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The map label for this gene is yfdE [H]

Identifier: 103488357

GI number: 103488357

Start: 3031268

End: 3032395

Strand: Direct

Name: yfdE [H]

Synonym: Sala_2880

Alternate gene names: 103488357

Gene position: 3031268-3032395 (Clockwise)

Preceding gene: 103488356

Following gene: 103488358

Centisome position: 90.62

GC content: 68.09

Gene sequence:

>1128_bases
TTGCCTGATCCGAAACCGCTGGAGGGCATCCGCGTCGTCGAGCTGGCGCGGGTGCTCGCGGGCCCGTGGTGCGGGCAATT
GCTCGCCGATCTGGGAGCCGAGGTGGTCAAGGTCGAACGGCCGGGCGCGGGCGACGACACGCGCGAATGGGGGCCGCCCT
TCGTCACCGGCGACGATGGCGAGCATCTCGGCGCCGCCTATTACCACAGCTGCAACCGCGGCAAGCGCAGCGTCGCCGTC
GATATTGCGAGCGCCGAAGGGCAGGCCGAGGCGCGCGCGCTGCTCGCCGATGCCGATGTCGTCATCGAAAATTACAAGGT
CGGCGGGCTCGCCAAATATGGCCTCGACCCCGCGGCGCTGCGCGCCGATTTTCCGCGGCTGATCGTCTGCTCGATCACCG
GCTTCGGACAGACCGGCCCCTATGCGCACCGTGCGGGCTATGACTATATCATCCAGGCGATGAGCGGCTTCATGTCGCTG
ACCGGCGAGCCCGACGGGCCGCCGCAAAAGGCGGGGATCGCCTATGCCGACATTTTCACCGGTCTCTATTCGGCTGTGGC
GGTGCTCGCGGCGTTAAGGCGGCGTGACGTCACGGGATCGGGCGCGCATATCGACATGGCGCTGCTCGATTCGCAGGTGG
CGGTGCTCGCCAATCAGGCGGCCAATTTTCTCGCGAGCGGCGTCGCGCCGAAACGAATGGGCAATGCGCATGCCAATGTC
GTTCCCTATCAGGTCTTTGCCACCGCCGACGGTCAGCTGGTGATCGCGGTGGGCAACGACGCGCAATATCGCAGGCTCTG
CGCGATTCTGGGCGTGCCCGAATGGGGCGCGGATTCGCGCTTTGCCACCAATGCCGCGCGGCTGGCGAACCGCGACGAAC
TGATCCCGCTGCTTGCGGCGAAGATTGCGACCTGGGAGGCGCAGCCGCTGTCGCTGGCGCTCGAGGCCGAGGGTGTGCCC
GCGGGGCCGATCAACGACCTCGCGCAGCTGTTCGCCGACCCGCAGGTGATCGCGCGCGGGATGCGTTTCCGCCCCGACGG
CGCGGCGATCGACGGCGTGGCCAGTCCGATCGTCATTGACGGCGAACGCATGGTCGCGTCGGGCGGAGCGCCGCGGCTGG
GTGACTGA

Upstream 100 bases:

>100_bases
ATCCGCCACGCGGTGAATCTCGAAACGGTGAACACCTATGAAGGGACGCACGACGTCCACGCGCTGATCCTTGGCCGGGC
GATCACGGGCATTTCGGCCT

Downstream 100 bases:

>100_bases
CGCCGGGTTTCGGCCGGACCTGGCCGTCGCCGCGTCCCCAACCCGTTCGCATCGAGCGAAGTCAAGATGCCTCTCGGGCT
AGGCTTGATGCCGATGGGTG

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 375; Mature: 374

Protein sequence:

>375_residues
MPDPKPLEGIRVVELARVLAGPWCGQLLADLGAEVVKVERPGAGDDTREWGPPFVTGDDGEHLGAAYYHSCNRGKRSVAV
DIASAEGQAEARALLADADVVIENYKVGGLAKYGLDPAALRADFPRLIVCSITGFGQTGPYAHRAGYDYIIQAMSGFMSL
TGEPDGPPQKAGIAYADIFTGLYSAVAVLAALRRRDVTGSGAHIDMALLDSQVAVLANQAANFLASGVAPKRMGNAHANV
VPYQVFATADGQLVIAVGNDAQYRRLCAILGVPEWGADSRFATNAARLANRDELIPLLAAKIATWEAQPLSLALEAEGVP
AGPINDLAQLFADPQVIARGMRFRPDGAAIDGVASPIVIDGERMVASGGAPRLGD

Sequences:

>Translated_375_residues
MPDPKPLEGIRVVELARVLAGPWCGQLLADLGAEVVKVERPGAGDDTREWGPPFVTGDDGEHLGAAYYHSCNRGKRSVAV
DIASAEGQAEARALLADADVVIENYKVGGLAKYGLDPAALRADFPRLIVCSITGFGQTGPYAHRAGYDYIIQAMSGFMSL
TGEPDGPPQKAGIAYADIFTGLYSAVAVLAALRRRDVTGSGAHIDMALLDSQVAVLANQAANFLASGVAPKRMGNAHANV
VPYQVFATADGQLVIAVGNDAQYRRLCAILGVPEWGADSRFATNAARLANRDELIPLLAAKIATWEAQPLSLALEAEGVP
AGPINDLAQLFADPQVIARGMRFRPDGAAIDGVASPIVIDGERMVASGGAPRLGD
>Mature_374_residues
PDPKPLEGIRVVELARVLAGPWCGQLLADLGAEVVKVERPGAGDDTREWGPPFVTGDDGEHLGAAYYHSCNRGKRSVAVD
IASAEGQAEARALLADADVVIENYKVGGLAKYGLDPAALRADFPRLIVCSITGFGQTGPYAHRAGYDYIIQAMSGFMSLT
GEPDGPPQKAGIAYADIFTGLYSAVAVLAALRRRDVTGSGAHIDMALLDSQVAVLANQAANFLASGVAPKRMGNAHANVV
PYQVFATADGQLVIAVGNDAQYRRLCAILGVPEWGADSRFATNAARLANRDELIPLLAAKIATWEAQPLSLALEAEGVPA
GPINDLAQLFADPQVIARGMRFRPDGAAIDGVASPIVIDGERMVASGGAPRLGD

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=356, Percent_Identity=44.3820224719101, Blast_Score=311, Evalue=5e-85,
Organism=Homo sapiens, GI300863124, Length=342, Percent_Identity=45.6140350877193, Blast_Score=306, Evalue=2e-83,
Organism=Homo sapiens, GI13376042, Length=342, Percent_Identity=42.3976608187134, Blast_Score=275, Evalue=5e-74,
Organism=Homo sapiens, GI300863126, Length=356, Percent_Identity=38.4831460674157, Blast_Score=253, Evalue=1e-67,
Organism=Homo sapiens, GI42794625, Length=263, Percent_Identity=31.9391634980989, Blast_Score=115, Evalue=8e-26,
Organism=Homo sapiens, GI266456254, Length=263, Percent_Identity=31.9391634980989, Blast_Score=115, Evalue=8e-26,
Organism=Homo sapiens, GI266458397, Length=263, Percent_Identity=31.9391634980989, Blast_Score=114, Evalue=1e-25,
Organism=Homo sapiens, GI266458393, Length=263, Percent_Identity=31.9391634980989, Blast_Score=114, Evalue=2e-25,
Organism=Homo sapiens, GI266458395, Length=150, Percent_Identity=37.3333333333333, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI42822893, Length=150, Percent_Identity=37.3333333333333, Blast_Score=96, Evalue=5e-20,
Organism=Escherichia coli, GI87082093, Length=356, Percent_Identity=37.9213483146067, Blast_Score=242, Evalue=3e-65,
Organism=Escherichia coli, GI1788717, Length=357, Percent_Identity=27.7310924369748, Blast_Score=141, Evalue=7e-35,
Organism=Escherichia coli, GI1786222, Length=357, Percent_Identity=26.890756302521, Blast_Score=98, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI115535051, Length=272, Percent_Identity=29.7794117647059, Blast_Score=98, Evalue=7e-21,
Organism=Caenorhabditis elegans, GI32564160, Length=275, Percent_Identity=28.7272727272727, Blast_Score=93, Evalue=2e-19,
Organism=Drosophila melanogaster, GI24648431, Length=372, Percent_Identity=41.6666666666667, Blast_Score=290, Evalue=2e-78,
Organism=Drosophila melanogaster, GI24585488, Length=206, Percent_Identity=31.5533980582524, Blast_Score=99, Evalue=6e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 39221; Mature: 39090

Theoretical pI: Translated: 4.77; Mature: 4.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDPKPLEGIRVVELARVLAGPWCGQLLADLGAEVVKVERPGAGDDTREWGPPFVTGDDG
CCCCCCCCCHHHHHHHHHHHCCHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEECCCC
EHLGAAYYHSCNRGKRSVAVDIASAEGQAEARALLADADVVIENYKVGGLAKYGLDPAAL
CCCCHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHCCCEEEECCCCCCCHHCCCCHHHH
RADFPRLIVCSITGFGQTGPYAHRAGYDYIIQAMSGFMSLTGEPDGPPQKAGIAYADIFT
HCCCCEEEEEEEECCCCCCCCHHHCCHHHHHHHHHHHHEECCCCCCCCHHCCCHHHHHHH
GLYSAVAVLAALRRRDVTGSGAHIDMALLDSQVAVLANQAANFLASGVAPKRMGNAHANV
HHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCE
VPYQVFATADGQLVIAVGNDAQYRRLCAILGVPEWGADSRFATNAARLANRDELIPLLAA
EEEEEEEECCCEEEEEECCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHH
KIATWEAQPLSLALEAEGVPAGPINDLAQLFADPQVIARGMRFRPDGAAIDGVASPIVID
HHHCCCCCCEEEEEEECCCCCCCHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCEEEC
GERMVASGGAPRLGD
CCEEEECCCCCCCCC
>Mature Secondary Structure 
PDPKPLEGIRVVELARVLAGPWCGQLLADLGAEVVKVERPGAGDDTREWGPPFVTGDDG
CCCCCCCCHHHHHHHHHHHCCHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEECCCC
EHLGAAYYHSCNRGKRSVAVDIASAEGQAEARALLADADVVIENYKVGGLAKYGLDPAAL
CCCCHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHCCCEEEECCCCCCCHHCCCCHHHH
RADFPRLIVCSITGFGQTGPYAHRAGYDYIIQAMSGFMSLTGEPDGPPQKAGIAYADIFT
HCCCCEEEEEEEECCCCCCCCHHHCCHHHHHHHHHHHHEECCCCCCCCHHCCCHHHHHHH
GLYSAVAVLAALRRRDVTGSGAHIDMALLDSQVAVLANQAANFLASGVAPKRMGNAHANV
HHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCE
VPYQVFATADGQLVIAVGNDAQYRRLCAILGVPEWGADSRFATNAARLANRDELIPLLAA
EEEEEEEECCCEEEEEECCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHH
KIATWEAQPLSLALEAEGVPAGPINDLAQLFADPQVIARGMRFRPDGAAIDGVASPIVID
HHHCCCCCCEEEEEEECCCCCCCHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCEEEC
GERMVASGGAPRLGD
CCEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]