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The map label for this gene is ycdC [C]

Identifier: 103488589

GI number: 103488589

Start: 3262670

End: 3263314

Strand: Reverse

Name: ycdC [C]

Synonym: Sala_3113

Alternate gene names: 103488589

Gene position: 3263314-3262670 (Counterclockwise)

Preceding gene: 103488596

Following gene: 103488585

Centisome position: 97.55

GC content: 64.34

Gene sequence:

>645_bases
TTGTCAATCGAAATGATACCAGACAGTACGCCTGCTATCGACGACGCCGCCGGGGCGCGCCGCAAGGCTTTCGTCGACGC
CGCGCGCGAGCTGTTTTTTGCGAACGGCTATGCGGGAACGACGATGTCTTCGATAGCCAGCAAGGTCGGCGGCTCGAAAA
CCACGCTCTGGACCTATTTTCCGTCGAAGGAAGATTTGTTCGCCGCGGTGGTTGACGATATCGTCGAGCGCCATGGTCAT
GCGCTGACCGTCGACCTGCCGATCGACGCGCCCGTCCCCGACGTGCTCCGCAACTTCGGCATGACATTGATGACCAAGCT
GACCGCCTCGCCGCTGCTTTCGCTCTACCGGCTGGTCGTGGGCGAGGCCGAGCGCTTTCCGCATCTCGCCGAGACCTTCT
ACGACCGCGGGCCGCGCCGCGGCAAGGCGCGCGCCGCCGCCTGGGTCGCCGAAAAAATGGTGCGCGGCGAGATCCGCCAG
GGCGACCCGATGCGCGCGGTGCAGCAGTTCGCCGGTCTCTGCCAGTCGGGGCTGTATCAGTTCGCGGTGCTGAGCCTCCC
CGAAAGCCGCGATCTCAGCCACCTTTCGGAAGAAGTCGATGCCGCGGTCGACACCTTCTGCCGCGCCTGGCAAATCGAGA
AATGA

Upstream 100 bases:

>100_bases
GCCAACAGGCCAAGAACCGCAGTTGTAACAAAAATGAATCGAGGCATGGCTTCCAACGATACTAGCTGGTATCATGCGCA
GATGAACTGCGGAGGAAGCA

Downstream 100 bases:

>100_bases
GCGCCTGCACCGAAGAGTTACCGGAAGGTCGAGCGCGGAACCTGTATCCCGAAGCGATTCGCTTTGGGGTGGATTTGTGA
TTCACCCTGATAGAAAGTGG

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; Transcriptional Regulator TetR Family Protein; Regulatory Protein TetR; TetR-Family Transcriptional Regulator; Transcription Regulator Protein; Transcriptional Regulator Tetr Family; TetR Family Transcriptional Regulatory Protein; Transcriptional Regulator Protein Tetr Family; TetR-Like Virulence Regulator; Transcriptional Regulatory Protein; Regulatory Protein Tetr; Calsymin Transcriptional Regulator Protein TetR Family; TetR-Type Transcriptional Regulator; Transcription Regulator TetR; Transcriptional Regulator Protein; Transcription Regulator Protein Tetr Family; TetR Family Regulatory Protein; Transcription Regulator Protein TetR Family; Transcriptional Regulator TetR; TetR/AcrR Family Transcriptional Regulator; TetR Family Regulatory

Number of amino acids: Translated: 214; Mature: 213

Protein sequence:

>214_residues
MSIEMIPDSTPAIDDAAGARRKAFVDAARELFFANGYAGTTMSSIASKVGGSKTTLWTYFPSKEDLFAAVVDDIVERHGH
ALTVDLPIDAPVPDVLRNFGMTLMTKLTASPLLSLYRLVVGEAERFPHLAETFYDRGPRRGKARAAAWVAEKMVRGEIRQ
GDPMRAVQQFAGLCQSGLYQFAVLSLPESRDLSHLSEEVDAAVDTFCRAWQIEK

Sequences:

>Translated_214_residues
MSIEMIPDSTPAIDDAAGARRKAFVDAARELFFANGYAGTTMSSIASKVGGSKTTLWTYFPSKEDLFAAVVDDIVERHGH
ALTVDLPIDAPVPDVLRNFGMTLMTKLTASPLLSLYRLVVGEAERFPHLAETFYDRGPRRGKARAAAWVAEKMVRGEIRQ
GDPMRAVQQFAGLCQSGLYQFAVLSLPESRDLSHLSEEVDAAVDTFCRAWQIEK
>Mature_213_residues
SIEMIPDSTPAIDDAAGARRKAFVDAARELFFANGYAGTTMSSIASKVGGSKTTLWTYFPSKEDLFAAVVDDIVERHGHA
LTVDLPIDAPVPDVLRNFGMTLMTKLTASPLLSLYRLVVGEAERFPHLAETFYDRGPRRGKARAAAWVAEKMVRGEIRQG
DPMRAVQQFAGLCQSGLYQFAVLSLPESRDLSHLSEEVDAAVDTFCRAWQIEK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23542; Mature: 23411

Theoretical pI: Translated: 5.70; Mature: 5.70

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIEMIPDSTPAIDDAAGARRKAFVDAARELFFANGYAGTTMSSIASKVGGSKTTLWTYF
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCEEEEEC
PSKEDLFAAVVDDIVERHGHALTVDLPIDAPVPDVLRNFGMTLMTKLTASPLLSLYRLVV
CCHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GEAERFPHLAETFYDRGPRRGKARAAAWVAEKMVRGEIRQGDPMRAVQQFAGLCQSGLYQ
HHHHHCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
FAVLSLPESRDLSHLSEEVDAAVDTFCRAWQIEK
HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SIEMIPDSTPAIDDAAGARRKAFVDAARELFFANGYAGTTMSSIASKVGGSKTTLWTYF
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCEEEEEC
PSKEDLFAAVVDDIVERHGHALTVDLPIDAPVPDVLRNFGMTLMTKLTASPLLSLYRLVV
CCHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GEAERFPHLAETFYDRGPRRGKARAAAWVAEKMVRGEIRQGDPMRAVQQFAGLCQSGLYQ
HHHHHCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
FAVLSLPESRDLSHLSEEVDAAVDTFCRAWQIEK
HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA