Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103488484

Identifier: 103488484

GI number: 103488484

Start: 3149026

End: 3149667

Strand: Reverse

Name: 103488484

Synonym: Sala_3007

Alternate gene names: NA

Gene position: 3149667-3149026 (Counterclockwise)

Preceding gene: 103488485

Following gene: 103488483

Centisome position: 94.16

GC content: 66.98

Gene sequence:

>642_bases
ATGACCCGCCCGCTCGTCATCACCGATTGCGACGAGGTGCTGATGCACATGGTCGTGCCCTTCGCCGAATGGGTCGACGC
CGAACATGGCGTGATCTTTCGCATCGAGGATGCGAGCTTTGCGAATGCGCTGAAGCGCAAGGAATGCGGCACGCCGCTCG
AGGCCGCCGAGGTGTGGCCTTTGCTCGACGGCTTTTTCCGCGAGGAAATGACGCGGCAGTATCCGATCCCCGGCGCGCTG
GCCGCGATGGCCGCGATCGGCGCCGAGGCCGACATCGTGGTGCTCACCAACGTCGGCCCCGAGCATCAGCAGGCGCGCAT
CGACCAGCTCGCGCTCCACGATTTCCACGCGCCGGTGATCGGCAGCCGCGGCGGCAAGGGCGCGCCGGTGCGTCGCCTGA
TCGAGCAATATCGGCCGCCCGTCGCGGTGTTCATCGACGATCTGGCGGGGCATCATCGCTCGGTCGCCGAGGAAGCGCCG
GAGGTGTGGCGGCTTCATTTCGTCGGCGAACCCGCGATTGCCGGCAAGATTGCGGCTTCGCCGCACGCCCATGCGCGAAT
CGACGATTGGAAAGCGGCCGAGCGCTGGATAATGGCGCGCCTCGCCGAAAAAATCCCCGCCCCGGCACCGCAGCCGGTTT
AG

Upstream 100 bases:

>100_bases
TCACCGCCCATGAAAACGACCTTGTCGCCTGCGCCGATGCGTTGCAGGTGCCCCCCGCCGGCCTCGCCGCCGCGGCCCTC
AGACTCGAAGGATCCCCTGC

Downstream 100 bases:

>100_bases
AAAGGACCCTTCATGGATATCGCCGCCAAAATCGCCGAACTCGGCCTCGAACTTCCGAAACCCGCCGCGCCGGTCGCCGC
CTATGTGCCCGCGGTCGAAC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 213; Mature: 212

Protein sequence:

>213_residues
MTRPLVITDCDEVLMHMVVPFAEWVDAEHGVIFRIEDASFANALKRKECGTPLEAAEVWPLLDGFFREEMTRQYPIPGAL
AAMAAIGAEADIVVLTNVGPEHQQARIDQLALHDFHAPVIGSRGGKGAPVRRLIEQYRPPVAVFIDDLAGHHRSVAEEAP
EVWRLHFVGEPAIAGKIAASPHAHARIDDWKAAERWIMARLAEKIPAPAPQPV

Sequences:

>Translated_213_residues
MTRPLVITDCDEVLMHMVVPFAEWVDAEHGVIFRIEDASFANALKRKECGTPLEAAEVWPLLDGFFREEMTRQYPIPGAL
AAMAAIGAEADIVVLTNVGPEHQQARIDQLALHDFHAPVIGSRGGKGAPVRRLIEQYRPPVAVFIDDLAGHHRSVAEEAP
EVWRLHFVGEPAIAGKIAASPHAHARIDDWKAAERWIMARLAEKIPAPAPQPV
>Mature_212_residues
TRPLVITDCDEVLMHMVVPFAEWVDAEHGVIFRIEDASFANALKRKECGTPLEAAEVWPLLDGFFREEMTRQYPIPGALA
AMAAIGAEADIVVLTNVGPEHQQARIDQLALHDFHAPVIGSRGGKGAPVRRLIEQYRPPVAVFIDDLAGHHRSVAEEAPE
VWRLHFVGEPAIAGKIAASPHAHARIDDWKAAERWIMARLAEKIPAPAPQPV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23458; Mature: 23327

Theoretical pI: Translated: 5.76; Mature: 5.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRPLVITDCDEVLMHMVVPFAEWVDAEHGVIFRIEDASFANALKRKECGTPLEAAEVWP
CCCCEEEECHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCCHHHHHHHH
LLDGFFREEMTRQYPIPGALAAMAAIGAEADIVVLTNVGPEHQQARIDQLALHDFHAPVI
HHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCC
GSRGGKGAPVRRLIEQYRPPVAVFIDDLAGHHRSVAEEAPEVWRLHFVGEPAIAGKIAAS
CCCCCCCCHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHCHHHEEEEECCCCCCCCCCCCC
PHAHARIDDWKAAERWIMARLAEKIPAPAPQPV
CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
TRPLVITDCDEVLMHMVVPFAEWVDAEHGVIFRIEDASFANALKRKECGTPLEAAEVWP
CCCEEEECHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCCHHHHHHHH
LLDGFFREEMTRQYPIPGALAAMAAIGAEADIVVLTNVGPEHQQARIDQLALHDFHAPVI
HHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCC
GSRGGKGAPVRRLIEQYRPPVAVFIDDLAGHHRSVAEEAPEVWRLHFVGEPAIAGKIAAS
CCCCCCCCHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHCHHHEEEEECCCCCCCCCCCCC
PHAHARIDDWKAAERWIMARLAEKIPAPAPQPV
CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA