| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is viuA [H]
Identifier: 103488505
GI number: 103488505
Start: 3174203
End: 3176962
Strand: Direct
Name: viuA [H]
Synonym: Sala_3029
Alternate gene names: 103488505
Gene position: 3174203-3176962 (Clockwise)
Preceding gene: 103488504
Following gene: 103488506
Centisome position: 94.89
GC content: 64.38
Gene sequence:
>2760_bases ATGAAATCATCTTCCCTTCATGCTGCCCGCCTGCTGCGCACGACGGCGATGGGCGTGTCGATTGTGATCGCGAGCATGGC GGCGCCTGCGCTGGCGCAGGACAGCGGCGCCGATACGGCGACCGACGACAGCGGCGACGCGCCGATCGTCGTCACCGCGC AGGGCCGTTCGCAGCTTCTGTCCGACGTGCCCGTCGCCATTTCGGCGGTCAGCGCCGAAACGCTGCAGAACAGCGGCGCG AACGACATTCGCCAGCTCAATCAGGTGGCGCCGTCGCTGCTCGTTTCGTCGACCGGCAGCGAAGCCAATGGTTCGGCGCG TATCCGCGGCATCGGCACGGTCGGCGACAACCCCGGCCTCGAAAGCTCGGTCCCGGTCTTCATCGACGGCGTCTATCGCT CGCGTTCGGGCATCGGTCTCAACGAACTGGGCGAGATCGACCGGGTCGAGGTGCAGCGCGGACCGCAGGGCACGCTCGGC GGCCGCAACTCGTCGGCGGGCCTCATCAGCATCTATTCGAAAAAGCCCGATTTCCAGTTCGGCGCTTCGGGTGAAATCAC CTATGGCAATTATGATTATTGGCGCCTCGGCGGCAGCGTCACCGGGCCGATCAGCGACACGCTCGCCGCGCGCATCGACG GCATCTGGGTGAAGCGCGACGGCTTCTATCGCGACGCGACCAACAACACCGACGTCAACGACCGCGACCGTTATTTCACG CGCGGCCAGCTGTTGTTCGAGCCGACCGACGCGCTGTCGATCCGGCTGATCGCCGACTATACCTTCCGCGATGAAAAATG CTGCGCCGCCACCTATGTCGACAGCAGCGTCAATCCTTTCATCGGCAACCTCAACAATCCGGGCGTGCCGGTTACGCCGA CGACGAACAACATCATCCGGGTGCTCGCCGACCTCGGTCAGCCGCTCAGCGCTTTCAACCAGGGATACAGCCGCGACATT TCGGTCACCCCCGGCCGCAGCTATGCGGGCGAAACCAAGGACTACGGCTTCTCGGGCCAGATCGATTATGATTTCGGCGG CGCGACGCTGACCTCGATCACCGCTTATCGCGAATATCGGTCGAGCCAGGCGTCGGACACCGACTATGGCACGGTCGACA TCCTCTATCGTGCGCCCGACGATGACGCCTATCGCCAGTTCCACACCTTCACGCAGGAACTGCGCCTCAACGGCGAGGCG TTCGACGGCAAGCTCGACTGGCTCGTCGGCGGCTTCTTCGCCAATGAAAAGCTGACGGTGCGCGACAATCTGCGTTTCGG CAGCCAATATGGCCGCTTCGCCAATTGCCGCATCATTTCGGGCGGCGGGCTGGCCGGTCTCTATTCGCCGACGTCGCCGC TCTGCGTCGTTCCCGGCGTCGGTCCCGCGACCATCGCCGCCGCCAGCGGCGCGTCGGGGCCCGACATCGTCGCGGCTTTC ACCGCCCTCGACGGCCTCAACGACCGTGGCACAATCAACGACCGCTATCGGCAGAATGGCACGAACTGGGCGCTGTTCAC GCACAATATCGTCCACATCACCGACCAGCTCGATTTCACCTTCGGCGTGCGTTACACGCACGACAAGAAGAAATTCTCGG CGGCCTTCACCAACGACAACACGGCCTGCACGACGATCCAGGGCCTCGTGCTCGACGATCTGGCGAGCCCCAACGCCACC GCGCGCGCGCTCGCGGGCGCGCTGATCGGGCTCGGTTGCCAGGGCAATTCGACCGCCGAGCTCAACGGCGTTTCGATCCG CGACAGCCGCAGCGAGGACGAATGGACCGGCACCGGCATTCTGTCGTACAAGCCGATGGACGACCTTCTGCTCTATGCCA GCTATTCGCGCGGCTACAAGGCGGGCGGCTTCAACCTCGACCGCTCGGCGCTCAAGTCGCCGATCCTGCCGTTCGGCGGG CAGGCCGGGGCGCAGTCGCTCGTCGGCAACCTCCAGTTCGATCCCGAACTGGTCGATGCCTATGAAATCGGCGCCAAATA TTCGACGGGCCCGTTCAGCCTCAGCCTTTCGGCCTTCCGGTCCGATTTCAGCAACTTCCAGCTGAACACCTTCAACGGCA GCGTGTTTATCGTCCAGACGGTCAACGGCTGCGGCGGCGACCTTGTCGGTGGTCCCGATGCGGATACGGACACCAGCAAC ACGACCGGCGCGTGCGCCACCGACGATGTCAGCTGGGGCGTCCGTGCACAGGGTTTCGAGCTTGAAGCCTCGCTGGTTCC GGCGCGCAATTTCCGCATGGCGGCGGGCCTGACCTATGCGCGCACCAAATATCGCAAGGACCTGGTCGGCAACAAGAATG GCGACCCGCTCGACGCGGCGCTGCGCAAGCTGCCCGGCGACAATCTGTCGAACGCGCCCGAACTCGTCGCGACCGGCAGC ATCAGCTGGACGCCCGACATCGGCAGCAGCGGCCTCACCGGCCTCGTCTATATCGACGGCCGCATGACCAGCGATTACAA CACCGGCTCCGACCTCTTCCCGCAAAAGGAACAGGACGGCTATGCGCTGTTCAACGCGCGCCTCGGCGTGCGCGGTCCCG ACGAGAAATGGGCCGTCGAACTCTGGGCGCAGAATCTGTTCAACAAGCAATATGCGCAGGTTGCGTTCAACTCGCCCTTC CAGGCGGGTGCATCGTCGGCACCCTTCACCGACCCGCAATTTCCGGGCGGGCGCCAGATCTTCTCGCAGTTCCTCGCCGA ACCGCGCACCTATGGCGTGACGTTGCGCGGCAAGTTCTGA
Upstream 100 bases:
>100_bases AAAAACGACGCAAATGCTGGCGTTTCGCTGGAATGGCGGCGCAATTGGGTTATGTTCCCGCCGCAACAAAAATAATGAAA TGTTGAGAGGAGTGCCCGAA
Downstream 100 bases:
>100_bases CCGCGCTTCGGGCATGACATTTCGGGGGCGGGGCCGTTGGTCCCGCCCCCTTTTCATTTGCGCGGCGACCTCGCCCCGTC ACCGGTGGCCGCGACCCGGA
Product: TonB-dependent receptor
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 919; Mature: 919
Protein sequence:
>919_residues MKSSSLHAARLLRTTAMGVSIVIASMAAPALAQDSGADTATDDSGDAPIVVTAQGRSQLLSDVPVAISAVSAETLQNSGA NDIRQLNQVAPSLLVSSTGSEANGSARIRGIGTVGDNPGLESSVPVFIDGVYRSRSGIGLNELGEIDRVEVQRGPQGTLG GRNSSAGLISIYSKKPDFQFGASGEITYGNYDYWRLGGSVTGPISDTLAARIDGIWVKRDGFYRDATNNTDVNDRDRYFT RGQLLFEPTDALSIRLIADYTFRDEKCCAATYVDSSVNPFIGNLNNPGVPVTPTTNNIIRVLADLGQPLSAFNQGYSRDI SVTPGRSYAGETKDYGFSGQIDYDFGGATLTSITAYREYRSSQASDTDYGTVDILYRAPDDDAYRQFHTFTQELRLNGEA FDGKLDWLVGGFFANEKLTVRDNLRFGSQYGRFANCRIISGGGLAGLYSPTSPLCVVPGVGPATIAAASGASGPDIVAAF TALDGLNDRGTINDRYRQNGTNWALFTHNIVHITDQLDFTFGVRYTHDKKKFSAAFTNDNTACTTIQGLVLDDLASPNAT ARALAGALIGLGCQGNSTAELNGVSIRDSRSEDEWTGTGILSYKPMDDLLLYASYSRGYKAGGFNLDRSALKSPILPFGG QAGAQSLVGNLQFDPELVDAYEIGAKYSTGPFSLSLSAFRSDFSNFQLNTFNGSVFIVQTVNGCGGDLVGGPDADTDTSN TTGACATDDVSWGVRAQGFELEASLVPARNFRMAAGLTYARTKYRKDLVGNKNGDPLDAALRKLPGDNLSNAPELVATGS ISWTPDIGSSGLTGLVYIDGRMTSDYNTGSDLFPQKEQDGYALFNARLGVRGPDEKWAVELWAQNLFNKQYAQVAFNSPF QAGASSAPFTDPQFPGGRQIFSQFLAEPRTYGVTLRGKF
Sequences:
>Translated_919_residues MKSSSLHAARLLRTTAMGVSIVIASMAAPALAQDSGADTATDDSGDAPIVVTAQGRSQLLSDVPVAISAVSAETLQNSGA NDIRQLNQVAPSLLVSSTGSEANGSARIRGIGTVGDNPGLESSVPVFIDGVYRSRSGIGLNELGEIDRVEVQRGPQGTLG GRNSSAGLISIYSKKPDFQFGASGEITYGNYDYWRLGGSVTGPISDTLAARIDGIWVKRDGFYRDATNNTDVNDRDRYFT RGQLLFEPTDALSIRLIADYTFRDEKCCAATYVDSSVNPFIGNLNNPGVPVTPTTNNIIRVLADLGQPLSAFNQGYSRDI SVTPGRSYAGETKDYGFSGQIDYDFGGATLTSITAYREYRSSQASDTDYGTVDILYRAPDDDAYRQFHTFTQELRLNGEA FDGKLDWLVGGFFANEKLTVRDNLRFGSQYGRFANCRIISGGGLAGLYSPTSPLCVVPGVGPATIAAASGASGPDIVAAF TALDGLNDRGTINDRYRQNGTNWALFTHNIVHITDQLDFTFGVRYTHDKKKFSAAFTNDNTACTTIQGLVLDDLASPNAT ARALAGALIGLGCQGNSTAELNGVSIRDSRSEDEWTGTGILSYKPMDDLLLYASYSRGYKAGGFNLDRSALKSPILPFGG QAGAQSLVGNLQFDPELVDAYEIGAKYSTGPFSLSLSAFRSDFSNFQLNTFNGSVFIVQTVNGCGGDLVGGPDADTDTSN TTGACATDDVSWGVRAQGFELEASLVPARNFRMAAGLTYARTKYRKDLVGNKNGDPLDAALRKLPGDNLSNAPELVATGS ISWTPDIGSSGLTGLVYIDGRMTSDYNTGSDLFPQKEQDGYALFNARLGVRGPDEKWAVELWAQNLFNKQYAQVAFNSPF QAGASSAPFTDPQFPGGRQIFSQFLAEPRTYGVTLRGKF >Mature_919_residues MKSSSLHAARLLRTTAMGVSIVIASMAAPALAQDSGADTATDDSGDAPIVVTAQGRSQLLSDVPVAISAVSAETLQNSGA NDIRQLNQVAPSLLVSSTGSEANGSARIRGIGTVGDNPGLESSVPVFIDGVYRSRSGIGLNELGEIDRVEVQRGPQGTLG GRNSSAGLISIYSKKPDFQFGASGEITYGNYDYWRLGGSVTGPISDTLAARIDGIWVKRDGFYRDATNNTDVNDRDRYFT RGQLLFEPTDALSIRLIADYTFRDEKCCAATYVDSSVNPFIGNLNNPGVPVTPTTNNIIRVLADLGQPLSAFNQGYSRDI SVTPGRSYAGETKDYGFSGQIDYDFGGATLTSITAYREYRSSQASDTDYGTVDILYRAPDDDAYRQFHTFTQELRLNGEA FDGKLDWLVGGFFANEKLTVRDNLRFGSQYGRFANCRIISGGGLAGLYSPTSPLCVVPGVGPATIAAASGASGPDIVAAF TALDGLNDRGTINDRYRQNGTNWALFTHNIVHITDQLDFTFGVRYTHDKKKFSAAFTNDNTACTTIQGLVLDDLASPNAT ARALAGALIGLGCQGNSTAELNGVSIRDSRSEDEWTGTGILSYKPMDDLLLYASYSRGYKAGGFNLDRSALKSPILPFGG QAGAQSLVGNLQFDPELVDAYEIGAKYSTGPFSLSLSAFRSDFSNFQLNTFNGSVFIVQTVNGCGGDLVGGPDADTDTSN TTGACATDDVSWGVRAQGFELEASLVPARNFRMAAGLTYARTKYRKDLVGNKNGDPLDAALRKLPGDNLSNAPELVATGS ISWTPDIGSSGLTGLVYIDGRMTSDYNTGSDLFPQKEQDGYALFNARLGVRGPDEKWAVELWAQNLFNKQYAQVAFNSPF QAGASSAPFTDPQFPGGRQIFSQFLAEPRTYGVTLRGKF
Specific function: Receptor for ferric vibriobactin [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug [H]
EC number: NA
Molecular weight: Translated: 98168; Mature: 98168
Theoretical pI: Translated: 4.67; Mature: 4.67
Prosite motif: PS01156 TONB_DEPENDENT_REC_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKSSSLHAARLLRTTAMGVSIVIASMAAPALAQDSGADTATDDSGDAPIVVTAQGRSQLL CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHH SDVPVAISAVSAETLQNSGANDIRQLNQVAPSLLVSSTGSEANGSARIRGIGTVGDNPGL HCCCCEEEHHHHHHHHCCCHHHHHHHHHHHHHHEEECCCCCCCCCEEEEEEEECCCCCCC ESSVPVFIDGVYRSRSGIGLNELGEIDRVEVQRGPQGTLGGRNSSAGLISIYSKKPDFQF CCCCCEEEEEEECCCCCCCHHHHCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCC GASGEITYGNYDYWRLGGSVTGPISDTLAARIDGIWVKRDGFYRDATNNTDVNDRDRYFT CCCCEEEECCCEEEEECCCCCCCCHHHHHHHHCCEEEECCCCEECCCCCCCCCCCCCEEE RGQLLFEPTDALSIRLIADYTFRDEKCCAATYVDSSVNPFIGNLNNPGVPVTPTTNNIIR CCEEEECCCCCEEEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCEECCCCCHHHHH VLADLGQPLSAFNQGYSRDISVTPGRSYAGETKDYGFSGQIDYDFGGATLTSITAYREYR HHHHCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHH SSQASDTDYGTVDILYRAPDDDAYRQFHTFTQELRLNGEAFDGKLDWLVGGFFANEKLTV CCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEECCCEEEE RDNLRFGSQYGRFANCRIISGGGLAGLYSPTSPLCVVPGVGPATIAAASGASGPDIVAAF ECCCCCCCCCCCEEEEEEECCCCEEECCCCCCCEEEECCCCHHHEEECCCCCCCHHEEHH TALDGLNDRGTINDRYRQNGTNWALFTHNIVHITDQLDFTFGVRYTHDKKKFSAAFTNDN HHHCCCCCCCCCCHHHHCCCCEEEEEEEEEEEEEECCCEEEEEEEECCCHHEEEEECCCC TACTTIQGLVLDDLASPNATARALAGALIGLGCQGNSTAELNGVSIRDSRSEDEWTGTGI CEEEEEEEEHHHHCCCCCHHHHHHHHHHEEECCCCCCCEEECCEEEECCCCCCCCCCCEE LSYKPMDDLLLYASYSRGYKAGGFNLDRSALKSPILPFGGQAGAQSLVGNLQFDPELVDA EEECCHHHEEEEEECCCCCCCCCCCCCHHHHCCCCCCCCCCCCHHHHHCCCCCCHHHHHH YEIGAKYSTGPFSLSLSAFRSDFSNFQLNTFNGSVFIVQTVNGCGGDLVGGPDADTDTSN HHCCCCCCCCCCEEEHHHHHCCCCCEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCC TTGACATDDVSWGVRAQGFELEASLVPARNFRMAAGLTYARTKYRKDLVGNKNGDPLDAA CCCCEECCCCCCCCEECCEEEEEEECCCCCEEEHHCCHHHHHHHHHHHCCCCCCCHHHHH LRKLPGDNLSNAPELVATGSISWTPDIGSSGLTGLVYIDGRMTSDYNTGSDLFPQKEQDG HHHCCCCCCCCCCCEEEECCEEECCCCCCCCCEEEEEECCEEECCCCCCCCCCCCCCCCC YALFNARLGVRGPDEKWAVELWAQNLFNKQYAQVAFNSPFQAGASSAPFTDPQFPGGRQI EEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCHHHH FSQFLAEPRTYGVTLRGKF HHHHHCCCCCEEEEEEECC >Mature Secondary Structure MKSSSLHAARLLRTTAMGVSIVIASMAAPALAQDSGADTATDDSGDAPIVVTAQGRSQLL CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHH SDVPVAISAVSAETLQNSGANDIRQLNQVAPSLLVSSTGSEANGSARIRGIGTVGDNPGL HCCCCEEEHHHHHHHHCCCHHHHHHHHHHHHHHEEECCCCCCCCCEEEEEEEECCCCCCC ESSVPVFIDGVYRSRSGIGLNELGEIDRVEVQRGPQGTLGGRNSSAGLISIYSKKPDFQF CCCCCEEEEEEECCCCCCCHHHHCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCC GASGEITYGNYDYWRLGGSVTGPISDTLAARIDGIWVKRDGFYRDATNNTDVNDRDRYFT CCCCEEEECCCEEEEECCCCCCCCHHHHHHHHCCEEEECCCCEECCCCCCCCCCCCCEEE RGQLLFEPTDALSIRLIADYTFRDEKCCAATYVDSSVNPFIGNLNNPGVPVTPTTNNIIR CCEEEECCCCCEEEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCEECCCCCHHHHH VLADLGQPLSAFNQGYSRDISVTPGRSYAGETKDYGFSGQIDYDFGGATLTSITAYREYR HHHHCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHH SSQASDTDYGTVDILYRAPDDDAYRQFHTFTQELRLNGEAFDGKLDWLVGGFFANEKLTV CCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEECCCEEEE RDNLRFGSQYGRFANCRIISGGGLAGLYSPTSPLCVVPGVGPATIAAASGASGPDIVAAF ECCCCCCCCCCCEEEEEEECCCCEEECCCCCCCEEEECCCCHHHEEECCCCCCCHHEEHH TALDGLNDRGTINDRYRQNGTNWALFTHNIVHITDQLDFTFGVRYTHDKKKFSAAFTNDN HHHCCCCCCCCCCHHHHCCCCEEEEEEEEEEEEEECCCEEEEEEEECCCHHEEEEECCCC TACTTIQGLVLDDLASPNATARALAGALIGLGCQGNSTAELNGVSIRDSRSEDEWTGTGI CEEEEEEEEHHHHCCCCCHHHHHHHHHHEEECCCCCCCEEECCEEEECCCCCCCCCCCEE LSYKPMDDLLLYASYSRGYKAGGFNLDRSALKSPILPFGGQAGAQSLVGNLQFDPELVDA EEECCHHHEEEEEECCCCCCCCCCCCCHHHHCCCCCCCCCCCCHHHHHCCCCCCHHHHHH YEIGAKYSTGPFSLSLSAFRSDFSNFQLNTFNGSVFIVQTVNGCGGDLVGGPDADTDTSN HHCCCCCCCCCCEEEHHHHHCCCCCEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCC TTGACATDDVSWGVRAQGFELEASLVPARNFRMAAGLTYARTKYRKDLVGNKNGDPLDAA CCCCEECCCCCCCCEECCEEEEEEECCCCCEEEHHCCHHHHHHHHHHHCCCCCCCHHHHH LRKLPGDNLSNAPELVATGSISWTPDIGSSGLTGLVYIDGRMTSDYNTGSDLFPQKEQDG HHHCCCCCCCCCCCEEEECCEEECCCCCCCCCEEEEEECCEEECCCCCCCCCCCCCCCCC YALFNARLGVRGPDEKWAVELWAQNLFNKQYAQVAFNSPFQAGASSAPFTDPQFPGGRQI EEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCHHHH FSQFLAEPRTYGVTLRGKF HHHHHCCCCCEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1317381 [H]