Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103488130

Identifier: 103488130

GI number: 103488130

Start: 2801727

End: 2802506

Strand: Direct

Name: 103488130

Synonym: Sala_2653

Alternate gene names: NA

Gene position: 2801727-2802506 (Clockwise)

Preceding gene: 103488110

Following gene: 103488137

Centisome position: 83.75

GC content: 60.64

Gene sequence:

>780_bases
TTGGCCGCTGAGCGCAAGGAGCCCCTGGCTCGAACGACTGTCATCAAGCTCGCCTCCGTTCTCGGACTGGAGGATAATGC
GTTTATCGTCGGCGGACAGGCATTGAATCTGTGGGCAGAGCGTTATGCCCTAGGACGCCCCGAGCTGATCGCCTTTGGCC
CCTTCACATCCAAGGATCTCGACTATTTCGGTCATCGGCAGGCCGCGAAGAAGCTGGCCGATGCCTTGAACGGAGAAGTC
CACTATCCCGGCCCGGACGATCACACGCCAAATTCAGCGGTCGTGACCGCGACCATCGACGGAATCGATCTTGAGATCGA
TTTTCTCAGTGACGTCATCGGCGTGAAGGCGAATGCCCTCGAACGTGATGCGGTCGAGTTGATCGTGCCGGTACGAGGAA
ACGGGGTCGACGAACTCGTGCTCCCCGTGATGCATCCGCTGCATTGCCTTCAAAGCCGCGTAGCCAATGTCGTGACTCTC
GGCCGTCACGATGATGTCGCGATGCGGCAACTCGCAGCGGCGCCGATCGTGCTGCAGGCCTATATCGACGAGATGCTGGC
CGAAGGCGACGTGAAAGAAGCAAAGCTGGTTCTCCAGCGGCTCTTCGAGTTCCTGCGGGGCGACATCGCCGCGCGGAAGT
GTCCCGAACTGCCGATGCGCAATCCCGCAGAGATATTCGCTGCATTCCAGCGGGACCGCAGGCTTGATCTGCGATTCCGC
TGGTTCAACCTGCGCTCGATGCGACGCACGCTCCGATCAAGGCGCCGTCGGCGCGAGTGA

Upstream 100 bases:

>100_bases
CTGCGTAATGGCCATGTTTCGCGCGAAGAACTGCGAGCGGCCAATGGTGTTTTTTCTTCGCTCGATATTGCGGCGTCATC
CATCCGCCGCCGGCGTCTGA

Downstream 100 bases:

>100_bases
TCAATCGCTTGCGCTTCGGGAGGTCGCCGAGGCGCGCTCAGGCGGGCGGGATATAGGCTTCGTAGGGGTTGCCGGGAGCG
AGATGACCGAACGGCGTCAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 258

Protein sequence:

>259_residues
MAAERKEPLARTTVIKLASVLGLEDNAFIVGGQALNLWAERYALGRPELIAFGPFTSKDLDYFGHRQAAKKLADALNGEV
HYPGPDDHTPNSAVVTATIDGIDLEIDFLSDVIGVKANALERDAVELIVPVRGNGVDELVLPVMHPLHCLQSRVANVVTL
GRHDDVAMRQLAAAPIVLQAYIDEMLAEGDVKEAKLVLQRLFEFLRGDIAARKCPELPMRNPAEIFAAFQRDRRLDLRFR
WFNLRSMRRTLRSRRRRRE

Sequences:

>Translated_259_residues
MAAERKEPLARTTVIKLASVLGLEDNAFIVGGQALNLWAERYALGRPELIAFGPFTSKDLDYFGHRQAAKKLADALNGEV
HYPGPDDHTPNSAVVTATIDGIDLEIDFLSDVIGVKANALERDAVELIVPVRGNGVDELVLPVMHPLHCLQSRVANVVTL
GRHDDVAMRQLAAAPIVLQAYIDEMLAEGDVKEAKLVLQRLFEFLRGDIAARKCPELPMRNPAEIFAAFQRDRRLDLRFR
WFNLRSMRRTLRSRRRRRE
>Mature_258_residues
AAERKEPLARTTVIKLASVLGLEDNAFIVGGQALNLWAERYALGRPELIAFGPFTSKDLDYFGHRQAAKKLADALNGEVH
YPGPDDHTPNSAVVTATIDGIDLEIDFLSDVIGVKANALERDAVELIVPVRGNGVDELVLPVMHPLHCLQSRVANVVTLG
RHDDVAMRQLAAAPIVLQAYIDEMLAEGDVKEAKLVLQRLFEFLRGDIAARKCPELPMRNPAEIFAAFQRDRRLDLRFRW
FNLRSMRRTLRSRRRRRE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29112; Mature: 28981

Theoretical pI: Translated: 8.25; Mature: 8.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAERKEPLARTTVIKLASVLGLEDNAFIVGGQALNLWAERYALGRPELIAFGPFTSKDL
CCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHCCCCCEEEECCCCCCCH
DYFGHRQAAKKLADALNGEVHYPGPDDHTPNSAVVTATIDGIDLEIDFLSDVIGVKANAL
HHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCEEEEEEECCCEEEHHHHHHHHHCHHHHC
ERDAVELIVPVRGNGVDELVLPVMHPLHCLQSRVANVVTLGRHDDVAMRQLAAAPIVLQA
CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHCHHHHHH
YIDEMLAEGDVKEAKLVLQRLFEFLRGDIAARKCPELPMRNPAEIFAAFQRDRRLDLRFR
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCEEEEE
WFNLRSMRRTLRSRRRRRE
EHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AAERKEPLARTTVIKLASVLGLEDNAFIVGGQALNLWAERYALGRPELIAFGPFTSKDL
CCCCCCCHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHCCCCCEEEECCCCCCCH
DYFGHRQAAKKLADALNGEVHYPGPDDHTPNSAVVTATIDGIDLEIDFLSDVIGVKANAL
HHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCEEEEEEECCCEEEHHHHHHHHHCHHHHC
ERDAVELIVPVRGNGVDELVLPVMHPLHCLQSRVANVVTLGRHDDVAMRQLAAAPIVLQA
CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHCHHHHHH
YIDEMLAEGDVKEAKLVLQRLFEFLRGDIAARKCPELPMRNPAEIFAAFQRDRRLDLRFR
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCEEEEE
WFNLRSMRRTLRSRRRRRE
EHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA