| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103488024
Identifier: 103488024
GI number: 103488024
Start: 2685117
End: 2685479
Strand: Direct
Name: 103488024
Synonym: Sala_2546
Alternate gene names: NA
Gene position: 2685117-2685479 (Clockwise)
Preceding gene: 103488023
Following gene: 103488025
Centisome position: 80.27
GC content: 61.71
Gene sequence:
>363_bases GTGAATCGTGTGCTTCAACTCCTTCTCCTGTTGGGAGCTGTGCTGGGCCTCTTCAGTCAGCAAGCTGCTTTTGCGGCGGG AACGCACATGACGGCGGCGCCCGCGGCGGTTTCCCAAATGAGCGCCGACTGCATGGAAATGATGGAGAAACAGCAGCCCG AGCCCGCGCAGAAACCCTGCAAGGGACTGACGCTCGACTGCATCGCTGCAATGGGCTGCGTTGTTCCCATCGTGCTCAAG GAGCCGGCGGCGCCTGTCTCAGCGCCCGAGCTTGTTTCCGCACTGGCCTTCTGGCCGGCGACGACGGTCCTGATTGGCAA CAACCATCCACCTGAGCAACACCCACCCACTATCCTTGGCTGA
Upstream 100 bases:
>100_bases ATGTTGTTGCATTCGGCTCCAGCGGGCAGAAGATCTTCGCTCGTTATGGCGGCCAGTGAAATTGTTGCGATGCTGCAAAG GATCGATTAGGTTCGAGGCT
Downstream 100 bases:
>100_bases TTATTGCCGGCCGTAACGGCGGTTGATCGCATTTGCCTCTGTGCATGTGCATCGCATGTCGCCCGCACGGCTATCTCGAT GATTTAGCCAAAGGATATTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 120; Mature: 120
Protein sequence:
>120_residues MNRVLQLLLLLGAVLGLFSQQAAFAAGTHMTAAPAAVSQMSADCMEMMEKQQPEPAQKPCKGLTLDCIAAMGCVVPIVLK EPAAPVSAPELVSALAFWPATTVLIGNNHPPEQHPPTILG
Sequences:
>Translated_120_residues MNRVLQLLLLLGAVLGLFSQQAAFAAGTHMTAAPAAVSQMSADCMEMMEKQQPEPAQKPCKGLTLDCIAAMGCVVPIVLK EPAAPVSAPELVSALAFWPATTVLIGNNHPPEQHPPTILG >Mature_120_residues MNRVLQLLLLLGAVLGLFSQQAAFAAGTHMTAAPAAVSQMSADCMEMMEKQQPEPAQKPCKGLTLDCIAAMGCVVPIVLK EPAAPVSAPELVSALAFWPATTVLIGNNHPPEQHPPTILG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 12526; Mature: 12526
Theoretical pI: Translated: 5.51; Mature: 5.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.3 %Cys (Translated Protein) 5.8 %Met (Translated Protein) 9.2 %Cys+Met (Translated Protein) 3.3 %Cys (Mature Protein) 5.8 %Met (Mature Protein) 9.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNRVLQLLLLLGAVLGLFSQQAAFAAGTHMTAAPAAVSQMSADCMEMMEKQQPEPAQKPC CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHCC KGLTLDCIAAMGCVVPIVLKEPAAPVSAPELVSALAFWPATTVLIGNNHPPEQHPPTILG CCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCC >Mature Secondary Structure MNRVLQLLLLLGAVLGLFSQQAAFAAGTHMTAAPAAVSQMSADCMEMMEKQQPEPAQKPC CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHCC KGLTLDCIAAMGCVVPIVLKEPAAPVSAPELVSALAFWPATTVLIGNNHPPEQHPPTILG CCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA