| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103488484
Identifier: 103488484
GI number: 103488484
Start: 3149026
End: 3149667
Strand: Reverse
Name: 103488484
Synonym: Sala_3007
Alternate gene names: NA
Gene position: 3149667-3149026 (Counterclockwise)
Preceding gene: 103488485
Following gene: 103488483
Centisome position: 94.16
GC content: 66.98
Gene sequence:
>642_bases ATGACCCGCCCGCTCGTCATCACCGATTGCGACGAGGTGCTGATGCACATGGTCGTGCCCTTCGCCGAATGGGTCGACGC CGAACATGGCGTGATCTTTCGCATCGAGGATGCGAGCTTTGCGAATGCGCTGAAGCGCAAGGAATGCGGCACGCCGCTCG AGGCCGCCGAGGTGTGGCCTTTGCTCGACGGCTTTTTCCGCGAGGAAATGACGCGGCAGTATCCGATCCCCGGCGCGCTG GCCGCGATGGCCGCGATCGGCGCCGAGGCCGACATCGTGGTGCTCACCAACGTCGGCCCCGAGCATCAGCAGGCGCGCAT CGACCAGCTCGCGCTCCACGATTTCCACGCGCCGGTGATCGGCAGCCGCGGCGGCAAGGGCGCGCCGGTGCGTCGCCTGA TCGAGCAATATCGGCCGCCCGTCGCGGTGTTCATCGACGATCTGGCGGGGCATCATCGCTCGGTCGCCGAGGAAGCGCCG GAGGTGTGGCGGCTTCATTTCGTCGGCGAACCCGCGATTGCCGGCAAGATTGCGGCTTCGCCGCACGCCCATGCGCGAAT CGACGATTGGAAAGCGGCCGAGCGCTGGATAATGGCGCGCCTCGCCGAAAAAATCCCCGCCCCGGCACCGCAGCCGGTTT AG
Upstream 100 bases:
>100_bases TCACCGCCCATGAAAACGACCTTGTCGCCTGCGCCGATGCGTTGCAGGTGCCCCCCGCCGGCCTCGCCGCCGCGGCCCTC AGACTCGAAGGATCCCCTGC
Downstream 100 bases:
>100_bases AAAGGACCCTTCATGGATATCGCCGCCAAAATCGCCGAACTCGGCCTCGAACTTCCGAAACCCGCCGCGCCGGTCGCCGC CTATGTGCCCGCGGTCGAAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 213; Mature: 212
Protein sequence:
>213_residues MTRPLVITDCDEVLMHMVVPFAEWVDAEHGVIFRIEDASFANALKRKECGTPLEAAEVWPLLDGFFREEMTRQYPIPGAL AAMAAIGAEADIVVLTNVGPEHQQARIDQLALHDFHAPVIGSRGGKGAPVRRLIEQYRPPVAVFIDDLAGHHRSVAEEAP EVWRLHFVGEPAIAGKIAASPHAHARIDDWKAAERWIMARLAEKIPAPAPQPV
Sequences:
>Translated_213_residues MTRPLVITDCDEVLMHMVVPFAEWVDAEHGVIFRIEDASFANALKRKECGTPLEAAEVWPLLDGFFREEMTRQYPIPGAL AAMAAIGAEADIVVLTNVGPEHQQARIDQLALHDFHAPVIGSRGGKGAPVRRLIEQYRPPVAVFIDDLAGHHRSVAEEAP EVWRLHFVGEPAIAGKIAASPHAHARIDDWKAAERWIMARLAEKIPAPAPQPV >Mature_212_residues TRPLVITDCDEVLMHMVVPFAEWVDAEHGVIFRIEDASFANALKRKECGTPLEAAEVWPLLDGFFREEMTRQYPIPGALA AMAAIGAEADIVVLTNVGPEHQQARIDQLALHDFHAPVIGSRGGKGAPVRRLIEQYRPPVAVFIDDLAGHHRSVAEEAPE VWRLHFVGEPAIAGKIAASPHAHARIDDWKAAERWIMARLAEKIPAPAPQPV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23458; Mature: 23327
Theoretical pI: Translated: 5.76; Mature: 5.76
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRPLVITDCDEVLMHMVVPFAEWVDAEHGVIFRIEDASFANALKRKECGTPLEAAEVWP CCCCEEEECHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCCHHHHHHHH LLDGFFREEMTRQYPIPGALAAMAAIGAEADIVVLTNVGPEHQQARIDQLALHDFHAPVI HHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCC GSRGGKGAPVRRLIEQYRPPVAVFIDDLAGHHRSVAEEAPEVWRLHFVGEPAIAGKIAAS CCCCCCCCHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHCHHHEEEEECCCCCCCCCCCCC PHAHARIDDWKAAERWIMARLAEKIPAPAPQPV CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure TRPLVITDCDEVLMHMVVPFAEWVDAEHGVIFRIEDASFANALKRKECGTPLEAAEVWP CCCEEEECHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCCHHHHHHHH LLDGFFREEMTRQYPIPGALAAMAAIGAEADIVVLTNVGPEHQQARIDQLALHDFHAPVI HHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCC GSRGGKGAPVRRLIEQYRPPVAVFIDDLAGHHRSVAEEAPEVWRLHFVGEPAIAGKIAAS CCCCCCCCHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHCHHHEEEEECCCCCCCCCCCCC PHAHARIDDWKAAERWIMARLAEKIPAPAPQPV CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA