| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103488585
Identifier: 103488585
GI number: 103488585
Start: 3259420
End: 3260445
Strand: Reverse
Name: 103488585
Synonym: Sala_3109
Alternate gene names: NA
Gene position: 3260445-3259420 (Counterclockwise)
Preceding gene: 103488589
Following gene: 103488580
Centisome position: 97.47
GC content: 67.93
Gene sequence:
>1026_bases ATGCCCGCCGCGCCATCTGTGTCCGCCGTAATCGACGACGCCGCCTGGCTGGCGCATCGCTATGATCCCGACCACGACGC CTTTCACTTCCGCCGGGTATCGCGGTCCGCGCGCATGGCGGTTCCCTTCCTCACCGATCAGCATCTGGGCGAGGAAGCGT CGCCGCTGGTGCTGCGCCGCGCCGACTGCACGGCGACGAACGGGCCGCGGCGGGCGCCGATCCATTTCCTCTTCCATTCG GCCTATTGCGCGTCGACGATGCTCGCGCACGTGCTCGATCAGCCGGGGGTGGCGACGACGCTTTCAGAACCGGTGCTGCT CAATGACATGATCGGATGGCGTCGCCGCGGTGCCGACCCGCGGATGCACGGCCGGGTGATGGACGACGCGCTCGCCATGC TCGGTCGCGGCTTTGCCGCTGGCGAAGCGGTGGTCGTCAAGCCTTCGAACATCTTCAACCCGCTCGCGCGAGGCGTGCTG TTGCTGCGGCCACAGGCGCGCGCGATCCTGCTCCACGCGCCGCTTCGCGCCTTCCTGCTTTCGGTTGCCCGCAAGGGGCT GTGGTGCCGCCTTTGGTGCCGCGAGCTTTTTGAAAATTATCTCGCCGACGGCTTCGTTCGACTGGCCTTCGGGCCACACG ACTATTTTCGCCAATCCGACCTGCAGGTCGCGGCGATCGGCTGGCTGGCGCAGCAACAGGCCTTTGCGGCCTTGCTCGAC TGGGCGCCCGACCGGATTGCTTCGCTCGACAGCGAAACGCTGACGCGCGATCCGGTTGCGGCGATTGCGGCGGCGATGGA CCATTTGGGTCTTGCGGTCGACCGCGGTGCGATCGCCGACCATCCGTCGCTCGTGCGCAACAGCAAGTCGGGCGCCGCCT TCGCTCCGGGGGAGCGACAGCGCGACCTTGCCGCGGCTGAAAGGGCTTATGGCGAGGAAATTGCGCAGGTGGTCGGCTGG GCCGAGGCCGTCGCCGATCAGGCGGCCATTCCGATGACGCTTCCCGGCGCGCTGGCGGCACGCTGA
Upstream 100 bases:
>100_bases AGCAATGCCGCGACGGTTCGCTTCGACGGCAGAGGCGGGAGGAGTTGCGCTGGCCATGCCCGTGCTTGCCATCGGCCGCG CCAATCGGCAAGGTTGATCG
Downstream 100 bases:
>100_bases CGCAACGGAAGGCCGGTTGCGGTCAAAGGTGGACATTCACTCCACCGCCGGTCCGGTCTCACCATTCCCATGGAAAAAGG GGCGGACATCGCTGTCCGCC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 341; Mature: 340
Protein sequence:
>341_residues MPAAPSVSAVIDDAAWLAHRYDPDHDAFHFRRVSRSARMAVPFLTDQHLGEEASPLVLRRADCTATNGPRRAPIHFLFHS AYCASTMLAHVLDQPGVATTLSEPVLLNDMIGWRRRGADPRMHGRVMDDALAMLGRGFAAGEAVVVKPSNIFNPLARGVL LLRPQARAILLHAPLRAFLLSVARKGLWCRLWCRELFENYLADGFVRLAFGPHDYFRQSDLQVAAIGWLAQQQAFAALLD WAPDRIASLDSETLTRDPVAAIAAAMDHLGLAVDRGAIADHPSLVRNSKSGAAFAPGERQRDLAAAERAYGEEIAQVVGW AEAVADQAAIPMTLPGALAAR
Sequences:
>Translated_341_residues MPAAPSVSAVIDDAAWLAHRYDPDHDAFHFRRVSRSARMAVPFLTDQHLGEEASPLVLRRADCTATNGPRRAPIHFLFHS AYCASTMLAHVLDQPGVATTLSEPVLLNDMIGWRRRGADPRMHGRVMDDALAMLGRGFAAGEAVVVKPSNIFNPLARGVL LLRPQARAILLHAPLRAFLLSVARKGLWCRLWCRELFENYLADGFVRLAFGPHDYFRQSDLQVAAIGWLAQQQAFAALLD WAPDRIASLDSETLTRDPVAAIAAAMDHLGLAVDRGAIADHPSLVRNSKSGAAFAPGERQRDLAAAERAYGEEIAQVVGW AEAVADQAAIPMTLPGALAAR >Mature_340_residues PAAPSVSAVIDDAAWLAHRYDPDHDAFHFRRVSRSARMAVPFLTDQHLGEEASPLVLRRADCTATNGPRRAPIHFLFHSA YCASTMLAHVLDQPGVATTLSEPVLLNDMIGWRRRGADPRMHGRVMDDALAMLGRGFAAGEAVVVKPSNIFNPLARGVLL LRPQARAILLHAPLRAFLLSVARKGLWCRLWCRELFENYLADGFVRLAFGPHDYFRQSDLQVAAIGWLAQQQAFAALLDW APDRIASLDSETLTRDPVAAIAAAMDHLGLAVDRGAIADHPSLVRNSKSGAAFAPGERQRDLAAAERAYGEEIAQVVGWA EAVADQAAIPMTLPGALAAR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37083; Mature: 36952
Theoretical pI: Translated: 7.40; Mature: 7.40
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPAAPSVSAVIDDAAWLAHRYDPDHDAFHFRRVSRSARMAVPFLTDQHLGEEASPLVLRR CCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHEECCCCCHHHCCCCCCCEEEEE ADCTATNGPRRAPIHFLFHSAYCASTMLAHVLDQPGVATTLSEPVLLNDMIGWRRRGADP CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCHHHHHHHHHHHCCCCC RMHGRVMDDALAMLGRGFAAGEAVVVKPSNIFNPLARGVLLLRPQARAILLHAPLRAFLL HHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHCCEEEECCCCCEEEEHHHHHHHHH SVARKGLWCRLWCRELFENYLADGFVRLAFGPHDYFRQSDLQVAAIGWLAQQQAFAALLD HHHHCCHHHHHHHHHHHHHHHHCCEEEEEECCHHHHHCCCCEEEHHHHHHHHHHHHHHHH WAPDRIASLDSETLTRDPVAAIAAAMDHLGLAVDRGAIADHPSLVRNSKSGAAFAPGERQ CCCHHHHHCCCHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCCCCCHH RDLAAAERAYGEEIAQVVGWAEAVADQAAIPMTLPGALAAR HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHCC >Mature Secondary Structure PAAPSVSAVIDDAAWLAHRYDPDHDAFHFRRVSRSARMAVPFLTDQHLGEEASPLVLRR CCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHEECCCCCHHHCCCCCCCEEEEE ADCTATNGPRRAPIHFLFHSAYCASTMLAHVLDQPGVATTLSEPVLLNDMIGWRRRGADP CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCHHHHHHHHHHHCCCCC RMHGRVMDDALAMLGRGFAAGEAVVVKPSNIFNPLARGVLLLRPQARAILLHAPLRAFLL HHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHCCEEEECCCCCEEEEHHHHHHHHH SVARKGLWCRLWCRELFENYLADGFVRLAFGPHDYFRQSDLQVAAIGWLAQQQAFAALLD HHHHCCHHHHHHHHHHHHHHHHCCEEEEEECCHHHHHCCCCEEEHHHHHHHHHHHHHHHH WAPDRIASLDSETLTRDPVAAIAAAMDHLGLAVDRGAIADHPSLVRNSKSGAAFAPGERQ CCCHHHHHCCCHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCCCCCHH RDLAAAERAYGEEIAQVVGWAEAVADQAAIPMTLPGALAAR HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA