| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103488488
Identifier: 103488488
GI number: 103488488
Start: 3151728
End: 3152789
Strand: Reverse
Name: 103488488
Synonym: Sala_3011
Alternate gene names: NA
Gene position: 3152789-3151728 (Counterclockwise)
Preceding gene: 103488489
Following gene: 103488487
Centisome position: 94.25
GC content: 67.89
Gene sequence:
>1062_bases ATGGCAAGGGCGATGACGACACCAACGACATGGCTGGAACAGGCGCGCGACGCGCACCGCCGTGGCGACGTCGCGGCGGA GACGGCAGCGCTCGACGGCGCGATCCACGCCGACCGCGGCAATGTCGCCGCGCTGCTCGCCATGGCCGAACTCAAGCGGC GGCTCGCCGACGACCGCGCAGCGGGCAGCTATTACCGCCTGGCGCTCACCACCGCCGTGCAGGCGCGCAGCGTCCCGCCG GCGCTTCATCCCGGCCTTCAGCGCGCCGAGCAATTCCTCGCCGACACCGAGCGCGCCTTTGCCGACCATCTGCTCGGCCA GCTACGAAGTGCGGGCATCGATACAAGGAACGCCGCGCCGCGTGTCGCCGAGGCGCTGCGAATGCTTGCGGGCGAACAGC CGCTCTATCTGCAACAGCCGAGCATGTTCTATTTTCCGGGTCTCGCCCAGCGCCCCTTTTTCGAGCGGTCCGGTTTCGAT TGGGCGGAAGCGGTCGAGGCGGCGACCGACGCGATCCGCGCCGAGTTGCTCGCGATGATCGACGGCGCGACCGATCCTTT CGGACCCTATGTCACTACCGCCCCCGGTCGCCCGCCGCCGAACAACCCGCTGCTCGACAAGCCCGACTGGGGCGCCGCCT GGCTCTGGAAGGATGGCGCGATCGCCGACGGCATGGCGGGTCTATGCCCCGCGACCCTCGCCGCGCTCGAACTGGCGCCG CAGCCCGTCATCCCGAACCGCGCGCCGATCGCGCTCTTTTCGCGCCTCATGCCCGGTACGCATATCCAGTCGCACCACGG GTTGCTCAATACGCGCCTGATCTGTCATCTGCCGCTGATCGTTCCCGATGGCTGCGGCCTGCGCGTCGGCGCCGAAACGC GCGAATGGCGCGAAGGCGAGCTGATGATCTTCGACGACAGTTTCGAGCATGAGGCGTGGAACCACGGGGCGAGCGACCGC ACCGTCCTGCTGTTCGAAATCTGGCGCCCCGACATCGATATCGACGAGCGCGAACAATTGACGCGCATCTTCGCGGCGAT CGACACCTATGGCGAACAATAG
Upstream 100 bases:
>100_bases GTCGAGTTCGACCAGGCGGGATCGAAACGCGTGCTCGACAGTTTCGTCCGCGCCGCCTGAACGCGCGGGCCCTCTGCTTG CAAAGGCCGGGTGCCGCGTT
Downstream 100 bases:
>100_bases ACAGGAACGGGAAGACGATGACCAACGCAGGCATGGACGCCGACATCTACGGCGCCTTTATCGAGCAGCTGCAACGCTAT GTCCGCGAACGGCTGATCCC
Product: aspartyl/asparaginyl beta-hydroxylase
Products: NA
Alternate protein names: Beta-Hydroxylase; Peptide-Aspartate Beta-Dioxygenase; Beta-Hydroxylase Aspartyl/Asparaginyl Family; Aspartyl/Asparaginyl Beta-Hydroxylase Family Protein; Aspartyl/Asparaginyl-Beta-Hydroxylase; Hydroxylase; Aspartyl/Asparaginyl Beta-Hydroxylase Family; Lipopolysaccharide Biosynthetic; Beta-Hydroxylase Aspartyl/Asparaginyl Family Protein
Number of amino acids: Translated: 353; Mature: 352
Protein sequence:
>353_residues MARAMTTPTTWLEQARDAHRRGDVAAETAALDGAIHADRGNVAALLAMAELKRRLADDRAAGSYYRLALTTAVQARSVPP ALHPGLQRAEQFLADTERAFADHLLGQLRSAGIDTRNAAPRVAEALRMLAGEQPLYLQQPSMFYFPGLAQRPFFERSGFD WAEAVEAATDAIRAELLAMIDGATDPFGPYVTTAPGRPPPNNPLLDKPDWGAAWLWKDGAIADGMAGLCPATLAALELAP QPVIPNRAPIALFSRLMPGTHIQSHHGLLNTRLICHLPLIVPDGCGLRVGAETREWREGELMIFDDSFEHEAWNHGASDR TVLLFEIWRPDIDIDEREQLTRIFAAIDTYGEQ
Sequences:
>Translated_353_residues MARAMTTPTTWLEQARDAHRRGDVAAETAALDGAIHADRGNVAALLAMAELKRRLADDRAAGSYYRLALTTAVQARSVPP ALHPGLQRAEQFLADTERAFADHLLGQLRSAGIDTRNAAPRVAEALRMLAGEQPLYLQQPSMFYFPGLAQRPFFERSGFD WAEAVEAATDAIRAELLAMIDGATDPFGPYVTTAPGRPPPNNPLLDKPDWGAAWLWKDGAIADGMAGLCPATLAALELAP QPVIPNRAPIALFSRLMPGTHIQSHHGLLNTRLICHLPLIVPDGCGLRVGAETREWREGELMIFDDSFEHEAWNHGASDR TVLLFEIWRPDIDIDEREQLTRIFAAIDTYGEQ >Mature_352_residues ARAMTTPTTWLEQARDAHRRGDVAAETAALDGAIHADRGNVAALLAMAELKRRLADDRAAGSYYRLALTTAVQARSVPPA LHPGLQRAEQFLADTERAFADHLLGQLRSAGIDTRNAAPRVAEALRMLAGEQPLYLQQPSMFYFPGLAQRPFFERSGFDW AEAVEAATDAIRAELLAMIDGATDPFGPYVTTAPGRPPPNNPLLDKPDWGAAWLWKDGAIADGMAGLCPATLAALELAPQ PVIPNRAPIALFSRLMPGTHIQSHHGLLNTRLICHLPLIVPDGCGLRVGAETREWREGELMIFDDSFEHEAWNHGASDRT VLLFEIWRPDIDIDEREQLTRIFAAIDTYGEQ
Specific function: Unknown
COG id: COG3555
COG function: function code O; Aspartyl/asparaginyl beta-hydroxylase and related dioxygenases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI14589866, Length=209, Percent_Identity=33.0143540669856, Blast_Score=117, Evalue=2e-26, Organism=Homo sapiens, GI258613943, Length=209, Percent_Identity=33.0143540669856, Blast_Score=116, Evalue=3e-26, Organism=Homo sapiens, GI194328779, Length=216, Percent_Identity=31.0185185185185, Blast_Score=102, Evalue=5e-22, Organism=Homo sapiens, GI38708313, Length=218, Percent_Identity=29.8165137614679, Blast_Score=85, Evalue=1e-16, Organism=Caenorhabditis elegans, GI193210571, Length=223, Percent_Identity=26.457399103139, Blast_Score=71, Evalue=8e-13, Organism=Caenorhabditis elegans, GI17568771, Length=223, Percent_Identity=26.457399103139, Blast_Score=71, Evalue=8e-13, Organism=Caenorhabditis elegans, GI193210573, Length=223, Percent_Identity=26.457399103139, Blast_Score=71, Evalue=9e-13, Organism=Drosophila melanogaster, GI24654024, Length=212, Percent_Identity=33.4905660377358, Blast_Score=100, Evalue=2e-21,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38750; Mature: 38619
Theoretical pI: Translated: 5.00; Mature: 5.00
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARAMTTPTTWLEQARDAHRRGDVAAETAALDGAIHADRGNVAALLAMAELKRRLADDRA CCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCEECCCCCHHHHHHHHHHHHHHHHHHC AGSYYRLALTTAVQARSVPPALHPGLQRAEQFLADTERAFADHLLGQLRSAGIDTRNAAP CCCEEEEHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH RVAEALRMLAGEQPLYLQQPSMFYFPGLAQRPFFERSGFDWAEAVEAATDAIRAELLAMI HHHHHHHHHHCCCCEEEECCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH DGATDPFGPYVTTAPGRPPPNNPLLDKPDWGAAWLWKDGAIADGMAGLCPATLAALELAP CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCC QPVIPNRAPIALFSRLMPGTHIQSHHGLLNTRLICHLPLIVPDGCGLRVGAETREWREGE CCCCCCCCHHHHHHHHCCCCCCCHHCCHHHCEEEEEEEEEECCCCCEEECCCCCCCCCCC LMIFDDSFEHEAWNHGASDRTVLLFEIWRPDIDIDEREQLTRIFAAIDTYGEQ EEEECCCCCCHHHCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCC >Mature Secondary Structure ARAMTTPTTWLEQARDAHRRGDVAAETAALDGAIHADRGNVAALLAMAELKRRLADDRA CCCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCEECCCCCHHHHHHHHHHHHHHHHHHC AGSYYRLALTTAVQARSVPPALHPGLQRAEQFLADTERAFADHLLGQLRSAGIDTRNAAP CCCEEEEHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH RVAEALRMLAGEQPLYLQQPSMFYFPGLAQRPFFERSGFDWAEAVEAATDAIRAELLAMI HHHHHHHHHHCCCCEEEECCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH DGATDPFGPYVTTAPGRPPPNNPLLDKPDWGAAWLWKDGAIADGMAGLCPATLAALELAP CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCC QPVIPNRAPIALFSRLMPGTHIQSHHGLLNTRLICHLPLIVPDGCGLRVGAETREWREGE CCCCCCCCHHHHHHHHCCCCCCCHHCCHHHCEEEEEEEEEECCCCCEEECCCCCCCCCCC LMIFDDSFEHEAWNHGASDRTVLLFEIWRPDIDIDEREQLTRIFAAIDTYGEQ EEEECCCCCCHHHCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA