| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103488556
Identifier: 103488556
GI number: 103488556
Start: 3231680
End: 3232198
Strand: Direct
Name: 103488556
Synonym: Sala_3080
Alternate gene names: NA
Gene position: 3231680-3232198 (Clockwise)
Preceding gene: 103488555
Following gene: 103488560
Centisome position: 96.61
GC content: 63.39
Gene sequence:
>519_bases ATGCGTTTTGCGTATCTGATCCTCCCGATGATGCTCCTCGCCGCCTGCGGGTCGGAGGAGAAGCGGACCGCCGATCGGCC GGAGGTCACGATCAATGCCGGCGACGACCAGGGCGGGGTCGTGGTCAAGGCGGGCAAGGACGGCGGCAATATCAAGATCG GCGGCAAGGGCGCCTCGATCGACATCGACATCCCCGATTTCGTCGACCTCGATGTCGAGGGCGATTTCGACATCGACGGC GTCAAGCTTTACCCTGGCAGCAAGGTGACCACGGTCGACGTCAATGCGACCGAAAAGGACGGGCTGGACAATACGACGGT CAAGCTCGGCTTCACCGCGCCCGCGGCGCCCAAGGTCGCCGCCGACTGGATGGCGGCCGAATTCGCGAAAAAGAGCGTTC AGGTCACGCGCACCGGCGACACGCTCGCGGGCAAGGACAAGGACGGCGATGCCTTTACGATCAAATTCGGGCCGGACGGC AAAAATGCCAAGGGCGAGGTGCTGATCGTCAAGCGGTGA
Upstream 100 bases:
>100_bases CGCCTGATCCAAGCCCCTCCCTTTCAGCGGAGGGCGTGGACCAATTGACTCGTTCATCGCCAAGGTGTATTATTCAACTA ATGCACCAAGGAGACGTGTC
Downstream 100 bases:
>100_bases TCGCCGCTTTCCTCATAATCGTCACCCCGGCGAAGGCCGGGGTCTCACCCTATCGTGTTGAGGCACCGGCGAGATCCCGG CCTTCGCCGGGATGACGGAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 172; Mature: 172
Protein sequence:
>172_residues MRFAYLILPMMLLAACGSEEKRTADRPEVTINAGDDQGGVVVKAGKDGGNIKIGGKGASIDIDIPDFVDLDVEGDFDIDG VKLYPGSKVTTVDVNATEKDGLDNTTVKLGFTAPAAPKVAADWMAAEFAKKSVQVTRTGDTLAGKDKDGDAFTIKFGPDG KNAKGEVLIVKR
Sequences:
>Translated_172_residues MRFAYLILPMMLLAACGSEEKRTADRPEVTINAGDDQGGVVVKAGKDGGNIKIGGKGASIDIDIPDFVDLDVEGDFDIDG VKLYPGSKVTTVDVNATEKDGLDNTTVKLGFTAPAAPKVAADWMAAEFAKKSVQVTRTGDTLAGKDKDGDAFTIKFGPDG KNAKGEVLIVKR >Mature_172_residues MRFAYLILPMMLLAACGSEEKRTADRPEVTINAGDDQGGVVVKAGKDGGNIKIGGKGASIDIDIPDFVDLDVEGDFDIDG VKLYPGSKVTTVDVNATEKDGLDNTTVKLGFTAPAAPKVAADWMAAEFAKKSVQVTRTGDTLAGKDKDGDAFTIKFGPDG KNAKGEVLIVKR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18064; Mature: 18064
Theoretical pI: Translated: 4.63; Mature: 4.63
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRFAYLILPMMLLAACGSEEKRTADRPEVTINAGDDQGGVVVKAGKDGGNIKIGGKGASI CCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCEEEECCCCCEE DIDIPDFVDLDVEGDFDIDGVKLYPGSKVTTVDVNATEKDGLDNTTVKLGFTAPAAPKVA EECCCCEEEEEECCCCCCCCEEECCCCEEEEEECCCCCCCCCCCCEEEEEECCCCCCCHH ADWMAAEFAKKSVQVTRTGDTLAGKDKDGDAFTIKFGPDGKNAKGEVLIVKR HHHHHHHHHHCEEEEEECCCEECCCCCCCCEEEEEECCCCCCCCCCEEEEEC >Mature Secondary Structure MRFAYLILPMMLLAACGSEEKRTADRPEVTINAGDDQGGVVVKAGKDGGNIKIGGKGASI CCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCEEEECCCCCEE DIDIPDFVDLDVEGDFDIDGVKLYPGSKVTTVDVNATEKDGLDNTTVKLGFTAPAAPKVA EECCCCEEEEEECCCCCCCCEEECCCCEEEEEECCCCCCCCCCCCEEEEEECCCCCCCHH ADWMAAEFAKKSVQVTRTGDTLAGKDKDGDAFTIKFGPDGKNAKGEVLIVKR HHHHHHHHHHCEEEEEECCCEECCCCCCCCEEEEEECCCCCCCCCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA