Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103488556

Identifier: 103488556

GI number: 103488556

Start: 3231680

End: 3232198

Strand: Direct

Name: 103488556

Synonym: Sala_3080

Alternate gene names: NA

Gene position: 3231680-3232198 (Clockwise)

Preceding gene: 103488555

Following gene: 103488560

Centisome position: 96.61

GC content: 63.39

Gene sequence:

>519_bases
ATGCGTTTTGCGTATCTGATCCTCCCGATGATGCTCCTCGCCGCCTGCGGGTCGGAGGAGAAGCGGACCGCCGATCGGCC
GGAGGTCACGATCAATGCCGGCGACGACCAGGGCGGGGTCGTGGTCAAGGCGGGCAAGGACGGCGGCAATATCAAGATCG
GCGGCAAGGGCGCCTCGATCGACATCGACATCCCCGATTTCGTCGACCTCGATGTCGAGGGCGATTTCGACATCGACGGC
GTCAAGCTTTACCCTGGCAGCAAGGTGACCACGGTCGACGTCAATGCGACCGAAAAGGACGGGCTGGACAATACGACGGT
CAAGCTCGGCTTCACCGCGCCCGCGGCGCCCAAGGTCGCCGCCGACTGGATGGCGGCCGAATTCGCGAAAAAGAGCGTTC
AGGTCACGCGCACCGGCGACACGCTCGCGGGCAAGGACAAGGACGGCGATGCCTTTACGATCAAATTCGGGCCGGACGGC
AAAAATGCCAAGGGCGAGGTGCTGATCGTCAAGCGGTGA

Upstream 100 bases:

>100_bases
CGCCTGATCCAAGCCCCTCCCTTTCAGCGGAGGGCGTGGACCAATTGACTCGTTCATCGCCAAGGTGTATTATTCAACTA
ATGCACCAAGGAGACGTGTC

Downstream 100 bases:

>100_bases
TCGCCGCTTTCCTCATAATCGTCACCCCGGCGAAGGCCGGGGTCTCACCCTATCGTGTTGAGGCACCGGCGAGATCCCGG
CCTTCGCCGGGATGACGGAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 172; Mature: 172

Protein sequence:

>172_residues
MRFAYLILPMMLLAACGSEEKRTADRPEVTINAGDDQGGVVVKAGKDGGNIKIGGKGASIDIDIPDFVDLDVEGDFDIDG
VKLYPGSKVTTVDVNATEKDGLDNTTVKLGFTAPAAPKVAADWMAAEFAKKSVQVTRTGDTLAGKDKDGDAFTIKFGPDG
KNAKGEVLIVKR

Sequences:

>Translated_172_residues
MRFAYLILPMMLLAACGSEEKRTADRPEVTINAGDDQGGVVVKAGKDGGNIKIGGKGASIDIDIPDFVDLDVEGDFDIDG
VKLYPGSKVTTVDVNATEKDGLDNTTVKLGFTAPAAPKVAADWMAAEFAKKSVQVTRTGDTLAGKDKDGDAFTIKFGPDG
KNAKGEVLIVKR
>Mature_172_residues
MRFAYLILPMMLLAACGSEEKRTADRPEVTINAGDDQGGVVVKAGKDGGNIKIGGKGASIDIDIPDFVDLDVEGDFDIDG
VKLYPGSKVTTVDVNATEKDGLDNTTVKLGFTAPAAPKVAADWMAAEFAKKSVQVTRTGDTLAGKDKDGDAFTIKFGPDG
KNAKGEVLIVKR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18064; Mature: 18064

Theoretical pI: Translated: 4.63; Mature: 4.63

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFAYLILPMMLLAACGSEEKRTADRPEVTINAGDDQGGVVVKAGKDGGNIKIGGKGASI
CCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCEEEECCCCCEE
DIDIPDFVDLDVEGDFDIDGVKLYPGSKVTTVDVNATEKDGLDNTTVKLGFTAPAAPKVA
EECCCCEEEEEECCCCCCCCEEECCCCEEEEEECCCCCCCCCCCCEEEEEECCCCCCCHH
ADWMAAEFAKKSVQVTRTGDTLAGKDKDGDAFTIKFGPDGKNAKGEVLIVKR
HHHHHHHHHHCEEEEEECCCEECCCCCCCCEEEEEECCCCCCCCCCEEEEEC
>Mature Secondary Structure
MRFAYLILPMMLLAACGSEEKRTADRPEVTINAGDDQGGVVVKAGKDGGNIKIGGKGASI
CCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCEEEECCCCCEE
DIDIPDFVDLDVEGDFDIDGVKLYPGSKVTTVDVNATEKDGLDNTTVKLGFTAPAAPKVA
EECCCCEEEEEECCCCCCCCEEECCCCEEEEEECCCCCCCCCCCCEEEEEECCCCCCCHH
ADWMAAEFAKKSVQVTRTGDTLAGKDKDGDAFTIKFGPDGKNAKGEVLIVKR
HHHHHHHHHHCEEEEEECCCEECCCCCCCCEEEEEECCCCCCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA