| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103488130
Identifier: 103488130
GI number: 103488130
Start: 2801727
End: 2802506
Strand: Direct
Name: 103488130
Synonym: Sala_2653
Alternate gene names: NA
Gene position: 2801727-2802506 (Clockwise)
Preceding gene: 103488110
Following gene: 103488137
Centisome position: 83.75
GC content: 60.64
Gene sequence:
>780_bases TTGGCCGCTGAGCGCAAGGAGCCCCTGGCTCGAACGACTGTCATCAAGCTCGCCTCCGTTCTCGGACTGGAGGATAATGC GTTTATCGTCGGCGGACAGGCATTGAATCTGTGGGCAGAGCGTTATGCCCTAGGACGCCCCGAGCTGATCGCCTTTGGCC CCTTCACATCCAAGGATCTCGACTATTTCGGTCATCGGCAGGCCGCGAAGAAGCTGGCCGATGCCTTGAACGGAGAAGTC CACTATCCCGGCCCGGACGATCACACGCCAAATTCAGCGGTCGTGACCGCGACCATCGACGGAATCGATCTTGAGATCGA TTTTCTCAGTGACGTCATCGGCGTGAAGGCGAATGCCCTCGAACGTGATGCGGTCGAGTTGATCGTGCCGGTACGAGGAA ACGGGGTCGACGAACTCGTGCTCCCCGTGATGCATCCGCTGCATTGCCTTCAAAGCCGCGTAGCCAATGTCGTGACTCTC GGCCGTCACGATGATGTCGCGATGCGGCAACTCGCAGCGGCGCCGATCGTGCTGCAGGCCTATATCGACGAGATGCTGGC CGAAGGCGACGTGAAAGAAGCAAAGCTGGTTCTCCAGCGGCTCTTCGAGTTCCTGCGGGGCGACATCGCCGCGCGGAAGT GTCCCGAACTGCCGATGCGCAATCCCGCAGAGATATTCGCTGCATTCCAGCGGGACCGCAGGCTTGATCTGCGATTCCGC TGGTTCAACCTGCGCTCGATGCGACGCACGCTCCGATCAAGGCGCCGTCGGCGCGAGTGA
Upstream 100 bases:
>100_bases CTGCGTAATGGCCATGTTTCGCGCGAAGAACTGCGAGCGGCCAATGGTGTTTTTTCTTCGCTCGATATTGCGGCGTCATC CATCCGCCGCCGGCGTCTGA
Downstream 100 bases:
>100_bases TCAATCGCTTGCGCTTCGGGAGGTCGCCGAGGCGCGCTCAGGCGGGCGGGATATAGGCTTCGTAGGGGTTGCCGGGAGCG AGATGACCGAACGGCGTCAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 259; Mature: 258
Protein sequence:
>259_residues MAAERKEPLARTTVIKLASVLGLEDNAFIVGGQALNLWAERYALGRPELIAFGPFTSKDLDYFGHRQAAKKLADALNGEV HYPGPDDHTPNSAVVTATIDGIDLEIDFLSDVIGVKANALERDAVELIVPVRGNGVDELVLPVMHPLHCLQSRVANVVTL GRHDDVAMRQLAAAPIVLQAYIDEMLAEGDVKEAKLVLQRLFEFLRGDIAARKCPELPMRNPAEIFAAFQRDRRLDLRFR WFNLRSMRRTLRSRRRRRE
Sequences:
>Translated_259_residues MAAERKEPLARTTVIKLASVLGLEDNAFIVGGQALNLWAERYALGRPELIAFGPFTSKDLDYFGHRQAAKKLADALNGEV HYPGPDDHTPNSAVVTATIDGIDLEIDFLSDVIGVKANALERDAVELIVPVRGNGVDELVLPVMHPLHCLQSRVANVVTL GRHDDVAMRQLAAAPIVLQAYIDEMLAEGDVKEAKLVLQRLFEFLRGDIAARKCPELPMRNPAEIFAAFQRDRRLDLRFR WFNLRSMRRTLRSRRRRRE >Mature_258_residues AAERKEPLARTTVIKLASVLGLEDNAFIVGGQALNLWAERYALGRPELIAFGPFTSKDLDYFGHRQAAKKLADALNGEVH YPGPDDHTPNSAVVTATIDGIDLEIDFLSDVIGVKANALERDAVELIVPVRGNGVDELVLPVMHPLHCLQSRVANVVTLG RHDDVAMRQLAAAPIVLQAYIDEMLAEGDVKEAKLVLQRLFEFLRGDIAARKCPELPMRNPAEIFAAFQRDRRLDLRFRW FNLRSMRRTLRSRRRRRE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29112; Mature: 28981
Theoretical pI: Translated: 8.25; Mature: 8.25
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAAERKEPLARTTVIKLASVLGLEDNAFIVGGQALNLWAERYALGRPELIAFGPFTSKDL CCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHCCCCCEEEECCCCCCCH DYFGHRQAAKKLADALNGEVHYPGPDDHTPNSAVVTATIDGIDLEIDFLSDVIGVKANAL HHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCEEEEEEECCCEEEHHHHHHHHHCHHHHC ERDAVELIVPVRGNGVDELVLPVMHPLHCLQSRVANVVTLGRHDDVAMRQLAAAPIVLQA CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHCHHHHHH YIDEMLAEGDVKEAKLVLQRLFEFLRGDIAARKCPELPMRNPAEIFAAFQRDRRLDLRFR HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCEEEEE WFNLRSMRRTLRSRRRRRE EHHHHHHHHHHHHHHHCCC >Mature Secondary Structure AAERKEPLARTTVIKLASVLGLEDNAFIVGGQALNLWAERYALGRPELIAFGPFTSKDL CCCCCCCHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHCCCCCEEEECCCCCCCH DYFGHRQAAKKLADALNGEVHYPGPDDHTPNSAVVTATIDGIDLEIDFLSDVIGVKANAL HHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCEEEEEEECCCEEEHHHHHHHHHCHHHHC ERDAVELIVPVRGNGVDELVLPVMHPLHCLQSRVANVVTLGRHDDVAMRQLAAAPIVLQA CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHCHHHHHH YIDEMLAEGDVKEAKLVLQRLFEFLRGDIAARKCPELPMRNPAEIFAAFQRDRRLDLRFR HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCEEEEE WFNLRSMRRTLRSRRRRRE EHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA