Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103488023

Identifier: 103488023

GI number: 103488023

Start: 2684575

End: 2685075

Strand: Direct

Name: 103488023

Synonym: Sala_2545

Alternate gene names: NA

Gene position: 2684575-2685075 (Clockwise)

Preceding gene: 103488014

Following gene: 103488024

Centisome position: 80.25

GC content: 62.08

Gene sequence:

>501_bases
TTGCAGGCGAGGCGTAACAGGCAACTTGGGTCTGTTAGGCATGGGAGTGACGAAATGAGATCCGCATCGCTGCTTGCCAC
TTTTCTCGCGCTGGGAATGCCGTCACTCGCGAGTGCTGCGGAGATCGTCGTACATCGTGATCCCGGCTGCGGCTGCTGCG
AACAGTGGGCCGCACAGGTCCGCCAGCAGTTTGGACGACGTGTCACTATCGTCGATGATCAGAGGCGCACAGCGTTCCGC
GAGGCCCAAGGTGTGCCGCCACATCTGGTCTCATGCCATACCGCGATCGTCGATGGCATGGTCTTCGAGGGACATGTGCC
GATTTCCGACATGAAGCGCGCGCTAGCGCAGCGCTCGCGGGGCGTGAAGGGACTTGCGGTCGCGGGGATGCCCATCGGTG
CGCCCGGCATGGAAGTTCCCGGGCAGCGCGCGCAATCCTTCAATGTTGTTGCATTCGGCTCCAGCGGGCAGAAGATCTTC
GCTCGTTATGGCGGCCAGTGA

Upstream 100 bases:

>100_bases
CGACAATGGAGGCGAGCGTTCCCGGCCATGCTACTAAGGTCAGGATCGCGACGATTTTTTAAGGGACTGACTCCAATCCT
GCGTATCTTGAACTGAGCCC

Downstream 100 bases:

>100_bases
AATTGTTGCGATGCTGCAAAGGATCGATTAGGTTCGAGGCTGTGAATCGTGTGCTTCAACTCCTTCTCCTGTTGGGAGCT
GTGCTGGGCCTCTTCAGTCA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 166; Mature: 166

Protein sequence:

>166_residues
MQARRNRQLGSVRHGSDEMRSASLLATFLALGMPSLASAAEIVVHRDPGCGCCEQWAAQVRQQFGRRVTIVDDQRRTAFR
EAQGVPPHLVSCHTAIVDGMVFEGHVPISDMKRALAQRSRGVKGLAVAGMPIGAPGMEVPGQRAQSFNVVAFGSSGQKIF
ARYGGQ

Sequences:

>Translated_166_residues
MQARRNRQLGSVRHGSDEMRSASLLATFLALGMPSLASAAEIVVHRDPGCGCCEQWAAQVRQQFGRRVTIVDDQRRTAFR
EAQGVPPHLVSCHTAIVDGMVFEGHVPISDMKRALAQRSRGVKGLAVAGMPIGAPGMEVPGQRAQSFNVVAFGSSGQKIF
ARYGGQ
>Mature_166_residues
MQARRNRQLGSVRHGSDEMRSASLLATFLALGMPSLASAAEIVVHRDPGCGCCEQWAAQVRQQFGRRVTIVDDQRRTAFR
EAQGVPPHLVSCHTAIVDGMVFEGHVPISDMKRALAQRSRGVKGLAVAGMPIGAPGMEVPGQRAQSFNVVAFGSSGQKIF
ARYGGQ

Specific function: Unknown

COG id: COG3019

COG function: function code R; Predicted metal-binding protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17829; Mature: 17829

Theoretical pI: Translated: 10.92; Mature: 10.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
6.6 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
6.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQARRNRQLGSVRHGSDEMRSASLLATFLALGMPSLASAAEIVVHRDPGCGCCEQWAAQV
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHEEEEECCCCCCHHHHHHHHH
RQQFGRRVTIVDDQRRTAFREAQGVPPHLVSCHTAIVDGMVFEGHVPISDMKRALAQRSR
HHHHCCEEEEEECHHHHHHHHHCCCCHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHC
GVKGLAVAGMPIGAPGMEVPGQRAQSFNVVAFGSSGQKIFARYGGQ
CCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCEEHHCCCCC
>Mature Secondary Structure
MQARRNRQLGSVRHGSDEMRSASLLATFLALGMPSLASAAEIVVHRDPGCGCCEQWAAQV
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHEEEEECCCCCCHHHHHHHHH
RQQFGRRVTIVDDQRRTAFREAQGVPPHLVSCHTAIVDGMVFEGHVPISDMKRALAQRSR
HHHHCCEEEEEECHHHHHHHHHCCCCHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHC
GVKGLAVAGMPIGAPGMEVPGQRAQSFNVVAFGSSGQKIFARYGGQ
CCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCEEHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA