| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is uxaA [H]
Identifier: 103488519
GI number: 103488519
Start: 3192930
End: 3194432
Strand: Reverse
Name: uxaA [H]
Synonym: Sala_3043
Alternate gene names: 103488519
Gene position: 3194432-3192930 (Counterclockwise)
Preceding gene: 103488524
Following gene: 103488516
Centisome position: 95.49
GC content: 67.66
Gene sequence:
>1503_bases GTGTCAAAGGCAAGCGAATATCCGATGAATCGCGCGATCCGTATCGGCGACGGCGACAATGTGGCGACCGCGATCGCGGA TATTGCGCCGGGCCAGCTGCTGTTCGCCGATGAGGATATTCGCGCTGCGGCTGCGGTGCCGCGCGGACACAAAATCGCCC TCGCGGCGATCGCGCGCGGCTCGCCGGTGGTCAAATATGGCTTCCCCATCGGGCGCGCCGCCGCGAACATCGCACCGGGC GAGCCTGTTCACCGCCATAATCTGGCGACTGCGCTCGGCGACAAGGGCGATTATCATTATAGTCCGCAGCCGGTTCAGGC CGCCGCCGCGGCACCATCGACGGCTTTTCGCGGCTATGTCCGCGCCGACGGGCGCGTTGGCACACGCAATGAAATCTGGA TCCTGCCGACCGTCGGCTGCGTCGGCAATCTCGCCGCGCGCGTTGCGCGGATCGCGGGCGAACGCCATGCCGGGCGCGTC GACGGCGTCCACGCCTTCAAGCATCCCTTCGGCTGTTCGCAGCTCGGTGATGATCTGGGCCATACGCGCAAGCTGCTCGC GGCGCTTGCGCAGCACCCCAATGCCGGCGGCGTGCTCATCGTCGCCCTGGGGTGCGAGAGCAACCAGCTCGGCGCGCTGC TCGACCTGATTCCCGCCGATCGCCGCGCGCATATCCGCACGCTGTCGGCGCAGGCGGTTGAGGACGACGAAGCCGCGTGC CTCGCGCTGATCGACGAGCTGGTCGAGCATTGCGGCGATATGGTGCGGACCGAAGCGCCGCTGTCGAAGCTGGTGCTTGG GGTCAAATGCGGCGGATCGGACGGGCTTTCGGGCCTCACCGCCAACCCCCTCGTCGGGCGCATGGCCGATGCGGTCGCGG CGGCGGGCGGCAAGGTGGTGCTGACCGAGATCCCAGAGATTTTCGGTGCCGAACAATTGTTGATGGATCGCGCTGTGTCG CGCGCGGTATTCGACGATACGGTCGCGCTCGTCCACGACTTCAAGGACTATTTCATCCGCCACGGCGAGCCGGTGAGCGA AAATCCCTCACCCGGCAATATCGCCGGCGGGATCACGACGCTGGAGGAAAAGTCGCTCGGCGCGGTGCAAAAGGGCGGGC GGGTGCCGCTCGTCGATGTCCAGCGCTATGGCGGCGAGGCGCGCCTGCCCGGCCTGACCCTGCTCGAAGCACCGGGCAAC GACGCCGTCTCCTCGACCGCGCTGACCGCGGCGGGCGCGACGATCATCCTCTTCACCACCGGACGCGGCACCCCGCTCGG CTTTCCGGCGCCGACGCTCAAGATCGCGTCGAACAGCGACCTCGCGGCGCGCAAGGCGGGGTGGATCGACTTCGACGCGG GGCGAGTGCTGGACAACGGCTTCGAGCGGTCGGCCGAGGCCCTGCTCGACCTGATCGCCGCCACCGCTTCGGGCGCCCCG ACCAAAGCCGAAGCAAATGAGGAGCGCGACATCGCGATCTGGAAATCGGGCGTGACGCTTTAA
Upstream 100 bases:
>100_bases CGCACGCGCGTCGATAAATGCGCGCGCCACATTTTCCGGATCGCTGGTTGCCGCCATCTTTCCCATTTCCCTCTTCCGCG AAGCGGTGTAAGAGACACCG
Downstream 100 bases:
>100_bases TCGAGCGCGCGGAAGGTGAAATTGCGAAAGCGCGCCTCGCCGGCGCCCGCCGAATAGAGGCCGGGGCGCAGCATCAGGAA GCCGCCGCGCACATTATGGT
Product: Altronate dehydratase
Products: NA
Alternate protein names: Altronic acid hydratase [H]
Number of amino acids: Translated: 500; Mature: 499
Protein sequence:
>500_residues MSKASEYPMNRAIRIGDGDNVATAIADIAPGQLLFADEDIRAAAAVPRGHKIALAAIARGSPVVKYGFPIGRAAANIAPG EPVHRHNLATALGDKGDYHYSPQPVQAAAAAPSTAFRGYVRADGRVGTRNEIWILPTVGCVGNLAARVARIAGERHAGRV DGVHAFKHPFGCSQLGDDLGHTRKLLAALAQHPNAGGVLIVALGCESNQLGALLDLIPADRRAHIRTLSAQAVEDDEAAC LALIDELVEHCGDMVRTEAPLSKLVLGVKCGGSDGLSGLTANPLVGRMADAVAAAGGKVVLTEIPEIFGAEQLLMDRAVS RAVFDDTVALVHDFKDYFIRHGEPVSENPSPGNIAGGITTLEEKSLGAVQKGGRVPLVDVQRYGGEARLPGLTLLEAPGN DAVSSTALTAAGATIILFTTGRGTPLGFPAPTLKIASNSDLAARKAGWIDFDAGRVLDNGFERSAEALLDLIAATASGAP TKAEANEERDIAIWKSGVTL
Sequences:
>Translated_500_residues MSKASEYPMNRAIRIGDGDNVATAIADIAPGQLLFADEDIRAAAAVPRGHKIALAAIARGSPVVKYGFPIGRAAANIAPG EPVHRHNLATALGDKGDYHYSPQPVQAAAAAPSTAFRGYVRADGRVGTRNEIWILPTVGCVGNLAARVARIAGERHAGRV DGVHAFKHPFGCSQLGDDLGHTRKLLAALAQHPNAGGVLIVALGCESNQLGALLDLIPADRRAHIRTLSAQAVEDDEAAC LALIDELVEHCGDMVRTEAPLSKLVLGVKCGGSDGLSGLTANPLVGRMADAVAAAGGKVVLTEIPEIFGAEQLLMDRAVS RAVFDDTVALVHDFKDYFIRHGEPVSENPSPGNIAGGITTLEEKSLGAVQKGGRVPLVDVQRYGGEARLPGLTLLEAPGN DAVSSTALTAAGATIILFTTGRGTPLGFPAPTLKIASNSDLAARKAGWIDFDAGRVLDNGFERSAEALLDLIAATASGAP TKAEANEERDIAIWKSGVTL >Mature_499_residues SKASEYPMNRAIRIGDGDNVATAIADIAPGQLLFADEDIRAAAAVPRGHKIALAAIARGSPVVKYGFPIGRAAANIAPGE PVHRHNLATALGDKGDYHYSPQPVQAAAAAPSTAFRGYVRADGRVGTRNEIWILPTVGCVGNLAARVARIAGERHAGRVD GVHAFKHPFGCSQLGDDLGHTRKLLAALAQHPNAGGVLIVALGCESNQLGALLDLIPADRRAHIRTLSAQAVEDDEAACL ALIDELVEHCGDMVRTEAPLSKLVLGVKCGGSDGLSGLTANPLVGRMADAVAAAGGKVVLTEIPEIFGAEQLLMDRAVSR AVFDDTVALVHDFKDYFIRHGEPVSENPSPGNIAGGITTLEEKSLGAVQKGGRVPLVDVQRYGGEARLPGLTLLEAPGND AVSSTALTAAGATIILFTTGRGTPLGFPAPTLKIASNSDLAARKAGWIDFDAGRVLDNGFERSAEALLDLIAATASGAPT KAEANEERDIAIWKSGVTL
Specific function: Hexuronate conversion to KDG. [C]
COG id: COG2721
COG function: function code G; Altronate dehydratase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the uxaA family [H]
Homologues:
Organism=Escherichia coli, GI1789475, Length=494, Percent_Identity=48.582995951417, Blast_Score=457, Evalue=1e-130, Organism=Escherichia coli, GI1789516, Length=495, Percent_Identity=30.5050505050505, Blast_Score=198, Evalue=7e-52,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007392 - InterPro: IPR013974 [H]
Pfam domain/function: PF04295 GD_AH_C; PF08666 SAF [H]
EC number: =4.2.1.7 [H]
Molecular weight: Translated: 51855; Mature: 51724
Theoretical pI: Translated: 6.20; Mature: 6.20
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKASEYPMNRAIRIGDGDNVATAIADIAPGQLLFADEDIRAAAAVPRGHKIALAAIARG CCCCCCCCCCCEEEECCCCCHHHHHHHCCCCEEEEECCCCHHHHCCCCCCEEEEEEEECC SPVVKYGFPIGRAAANIAPGEPVHRHNLATALGDKGDYHYSPQPVQAAAAAPSTAFRGYV CCEEEECCCCCHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCHHHCCEE RADGRVGTRNEIWILPTVGCVGNLAARVARIAGERHAGRVDGVHAFKHPFGCSQLGDDLG EECCCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCHHHHHHHHH HTRKLLAALAQHPNAGGVLIVALGCESNQLGALLDLIPADRRAHIRTLSAQAVEDDEAAC HHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHCCCCCHHHHEEHHHHHCCCCHHHH LALIDELVEHCGDMVRTEAPLSKLVLGVKCGGSDGLSGLTANPLVGRMADAVAAAGGKVV HHHHHHHHHHHHHHHHCCCCHHHEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEE LTEIPEIFGAEQLLMDRAVSRAVFDDTVALVHDFKDYFIRHGEPVSENPSPGNIAGGITT EECCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEE LEEKSLGAVQKGGRVPLVDVQRYGGEARLPGLTLLEAPGNDAVSSTALTAAGATIILFTT HHHHHCCHHHCCCCCCEEEHHHCCCCCCCCCEEEEECCCCCCHHHHHHEECCCEEEEEEC GRGTPLGFPAPTLKIASNSDLAARKAGWIDFDAGRVLDNGFERSAEALLDLIAATASGAP CCCCCCCCCCCCEEEECCCCCHHHHCCCEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCC TKAEANEERDIAIWKSGVTL CCCCCCCCCCEEEEECCCCC >Mature Secondary Structure SKASEYPMNRAIRIGDGDNVATAIADIAPGQLLFADEDIRAAAAVPRGHKIALAAIARG CCCCCCCCCCEEEECCCCCHHHHHHHCCCCEEEEECCCCHHHHCCCCCCEEEEEEEECC SPVVKYGFPIGRAAANIAPGEPVHRHNLATALGDKGDYHYSPQPVQAAAAAPSTAFRGYV CCEEEECCCCCHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCHHHCCEE RADGRVGTRNEIWILPTVGCVGNLAARVARIAGERHAGRVDGVHAFKHPFGCSQLGDDLG EECCCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCHHHHHHHHH HTRKLLAALAQHPNAGGVLIVALGCESNQLGALLDLIPADRRAHIRTLSAQAVEDDEAAC HHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHCCCCCHHHHEEHHHHHCCCCHHHH LALIDELVEHCGDMVRTEAPLSKLVLGVKCGGSDGLSGLTANPLVGRMADAVAAAGGKVV HHHHHHHHHHHHHHHHCCCCHHHEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEE LTEIPEIFGAEQLLMDRAVSRAVFDDTVALVHDFKDYFIRHGEPVSENPSPGNIAGGITT EECCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEE LEEKSLGAVQKGGRVPLVDVQRYGGEARLPGLTLLEAPGNDAVSSTALTAAGATIILFTT HHHHHCCHHHCCCCCCEEEHHHCCCCCCCCCEEEEECCCCCCHHHHHHEECCCEEEEEEC GRGTPLGFPAPTLKIASNSDLAARKAGWIDFDAGRVLDNGFERSAEALLDLIAATASGAP CCCCCCCCCCCCEEEECCCCCHHHHCCCEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCC TKAEANEERDIAIWKSGVTL CCCCCCCCCCEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9278503; 3038546 [H]