| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is yceF [C]
Identifier: 103488318
GI number: 103488318
Start: 2993535
End: 2994131
Strand: Reverse
Name: yceF [C]
Synonym: Sala_2841
Alternate gene names: 103488318
Gene position: 2994131-2993535 (Counterclockwise)
Preceding gene: 103488319
Following gene: 103488317
Centisome position: 89.51
GC content: 68.51
Gene sequence:
>597_bases ATGACCCTGATCCTTGCCTCGCAAAGCAGCGGCCGCGCCGCGATGCTGCGCGCCGCCGGGCTGGCGTTCGAGACGACCGC TGCGCATGTCGATGAGGAAATGCTCACCGCCTCGCTGCGTGCGGCGGGGCAGACGCCGCGCAACATCGCCGACGCGCTCG CCGAGGCGAAGGCGGTCAAAATCGCGTCGCGGCTTCCGGGCGTCACCGTGATCGGCGCCGATTCCACGCTGGCGCTCGAC GACGGCTCGATGCTCGCAAAACCTGAAACCCCGGAGGAAGCTGCCGACCATCTGCGCCGCATGGCGGGGAGGCGCCACCG GTTGTTCAGCGCGGCGGTCGCCGCCCGCGATGGCGCCCCGATATGGCGCGCGATCGGCGAGGCGAAGCTCTGGATCCGCC CCTTGTCGGATGCCTTCATCGCCGACTATGTGGCGCAAAACTGGGACAGCATCCGCTGGACCGTCGGCTGTTACGAGATC GAGGGAGCGGGCGTGCAATTGTTCGACCGGGTCGAGGGCGACCCCTGGACCATCATCGGCATGCCGATGCTGCCTTTGCT GACATGGCTGCGCGCGACCGGACTGGCGCCGCAATGA
Upstream 100 bases:
>100_bases TGTTTGCCGACAACGGCTGGCCGGTGATCGACGTCACGCGCCGCTCGATCGAGGAAACCGCCGCGGCGGTGATCAAGCTC GTCGAGGACCGCGCCAGCGC
Downstream 100 bases:
>100_bases GCCACCCCTATGCCTCCCCCTTCGCCGAGGTGATCGGAGATCCGATCGCCCAGTCGAAATCGCCGCTGATCCACGGGTTC TGGCTCGACGCGTTGGGTAT
Product: maf protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 198; Mature: 197
Protein sequence:
>198_residues MTLILASQSSGRAAMLRAAGLAFETTAAHVDEEMLTASLRAAGQTPRNIADALAEAKAVKIASRLPGVTVIGADSTLALD DGSMLAKPETPEEAADHLRRMAGRRHRLFSAAVAARDGAPIWRAIGEAKLWIRPLSDAFIADYVAQNWDSIRWTVGCYEI EGAGVQLFDRVEGDPWTIIGMPMLPLLTWLRATGLAPQ
Sequences:
>Translated_198_residues MTLILASQSSGRAAMLRAAGLAFETTAAHVDEEMLTASLRAAGQTPRNIADALAEAKAVKIASRLPGVTVIGADSTLALD DGSMLAKPETPEEAADHLRRMAGRRHRLFSAAVAARDGAPIWRAIGEAKLWIRPLSDAFIADYVAQNWDSIRWTVGCYEI EGAGVQLFDRVEGDPWTIIGMPMLPLLTWLRATGLAPQ >Mature_197_residues TLILASQSSGRAAMLRAAGLAFETTAAHVDEEMLTASLRAAGQTPRNIADALAEAKAVKIASRLPGVTVIGADSTLALDD GSMLAKPETPEEAADHLRRMAGRRHRLFSAAVAARDGAPIWRAIGEAKLWIRPLSDAFIADYVAQNWDSIRWTVGCYEIE GAGVQLFDRVEGDPWTIIGMPMLPLLTWLRATGLAPQ
Specific function: Unknown
COG id: COG0424
COG function: function code D; Nucleotide-binding protein implicated in inhibition of septum formation
Gene ontology:
Cell location: Cytoplasm (Potential)
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the maf family
Homologues:
Organism=Homo sapiens, GI117553627, Length=195, Percent_Identity=30.2564102564103, Blast_Score=68, Evalue=5e-12, Organism=Escherichia coli, GI87081830, Length=197, Percent_Identity=33.502538071066, Blast_Score=94, Evalue=5e-21, Organism=Escherichia coli, GI1789646, Length=189, Percent_Identity=30.6878306878307, Blast_Score=71, Evalue=4e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y2841_SPHAL (Q1GP76)
Other databases:
- EMBL: CP000356 - RefSeq: YP_617879.1 - ProteinModelPortal: Q1GP76 - SMR: Q1GP76 - GeneID: 4080634 - GenomeReviews: CP000356_GR - KEGG: sal:Sala_2841 - NMPDR: fig|317655.9.peg.2706 - HOGENOM: HBG414045 - OMA: LVLGCDQ - BioCyc: SALA317655:SALA_2841-MONOMER - GO: GO:0005737 - HAMAP: MF_00528 - InterPro: IPR003697 - PIRSF: PIRSF006305 - TIGRFAMs: TIGR00172
Pfam domain/function: PF02545 Maf
EC number: NA
Molecular weight: Translated: 21262; Mature: 21130
Theoretical pI: Translated: 5.73; Mature: 5.73
Prosite motif: NA
Important sites: ACT_SITE 32-32
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLILASQSSGRAAMLRAAGLAFETTAAHVDEEMLTASLRAAGQTPRNIADALAEAKAVK CEEEEECCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH IASRLPGVTVIGADSTLALDDGSMLAKPETPEEAADHLRRMAGRRHRLFSAAVAARDGAP HHHHCCCEEEEECCCEEEECCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH IWRAIGEAKLWIRPLSDAFIADYVAQNWDSIRWTVGCYEIEGAGVQLFDRVEGDPWTIIG HHHHHCCCEEEEEECHHHHHHHHHHCCCCCEEEEEEEEEECCCCEEEEECCCCCCEEEEC MPMLPLLTWLRATGLAPQ CCHHHHHHHHHHCCCCCC >Mature Secondary Structure TLILASQSSGRAAMLRAAGLAFETTAAHVDEEMLTASLRAAGQTPRNIADALAEAKAVK EEEEECCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH IASRLPGVTVIGADSTLALDDGSMLAKPETPEEAADHLRRMAGRRHRLFSAAVAARDGAP HHHHCCCEEEEECCCEEEECCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH IWRAIGEAKLWIRPLSDAFIADYVAQNWDSIRWTVGCYEIEGAGVQLFDRVEGDPWTIIG HHHHHCCCEEEEEECHHHHHHHHHHCCCCCEEEEEEEEEECCCCEEEEECCCCCCEEEEC MPMLPLLTWLRATGLAPQ CCHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA