| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103488337
Identifier: 103488337
GI number: 103488337
Start: 3009326
End: 3012124
Strand: Direct
Name: 103488337
Synonym: Sala_2860
Alternate gene names: NA
Gene position: 3009326-3012124 (Clockwise)
Preceding gene: 103488336
Following gene: 103488338
Centisome position: 89.96
GC content: 69.7
Gene sequence:
>2799_bases ATGATCCGTGCGGACCGTTGCCGATGGCTGTCGGCGGTGTTCGCCGCGCTGGCGCTGGTCGGGGCGATGCTCTCCGCTGG CGCGCAGGCCGTTGAAAAAAAACCACTTTCCATTCCGGGGGAGGGCTGGACGCCGAACGAGGACGACAGCTGGCTGTTCG ACATACGCTCGGGCCGGTATCGGCTTGGCGACGGGGTGCGAGGGTATCAGACGCCGCAGGGGATTTGCGTCGACCTCGGC GATGTCGTGCTCGCACTCGACCTCGCGGTGCGCGTCGACAAGAAGTTGCGCCGCGCAACCGGCTGGGTGTTCGACGAGCG GCGCAGCCTGACAATCGACCGCGAGACGGGCGAGGTGCAGGCGGGGAGCGCGCGGTATCGCCTCGACGCGACGACGATCC GCGACACCGCGGCGGGCTGGTGCGTCGATCTGGACAGCCTGAACCAGTGGCTCGGCGTGCCGCTCGCGGCTGATCTGTCA AACGCGGTGCTGCGCGTCGACAGCAAGGACAAGCTGCCCTTCCAGCTCGCCGCCGAACGCCGCGCACGCGCCGCCGCGAT CCGCCCGCAGGCGAGCTTCGACCTCGCCAGCCTGCCGCAGGCGGCGCGGCCGTACCAGGCGTGGGCAACCCCCGCGGTCG ATGTCGTCGCTTCGGCGGGCGCGGCGTCGGACAAGCGCGGCGGTTCCCATGTGCAGGCGCGCTACGAGATTTTCGCGGCG GGCGAGCTTGCGGGTCAGAGTTTCGACGCGCGGCTGTCGTCGGACAATGAGGGCGTGCCCGACAGCCTGAGGATGCGGCT TTATCGCACCGATCCGCAGGGGCAGCTGCTCGGACCGCTGAAGGCAACGCATTATGGCGTCGGCGACGTGAGCCTGCTCT CGACGGGGATCGTCGCCGCGTCGGCGGCGGGGCGCGGCGCGGTGATGACCAACCGCCCCGTCGAGCGACCCGACGCCTTC GACAAGACCGATTTTCGCGGCGACCTGCCCGCGGGCTGGGACGCCGAGCTGTATCGCAACGGCCAGCTGCTCGCTTTCAC GACGCCGACCGGCGACGGCCGCTACGAGTTTATCGACGTGCCGCTGCAATATGGTGCCAACCGCTTCGAGATCGTGCTCT ATGGCCCGCAGGGGCAGATCCGCCGCGAGATCCGGCAGGTTCAGGTCGGCATGGATTCGATCCCGCCGCAACAGACCTGG TATTGGGCGGGTTTCGCGCAGGAGGACACCGATCTTTTCAGTTTCGCCAACCGGCGGCGCGGAGCATTCCATCGCGGCTG GCGCGGGTCGCTGGGGATCGAGCGCGGGCTCGACACGCGCACGTCGATCGCGGCCCACGCGCACAGCCTGCTGATCGAAA ATGTTCGCCGCAACTATGGCGAGCTAGCGCTGCGCCGCTCGATCGGGGCGACCCTGCTCGAAATCGGCGTGGCGCAGGCT GATGACGGCGGCGGCGCGGCGCGGGCGAGCTGGCTCGCCAACTTTGGCGAAACCTATCTCCGCGCCGACGCGATGCGCGG CTGGGGCGGGTTTGTGTCCGATCGATTCGTTAACAATATCAATGCGATCACATCGCTCTCGCTCGATCAGTCGGTCAAGC TGGGGCGCACGATGCTGCCGCTGCATTTCGACCTGCGCCATGTCGAGCGCCGCTCGGGGTTCGACAGCCTCGAGGCGAGC GCGCGCGCGTCGGCGACCTTCCGCGCGCTGACCTTCACCGGCCAGCTCGACTGGAGCCGGACGAAGGCGCCCGTCGGCCC CGACCCGCCCGACAATCTGACCGCCAGCCTGCTCGCCAACGCGCGCATCGGGCGTGTTCGCGTCAGGGGGGAGGCGCGCC TTGCGCTGGCGGGTGACGGCGGCGATACGCGCCTGGCGCTGATCGGCGAGTGGGCGGCAGGCGCCGATGCCGAATGGCGC GCCGAACTCGGTTATGACCGCGGCCTCGCGCGGGCCCGTGCGGGCCTTGGTTATACACGCCGTTTCGATAAATTGCAGCT GAGCGGCTTTGGCGAAGTCGCGAGCGATGGCTCGGTCGCGGCGTCGCTGTCGCTCGCATTCAGTTTCGGGCCGAAAAGCG GCGGCGGTTGGCGCGTGTCGAGCGAGAAGCTCGCGAGTCGCGGCCAGGTGATCGCCGAGGTGTGGATGGACGAGAATGGC GATGGCGTGCGCCAGGCGCACGAAGCCGCGCTGCCGGGCGTGCCGCTGACCGCCGGCCATGCGCGCGCCGACGCCGCGAC CGACGCCGCTGGGCAGGGGACGATCGACGGACTCGAACCCTTTCGTCCGGTGCTCATCGGCATCGATGCGGGCAGCCTGC CCGACCCCTATGTCCAGCCCGCGCTGCCGGGGGTCGTCGTCACGCCGCGGCCGGGGGTCGCGACGCGCGCTCGGCTGCCG ATGACCGCCGCTGGCGAGATCGAGGGCATCGCGCGCCGCGACGGCGGCAACCCGGTCGAGGGGCTGCTCGTCGAGCTGAT CGACGCCGAAGGCCGCGTGCGCGCGGCGACGGTGACCGAATTCGACGGCTATTTCCTGTTCGAAGGCGTGGCGTACGGGC GTTACAGGCTGCGACCGAGCAAGGCGTCGGCGGCGGCGTTGCGGCTCGACGCCCGGTTTACGATAGATGCGGCGCCGGGC AAGGCGACCCCGCGCGTGCGGCTGGGCACGCTGATGCTGAAACCGGCGCGGCGCGCGATTGTGGCGGGGGATGACGATGA GAAGCGCGATCGCCACCCGCTCAACGCAACAATGTTACCAGCGCGTCCCATTCGCCATCCACCCTCCGCCAGCCCATAA
Upstream 100 bases:
>100_bases ATTCGTTATACCGAGGATCGCGAAATCGGCGGCGGCACGATCGACGAGGCCGAGCGGGTGGTGAAGTGAGCGGATAGGGT AGAGCAGCGCGGACCGGACG
Downstream 100 bases:
>100_bases ACCCGGCGCCCTGTTAACCAGTTTTTATCCATGATTGGCCACAGCGGGGGTGCGCATGAATTTGCCTGTGGGGAACAATC GAATGTCCGAAGCCCTTGGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 932; Mature: 932
Protein sequence:
>932_residues MIRADRCRWLSAVFAALALVGAMLSAGAQAVEKKPLSIPGEGWTPNEDDSWLFDIRSGRYRLGDGVRGYQTPQGICVDLG DVVLALDLAVRVDKKLRRATGWVFDERRSLTIDRETGEVQAGSARYRLDATTIRDTAAGWCVDLDSLNQWLGVPLAADLS NAVLRVDSKDKLPFQLAAERRARAAAIRPQASFDLASLPQAARPYQAWATPAVDVVASAGAASDKRGGSHVQARYEIFAA GELAGQSFDARLSSDNEGVPDSLRMRLYRTDPQGQLLGPLKATHYGVGDVSLLSTGIVAASAAGRGAVMTNRPVERPDAF DKTDFRGDLPAGWDAELYRNGQLLAFTTPTGDGRYEFIDVPLQYGANRFEIVLYGPQGQIRREIRQVQVGMDSIPPQQTW YWAGFAQEDTDLFSFANRRRGAFHRGWRGSLGIERGLDTRTSIAAHAHSLLIENVRRNYGELALRRSIGATLLEIGVAQA DDGGGAARASWLANFGETYLRADAMRGWGGFVSDRFVNNINAITSLSLDQSVKLGRTMLPLHFDLRHVERRSGFDSLEAS ARASATFRALTFTGQLDWSRTKAPVGPDPPDNLTASLLANARIGRVRVRGEARLALAGDGGDTRLALIGEWAAGADAEWR AELGYDRGLARARAGLGYTRRFDKLQLSGFGEVASDGSVAASLSLAFSFGPKSGGGWRVSSEKLASRGQVIAEVWMDENG DGVRQAHEAALPGVPLTAGHARADAATDAAGQGTIDGLEPFRPVLIGIDAGSLPDPYVQPALPGVVVTPRPGVATRARLP MTAAGEIEGIARRDGGNPVEGLLVELIDAEGRVRAATVTEFDGYFLFEGVAYGRYRLRPSKASAAALRLDARFTIDAAPG KATPRVRLGTLMLKPARRAIVAGDDDEKRDRHPLNATMLPARPIRHPPSASP
Sequences:
>Translated_932_residues MIRADRCRWLSAVFAALALVGAMLSAGAQAVEKKPLSIPGEGWTPNEDDSWLFDIRSGRYRLGDGVRGYQTPQGICVDLG DVVLALDLAVRVDKKLRRATGWVFDERRSLTIDRETGEVQAGSARYRLDATTIRDTAAGWCVDLDSLNQWLGVPLAADLS NAVLRVDSKDKLPFQLAAERRARAAAIRPQASFDLASLPQAARPYQAWATPAVDVVASAGAASDKRGGSHVQARYEIFAA GELAGQSFDARLSSDNEGVPDSLRMRLYRTDPQGQLLGPLKATHYGVGDVSLLSTGIVAASAAGRGAVMTNRPVERPDAF DKTDFRGDLPAGWDAELYRNGQLLAFTTPTGDGRYEFIDVPLQYGANRFEIVLYGPQGQIRREIRQVQVGMDSIPPQQTW YWAGFAQEDTDLFSFANRRRGAFHRGWRGSLGIERGLDTRTSIAAHAHSLLIENVRRNYGELALRRSIGATLLEIGVAQA DDGGGAARASWLANFGETYLRADAMRGWGGFVSDRFVNNINAITSLSLDQSVKLGRTMLPLHFDLRHVERRSGFDSLEAS ARASATFRALTFTGQLDWSRTKAPVGPDPPDNLTASLLANARIGRVRVRGEARLALAGDGGDTRLALIGEWAAGADAEWR AELGYDRGLARARAGLGYTRRFDKLQLSGFGEVASDGSVAASLSLAFSFGPKSGGGWRVSSEKLASRGQVIAEVWMDENG DGVRQAHEAALPGVPLTAGHARADAATDAAGQGTIDGLEPFRPVLIGIDAGSLPDPYVQPALPGVVVTPRPGVATRARLP MTAAGEIEGIARRDGGNPVEGLLVELIDAEGRVRAATVTEFDGYFLFEGVAYGRYRLRPSKASAAALRLDARFTIDAAPG KATPRVRLGTLMLKPARRAIVAGDDDEKRDRHPLNATMLPARPIRHPPSASP >Mature_932_residues MIRADRCRWLSAVFAALALVGAMLSAGAQAVEKKPLSIPGEGWTPNEDDSWLFDIRSGRYRLGDGVRGYQTPQGICVDLG DVVLALDLAVRVDKKLRRATGWVFDERRSLTIDRETGEVQAGSARYRLDATTIRDTAAGWCVDLDSLNQWLGVPLAADLS NAVLRVDSKDKLPFQLAAERRARAAAIRPQASFDLASLPQAARPYQAWATPAVDVVASAGAASDKRGGSHVQARYEIFAA GELAGQSFDARLSSDNEGVPDSLRMRLYRTDPQGQLLGPLKATHYGVGDVSLLSTGIVAASAAGRGAVMTNRPVERPDAF DKTDFRGDLPAGWDAELYRNGQLLAFTTPTGDGRYEFIDVPLQYGANRFEIVLYGPQGQIRREIRQVQVGMDSIPPQQTW YWAGFAQEDTDLFSFANRRRGAFHRGWRGSLGIERGLDTRTSIAAHAHSLLIENVRRNYGELALRRSIGATLLEIGVAQA DDGGGAARASWLANFGETYLRADAMRGWGGFVSDRFVNNINAITSLSLDQSVKLGRTMLPLHFDLRHVERRSGFDSLEAS ARASATFRALTFTGQLDWSRTKAPVGPDPPDNLTASLLANARIGRVRVRGEARLALAGDGGDTRLALIGEWAAGADAEWR AELGYDRGLARARAGLGYTRRFDKLQLSGFGEVASDGSVAASLSLAFSFGPKSGGGWRVSSEKLASRGQVIAEVWMDENG DGVRQAHEAALPGVPLTAGHARADAATDAAGQGTIDGLEPFRPVLIGIDAGSLPDPYVQPALPGVVVTPRPGVATRARLP MTAAGEIEGIARRDGGNPVEGLLVELIDAEGRVRAATVTEFDGYFLFEGVAYGRYRLRPSKASAAALRLDARFTIDAAPG KATPRVRLGTLMLKPARRAIVAGDDDEKRDRHPLNATMLPARPIRHPPSASP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 100328; Mature: 100328
Theoretical pI: Translated: 9.04; Mature: 9.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIRADRCRWLSAVFAALALVGAMLSAGAQAVEKKPLSIPGEGWTPNEDDSWLFDIRSGRY CCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCE RLGDGVRGYQTPQGICVDLGDVVLALDLAVRVDKKLRRATGWVFDERRSLTIDRETGEVQ ECCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCEEEECCCCCEE AGSARYRLDATTIRDTAAGWCVDLDSLNQWLGVPLAADLSNAVLRVDSKDKLPFQLAAER CCCCEEEEECHHHHCCCCCEEEEHHHHHHHHCCCHHHCCCCEEEEECCCCCCCHHHHHHH RARAAAIRPQASFDLASLPQAARPYQAWATPAVDVVASAGAASDKRGGSHVQARYEIFAA HHHHHCCCCCCCCCHHHCCCCCCCCHHHCCCHHHHHHCCCCCCCCCCCCCEEEEEEEEEE GELAGQSFDARLSSDNEGVPDSLRMRLYRTDPQGQLLGPLKATHYGVGDVSLLSTGIVAA CHHCCCCCCCEECCCCCCCCHHHEEEEEEECCCCCEECCHHHHHCCCCCHHHHHHHHHEE SAAGRGAVMTNRPVERPDAFDKTDFRGDLPAGWDAELYRNGQLLAFTTPTGDGRYEFIDV CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHEECCEEEEEECCCCCCEEEEEEC PLQYGANRFEIVLYGPQGQIRREIRQVQVGMDSIPPQQTWYWAGFAQEDTDLFSFANRRR CHHHCCCEEEEEEECCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHCC GAFHRGWRGSLGIERGLDTRTSIAAHAHSLLIENVRRNYGELALRRSIGATLLEIGVAQA CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCEEC DDGGGAARASWLANFGETYLRADAMRGWGGFVSDRFVNNINAITSLSLDQSVKLGRTMLP CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHEECCCCCHHHCCCEEEC LHFDLRHVERRSGFDSLEASARASATFRALTFTGQLDWSRTKAPVGPDPPDNLTASLLAN EEHHHHHHHHHCCCCHHHHHHHCCEEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHC ARIGRVRVRGEARLALAGDGGDTRLALIGEWAAGADAEWRAELGYDRGLARARAGLGYTR CCCCEEEEECCEEEEEECCCCCEEEEEEECCCCCCCCCHHHHCCCHHHHHHHHHCCCHHH RFDKLQLSGFGEVASDGSVAASLSLAFSFGPKSGGGWRVSSEKLASRGQVIAEVWMDENG CCCEEEECCCCCCCCCCCEEEEEEEEEEECCCCCCCEEECHHHHHHCCCEEEEEEECCCC DGVRQAHEAALPGVPLTAGHARADAATDAAGQGTIDGLEPFRPVLIGIDAGSLPDPYVQP CHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCC ALPGVVVTPRPGVATRARLPMTAAGEIEGIARRDGGNPVEGLLVELIDAEGRVRAATVTE CCCCEEECCCCCCCCCCCCCCCCCCCCCCHHCCCCCCHHHHHHHHHHCCCCCEEEEEEEE FDGYFLFEGVAYGRYRLRPSKASAAALRLDARFTIDAAPGKATPRVRLGTLMLKPARRAI CCCEEEEECEEECEEEECCCCCCCEEEEEECEEEEECCCCCCCCCEEEEEEEECCCCEEE VAGDDDEKRDRHPLNATMLPARPIRHPPSASP EECCCCCHHCCCCCCEEECCCCCCCCCCCCCC >Mature Secondary Structure MIRADRCRWLSAVFAALALVGAMLSAGAQAVEKKPLSIPGEGWTPNEDDSWLFDIRSGRY CCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCE RLGDGVRGYQTPQGICVDLGDVVLALDLAVRVDKKLRRATGWVFDERRSLTIDRETGEVQ ECCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCEEEECCCCCEE AGSARYRLDATTIRDTAAGWCVDLDSLNQWLGVPLAADLSNAVLRVDSKDKLPFQLAAER CCCCEEEEECHHHHCCCCCEEEEHHHHHHHHCCCHHHCCCCEEEEECCCCCCCHHHHHHH RARAAAIRPQASFDLASLPQAARPYQAWATPAVDVVASAGAASDKRGGSHVQARYEIFAA HHHHHCCCCCCCCCHHHCCCCCCCCHHHCCCHHHHHHCCCCCCCCCCCCCEEEEEEEEEE GELAGQSFDARLSSDNEGVPDSLRMRLYRTDPQGQLLGPLKATHYGVGDVSLLSTGIVAA CHHCCCCCCCEECCCCCCCCHHHEEEEEEECCCCCEECCHHHHHCCCCCHHHHHHHHHEE SAAGRGAVMTNRPVERPDAFDKTDFRGDLPAGWDAELYRNGQLLAFTTPTGDGRYEFIDV CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHEECCEEEEEECCCCCCEEEEEEC PLQYGANRFEIVLYGPQGQIRREIRQVQVGMDSIPPQQTWYWAGFAQEDTDLFSFANRRR CHHHCCCEEEEEEECCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHCC GAFHRGWRGSLGIERGLDTRTSIAAHAHSLLIENVRRNYGELALRRSIGATLLEIGVAQA CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCEEC DDGGGAARASWLANFGETYLRADAMRGWGGFVSDRFVNNINAITSLSLDQSVKLGRTMLP CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHEECCCCCHHHCCCEEEC LHFDLRHVERRSGFDSLEASARASATFRALTFTGQLDWSRTKAPVGPDPPDNLTASLLAN EEHHHHHHHHHCCCCHHHHHHHCCEEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHC ARIGRVRVRGEARLALAGDGGDTRLALIGEWAAGADAEWRAELGYDRGLARARAGLGYTR CCCCEEEEECCEEEEEECCCCCEEEEEEECCCCCCCCCHHHHCCCHHHHHHHHHCCCHHH RFDKLQLSGFGEVASDGSVAASLSLAFSFGPKSGGGWRVSSEKLASRGQVIAEVWMDENG CCCEEEECCCCCCCCCCCEEEEEEEEEEECCCCCCCEEECHHHHHHCCCEEEEEEECCCC DGVRQAHEAALPGVPLTAGHARADAATDAAGQGTIDGLEPFRPVLIGIDAGSLPDPYVQP CHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCC ALPGVVVTPRPGVATRARLPMTAAGEIEGIARRDGGNPVEGLLVELIDAEGRVRAATVTE CCCCEEECCCCCCCCCCCCCCCCCCCCCCHHCCCCCCHHHHHHHHHHCCCCCEEEEEEEE FDGYFLFEGVAYGRYRLRPSKASAAALRLDARFTIDAAPGKATPRVRLGTLMLKPARRAI CCCEEEEECEEECEEEECCCCCCCEEEEEECEEEEECCCCCCCCCEEEEEEEECCCCEEE VAGDDDEKRDRHPLNATMLPARPIRHPPSASP EECCCCCHHCCCCCCEEECCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA