCGACAGGGTCGCCCTCGGCCAGCTAGCGCTGGCCCGCGCAAAGCTCATATTCGGCGAGGCCGAAACGGCCGAGCAGGAA CGCCAGCGCCAGCTCGCGATTCGCGCCGCGCGCCGCGCGCTGGCGAACGACCCCGCCAATGTCTATGCAATGGTGGCGCT TTCGCAGGCCGGGCGACGCGAACGCTACATGGTCGACGGCCTTCCCATGCTGAAGCGCGCGTTGTCCGTCGATCCGCGAT TTTCGACCGCATTGATGCTCCAGGCGACAGGACTGTTTCAGGCCGGCTATGTCGCGGCCAGCGTCCGGCCGTCGATTGAC GCCGCCAACGCCGATCCCACCTCGATCGTCAGGGCGCTTGCGGTCGTTCGGCGGCTGGCCGCGGCGGGGCGGATGAAAGA AGCCTGGGACCGGCTCGACGCGGTCGCCGCCGTCTGGCCGGACCATCCCGATCTCGTCGAGCATCGCTATCGACTGACGC TCGAACAGCCTGATAGGGTCCGCGCCGCGGCGCTTGTCGCGTCGAGCGGCGTCGATGACCGATGGCGGCTCGATCGTCTC ATCCTCCAACAGGTCGCAACCGGACGGCAGGACAGCGCCGCACTCGATGCCGCGGCCGAGATTGAATATTCGCGATTGCC GGCCGCCGCTTATCAACTCGCCGCGCTCTACACGCGGATCGGCGACATCCGGCGGGCGCTGATCTGGCTCGACCGGGCGC CGGTTCGCCAAACCAGCGGTCAATGGTCGTTACTCTATTGGCCATCGGTGGCGCCGCTCCGCCGCGAACCGCGCTTTTTC GCCAAGATGGCGCAGCTTGGGCTTGTCGATTATTGGCGGCGCGAGAATCGCTGGCCTGATTTCTGCCGCGAACCAGGGCT CCGCTACGATTGCCGACGCGAAGCTGACAGACTGGTTGCCGCCGGGCGCGCGGTCAATGCCGGAAATGCCGCATTCCGGT GA
Upstream 100 bases:
>100_bases TGCGTCAATTCGGTGTTATTCAGTCGCGGGGATAAGAGATCAGGGCGCGCAGATCCCCATGTCAGGAGACTGCGCCGTGC ATGCGACATTCGTGACGAGT
Downstream 100 bases:
>100_bases AGACCATCGCCAGCCCGGCTTTGTTCGCGGCTGCGATCACCTCATCGTCGCGGATCGATCCGCCGGGCTGGATCACGCAG GTCGCGCCCGCCTCGACCGC
Product: SARP family transcriptional regulator
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 773; Mature: 772
Protein sequence:
>773_residues MPGSTCGSPTFRLLGDFAVEPALLAPHGRKARALLARLALADGPLSRDRLSALLWSHRAEPQAHASLRQCLMELKAWTRA SPPLLHADRDAIAIDHAHVADDVSLLLSACACDDADAVLRWLPADEVALLADLDGVDEAFDDWLAAERARNTEVVVREVL AMAERLLVAGDIDGSLRVADRMTRFDPCSEHAARLVMQARWQAGDDDGVRHAWHRLEDAVARGLDGRPSPETARLYHRLM DEPSCRSNEVALQTGKKPPPDRRTHRIATVAATVAAFGLMSADAPREGGGEPAMMTPTVRIEPVVSRNHGMIELGFADAL AGDFVRLANASGGLVRILDGEAVGRGDFIVRVAINRDDGNLTSESRVVDARSGAILWSSRLSGSPRDLTRLREQTAVSVA AVIDCALRLNDGQAALAADADRRAQVFAICDAHDDQDGARAVALLERFAARWPGDRVALGQLALARAKLIFGEAETAEQE RQRQLAIRAARRALANDPANVYAMVALSQAGRRERYMVDGLPMLKRALSVDPRFSTALMLQATGLFQAGYVAASVRPSID AANADPTSIVRALAVVRRLAAAGRMKEAWDRLDAVAAVWPDHPDLVEHRYRLTLEQPDRVRAAALVASSGVDDRWRLDRL ILQQVATGRQDSAALDAAAEIEYSRLPAAAYQLAALYTRIGDIRRALIWLDRAPVRQTSGQWSLLYWPSVAPLRREPRFF AKMAQLGLVDYWRRENRWPDFCREPGLRYDCRREADRLVAAGRAVNAGNAAFR
Sequences:
>Translated_773_residues MPGSTCGSPTFRLLGDFAVEPALLAPHGRKARALLARLALADGPLSRDRLSALLWSHRAEPQAHASLRQCLMELKAWTRA SPPLLHADRDAIAIDHAHVADDVSLLLSACACDDADAVLRWLPADEVALLADLDGVDEAFDDWLAAERARNTEVVVREVL AMAERLLVAGDIDGSLRVADRMTRFDPCSEHAARLVMQARWQAGDDDGVRHAWHRLEDAVARGLDGRPSPETARLYHRLM DEPSCRSNEVALQTGKKPPPDRRTHRIATVAATVAAFGLMSADAPREGGGEPAMMTPTVRIEPVVSRNHGMIELGFADAL AGDFVRLANASGGLVRILDGEAVGRGDFIVRVAINRDDGNLTSESRVVDARSGAILWSSRLSGSPRDLTRLREQTAVSVA AVIDCALRLNDGQAALAADADRRAQVFAICDAHDDQDGARAVALLERFAARWPGDRVALGQLALARAKLIFGEAETAEQE RQRQLAIRAARRALANDPANVYAMVALSQAGRRERYMVDGLPMLKRALSVDPRFSTALMLQATGLFQAGYVAASVRPSID AANADPTSIVRALAVVRRLAAAGRMKEAWDRLDAVAAVWPDHPDLVEHRYRLTLEQPDRVRAAALVASSGVDDRWRLDRL ILQQVATGRQDSAALDAAAEIEYSRLPAAAYQLAALYTRIGDIRRALIWLDRAPVRQTSGQWSLLYWPSVAPLRREPRFF AKMAQLGLVDYWRRENRWPDFCREPGLRYDCRREADRLVAAGRAVNAGNAAFR >Mature_772_residues PGSTCGSPTFRLLGDFAVEPALLAPHGRKARALLARLALADGPLSRDRLSALLWSHRAEPQAHASLRQCLMELKAWTRAS PPLLHADRDAIAIDHAHVADDVSLLLSACACDDADAVLRWLPADEVALLADLDGVDEAFDDWLAAERARNTEVVVREVLA MAERLLVAGDIDGSLRVADRMTRFDPCSEHAARLVMQARWQAGDDDGVRHAWHRLEDAVARGLDGRPSPETARLYHRLMD EPSCRSNEVALQTGKKPPPDRRTHRIATVAATVAAFGLMSADAPREGGGEPAMMTPTVRIEPVVSRNHGMIELGFADALA GDFVRLANASGGLVRILDGEAVGRGDFIVRVAINRDDGNLTSESRVVDARSGAILWSSRLSGSPRDLTRLREQTAVSVAA VIDCALRLNDGQAALAADADRRAQVFAICDAHDDQDGARAVALLERFAARWPGDRVALGQLALARAKLIFGEAETAEQER QRQLAIRAARRALANDPANVYAMVALSQAGRRERYMVDGLPMLKRALSVDPRFSTALMLQATGLFQAGYVAASVRPSIDA ANADPTSIVRALAVVRRLAAAGRMKEAWDRLDAVAAVWPDHPDLVEHRYRLTLEQPDRVRAAALVASSGVDDRWRLDRLI LQQVATGRQDSAALDAAAEIEYSRLPAAAYQLAALYTRIGDIRRALIWLDRAPVRQTSGQWSLLYWPSVAPLRREPRFFA KMAQLGLVDYWRRENRWPDFCREPGLRYDCRREADRLVAAGRAVNAGNAAFR
Specific function: Unknown
COG id: COG3629
COG function: function code T; DNA-binding transcriptional activator of the SARP family
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 84640; Mature: 84509
Theoretical pI: Translated: 7.58; Mature: 7.58
Prosite motif: PS50293 TPR_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPGSTCGSPTFRLLGDFAVEPALLAPHGRKARALLARLALADGPLSRDRLSALLWSHRAE CCCCCCCCCHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCC PQAHASLRQCLMELKAWTRASPPLLHADRDAIAIDHAHVADDVSLLLSACACDDADAVLR CHHHHHHHHHHHHHHHHHCCCCCCEECCCCEEEECCHHHHHHHHHHHHHHCCCCHHHHHH WLPADEVALLADLDGVDEAFDDWLAAERARNTEVVVREVLAMAERLLVAGDIDGSLRVAD HCCCCCEEEEECCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHEEECCCCCHHHHH RMTRFDPCSEHAARLVMQARWQAGDDDGVRHAWHRLEDAVARGLDGRPSPETARLYHRLM HHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH DEPSCRSNEVALQTGKKPPPDRRTHRIATVAATVAAFGLMSADAPREGGGEPAMMTPTVR CCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCEE IEPVVSRNHGMIELGFADALAGDFVRLANASGGLVRILDGEAVGRGDFIVRVAINRDDGN EEEEECCCCCEEEECHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCEEEEEEEECCCCC LTSESRVVDARSGAILWSSRLSGSPRDLTRLREQTAVSVAAVIDCALRLNDGQAALAADA CCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEECCC DRRAQVFAICDAHDDQDGARAVALLERFAARWPGDRVALGQLALARAKLIFGEAETAEQE CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHH RQRQLAIRAARRALANDPANVYAMVALSQAGRRERYMVDGLPMLKRALSVDPRFSTALML HHHHHHHHHHHHHHHCCCCHHEEEEEHHHCCCCCCEEECCHHHHHHHHCCCCCCCCEEEE QATGLFQAGYVAASVRPSIDAANADPTSIVRALAVVRRLAAAGRMKEAWDRLDAVAAVWP EECCCHHHCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCC DHPDLVEHRYRLTLEQPDRVRAAALVASSGVDDRWRLDRLILQQVATGRQDSAALDAAAE CCHHHHHHHHEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHH IEYSRLPAAAYQLAALYTRIGDIRRALIWLDRAPVRQTSGQWSLLYWPSVAPLRREPRFF HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCHHHH AKMAQLGLVDYWRRENRWPDFCREPGLRYDCRREADRLVAAGRAVNAGNAAFR HHHHHHHHHHHHHHCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC >Mature Secondary Structure PGSTCGSPTFRLLGDFAVEPALLAPHGRKARALLARLALADGPLSRDRLSALLWSHRAE CCCCCCCCHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCC PQAHASLRQCLMELKAWTRASPPLLHADRDAIAIDHAHVADDVSLLLSACACDDADAVLR CHHHHHHHHHHHHHHHHHCCCCCCEECCCCEEEECCHHHHHHHHHHHHHHCCCCHHHHHH WLPADEVALLADLDGVDEAFDDWLAAERARNTEVVVREVLAMAERLLVAGDIDGSLRVAD HCCCCCEEEEECCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHEEECCCCCHHHHH RMTRFDPCSEHAARLVMQARWQAGDDDGVRHAWHRLEDAVARGLDGRPSPETARLYHRLM HHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH DEPSCRSNEVALQTGKKPPPDRRTHRIATVAATVAAFGLMSADAPREGGGEPAMMTPTVR CCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCEE IEPVVSRNHGMIELGFADALAGDFVRLANASGGLVRILDGEAVGRGDFIVRVAINRDDGN EEEEECCCCCEEEECHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCEEEEEEEECCCCC LTSESRVVDARSGAILWSSRLSGSPRDLTRLREQTAVSVAAVIDCALRLNDGQAALAADA CCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEECCC DRRAQVFAICDAHDDQDGARAVALLERFAARWPGDRVALGQLALARAKLIFGEAETAEQE CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHH RQRQLAIRAARRALANDPANVYAMVALSQAGRRERYMVDGLPMLKRALSVDPRFSTALML HHHHHHHHHHHHHHHCCCCHHEEEEEHHHCCCCCCEEECCHHHHHHHHCCCCCCCCEEEE QATGLFQAGYVAASVRPSIDAANADPTSIVRALAVVRRLAAAGRMKEAWDRLDAVAAVWP EECCCHHHCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCC DHPDLVEHRYRLTLEQPDRVRAAALVASSGVDDRWRLDRLILQQVATGRQDSAALDAAAE CCHHHHHHHHEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHH IEYSRLPAAAYQLAALYTRIGDIRRALIWLDRAPVRQTSGQWSLLYWPSVAPLRREPRFF HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCHHHH AKMAQLGLVDYWRRENRWPDFCREPGLRYDCRREADRLVAAGRAVNAGNAAFR HHHHHHHHHHHHHHCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA