Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is yjeS [H]

Identifier: 103488345

GI number: 103488345

Start: 3020190

End: 3021242

Strand: Direct

Name: yjeS [H]

Synonym: Sala_2868

Alternate gene names: 103488345

Gene position: 3020190-3021242 (Clockwise)

Preceding gene: 103488340

Following gene: 103488346

Centisome position: 90.29

GC content: 69.9

Gene sequence:

>1053_bases
ATGGTTGCCGAAGCCTTGCCTTCCCTCGAAACCCGCCTGGAGGCGGCCGCACGCGCGCAGGGTTTCGTGGCTTTCGGCAT
CGCCGCTGCCGACGCCGCGCCGCAAACGGCCGCGCGTTTGCGGCAGTGGCTCGCCGACGGACACCACGGCGGGATGATCT
GGATGGAAAGCCGCGCCGAGCAGCGTGGATCGCCCAGGGGACTTTGGCCCGCGGTCCGCTCGGTGGTCGCGCTCGGCATG
AGCTATGCCCCCGCGCTCGATCCGCTCGCGCTCGCCGACCAGCCGGACCGCGGCCGCATTTCGGTCTATGCGCAGGGCGC
CGACTATCATGACGTCGTCAAAAAGGCGCTGAAGGCGACCGCGCGCTGGCTCGTTGCCGAGGCCCCGGACGCCGAGGTCA
AGGTGTTCGTCGACACCGCACCGGTGATGGAAAAGCCGCTCGCGGCGGCGGCGGGGCTCGGCTGGCAGGGCAGGCACAGC
AATCTCGTCAGCCGCGAGCATGGCAGCTGGTTGTTCCTGGGGGCGATTTACACGACACTCGACCTTGCGCCCTCGCGGGC
CGGCCGCGACCGCTGCGGCAGTTGCACGGCGTGCCAGCAAGCCTGCCCGACCGACGCCTTTCCCGCGCCCTATCGGCTCG
ATGCCCGGCGCTGTATCTCCTATCTCACGATCGAGCATGACGGGCCGATCCCGGACGAGTTCCGCCGCGCCATAGGCAAT
CGCATCTATGGCTGCGACGATTGCCTCGCCGTGTGTCCGTGGAACAAATTTGCAGGCGCGGCGCACCGCCACCGCGCCTT
TTTGCCGCGCGCCGAACTCGCGGCGCCGTCGCTTGCCGACCTGCTCGCGCTCGACGATGCGGGATTCCGCCAGGTCTTCG
CCGGCTCGCCGATCAAGCGGATCGGGCGCGGGCGCATGGTGCGCAACGCGGCGATCGCGGCGGGGAACAGCGGCGATGCG
CGCTTCGTCCCCGCGCTTCAAAGGCTGGCCGACGATGAATCGCCGATGGTCGCCGACGCCGCGCGCTGGGCGCTTGGCGA
ACTAGGGTCCTGA

Upstream 100 bases:

>100_bases
GAGGCCGTTCGCCTCGACGCTGAAATCGCTCAAATGCTGGTCCCCGATCGTCGCTCCCGCAGACTATGGCACGCTGCGAT
GGCTCGCGTATAGAGCGCCG

Downstream 100 bases:

>100_bases
CCCTAGAGCGCGATGACATGATATTGACCCACCGTGATTGCCCCCTGAAGTTCGTCGGCAAGAAGCGTCTCGCAGGACGG
GCTGGTTGCCCGGACCAGAG

Product: 4Fe-4S cluster binding

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 350; Mature: 350

Protein sequence:

>350_residues
MVAEALPSLETRLEAAARAQGFVAFGIAAADAAPQTAARLRQWLADGHHGGMIWMESRAEQRGSPRGLWPAVRSVVALGM
SYAPALDPLALADQPDRGRISVYAQGADYHDVVKKALKATARWLVAEAPDAEVKVFVDTAPVMEKPLAAAAGLGWQGRHS
NLVSREHGSWLFLGAIYTTLDLAPSRAGRDRCGSCTACQQACPTDAFPAPYRLDARRCISYLTIEHDGPIPDEFRRAIGN
RIYGCDDCLAVCPWNKFAGAAHRHRAFLPRAELAAPSLADLLALDDAGFRQVFAGSPIKRIGRGRMVRNAAIAAGNSGDA
RFVPALQRLADDESPMVADAARWALGELGS

Sequences:

>Translated_350_residues
MVAEALPSLETRLEAAARAQGFVAFGIAAADAAPQTAARLRQWLADGHHGGMIWMESRAEQRGSPRGLWPAVRSVVALGM
SYAPALDPLALADQPDRGRISVYAQGADYHDVVKKALKATARWLVAEAPDAEVKVFVDTAPVMEKPLAAAAGLGWQGRHS
NLVSREHGSWLFLGAIYTTLDLAPSRAGRDRCGSCTACQQACPTDAFPAPYRLDARRCISYLTIEHDGPIPDEFRRAIGN
RIYGCDDCLAVCPWNKFAGAAHRHRAFLPRAELAAPSLADLLALDDAGFRQVFAGSPIKRIGRGRMVRNAAIAAGNSGDA
RFVPALQRLADDESPMVADAARWALGELGS
>Mature_350_residues
MVAEALPSLETRLEAAARAQGFVAFGIAAADAAPQTAARLRQWLADGHHGGMIWMESRAEQRGSPRGLWPAVRSVVALGM
SYAPALDPLALADQPDRGRISVYAQGADYHDVVKKALKATARWLVAEAPDAEVKVFVDTAPVMEKPLAAAAGLGWQGRHS
NLVSREHGSWLFLGAIYTTLDLAPSRAGRDRCGSCTACQQACPTDAFPAPYRLDARRCISYLTIEHDGPIPDEFRRAIGN
RIYGCDDCLAVCPWNKFAGAAHRHRAFLPRAELAAPSLADLLALDDAGFRQVFAGSPIKRIGRGRMVRNAAIAAGNSGDA
RFVPALQRLADDESPMVADAARWALGELGS

Specific function: Unknown

COG id: COG1600

COG function: function code C; Uncharacterized Fe-S protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 4Fe-4S ferredoxin-type domain [H]

Homologues:

Organism=Escherichia coli, GI1790608, Length=344, Percent_Identity=38.953488372093, Blast_Score=254, Evalue=8e-69,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004453
- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR013542
- InterPro:   IPR009051 [H]

Pfam domain/function: PF08331 DUF1730 [H]

EC number: NA

Molecular weight: Translated: 37517; Mature: 37517

Theoretical pI: Translated: 8.01; Mature: 8.01

Prosite motif: PS50077 HEAT_REPEAT ; PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVAEALPSLETRLEAAARAQGFVAFGIAAADAAPQTAARLRQWLADGHHGGMIWMESRAE
CCCHHHHHHHHHHHHHHHHCCCEEEEEHHCCCCHHHHHHHHHHHHCCCCCCEEEECCHHH
QRGSPRGLWPAVRSVVALGMSYAPALDPLALADQPDRGRISVYAQGADYHDVVKKALKAT
HCCCCCCHHHHHHHHHHHCCCCCCCCCCHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHH
ARWLVAEAPDAEVKVFVDTAPVMEKPLAAAAGLGWQGRHSNLVSREHGSWLFLGAIYTTL
HHHHEECCCCCCEEEEEECCHHHHHHHHHHHCCCCCCCCCCCHHCCCCCEEEHHHHHHHH
DLAPSRAGRDRCGSCTACQQACPTDAFPAPYRLDARRCISYLTIEHDGPIPDEFRRAIGN
HCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHEEEECCCCCCHHHHHHHCC
RIYGCDDCLAVCPWNKFAGAAHRHRAFLPRAELAAPSLADLLALDDAGFRQVFAGSPIKR
CCCCCCCHHEECCCHHHHCHHHHHHHCCCHHHHCCCHHHHHHHHCCCCHHHHHCCCCHHH
IGRGRMVRNAAIAAGNSGDARFVPALQRLADDESPMVADAARWALGELGS
HHCCHHHHHHHEECCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCC
>Mature Secondary Structure
MVAEALPSLETRLEAAARAQGFVAFGIAAADAAPQTAARLRQWLADGHHGGMIWMESRAE
CCCHHHHHHHHHHHHHHHHCCCEEEEEHHCCCCHHHHHHHHHHHHCCCCCCEEEECCHHH
QRGSPRGLWPAVRSVVALGMSYAPALDPLALADQPDRGRISVYAQGADYHDVVKKALKAT
HCCCCCCHHHHHHHHHHHCCCCCCCCCCHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHH
ARWLVAEAPDAEVKVFVDTAPVMEKPLAAAAGLGWQGRHSNLVSREHGSWLFLGAIYTTL
HHHHEECCCCCCEEEEEECCHHHHHHHHHHHCCCCCCCCCCCHHCCCCCEEEHHHHHHHH
DLAPSRAGRDRCGSCTACQQACPTDAFPAPYRLDARRCISYLTIEHDGPIPDEFRRAIGN
HCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHEEEECCCCCCHHHHHHHCC
RIYGCDDCLAVCPWNKFAGAAHRHRAFLPRAELAAPSLADLLALDDAGFRQVFAGSPIKR
CCCCCCCHHEECCCHHHHCHHHHHHHCCCHHHHCCCHHHHHHHHCCCCHHHHHCCCCHHH
IGRGRMVRNAAIAAGNSGDARFVPALQRLADDESPMVADAARWALGELGS
HHCCHHHHHHHEECCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]