| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103488023
Identifier: 103488023
GI number: 103488023
Start: 2684575
End: 2685075
Strand: Direct
Name: 103488023
Synonym: Sala_2545
Alternate gene names: NA
Gene position: 2684575-2685075 (Clockwise)
Preceding gene: 103488014
Following gene: 103488024
Centisome position: 80.25
GC content: 62.08
Gene sequence:
>501_bases TTGCAGGCGAGGCGTAACAGGCAACTTGGGTCTGTTAGGCATGGGAGTGACGAAATGAGATCCGCATCGCTGCTTGCCAC TTTTCTCGCGCTGGGAATGCCGTCACTCGCGAGTGCTGCGGAGATCGTCGTACATCGTGATCCCGGCTGCGGCTGCTGCG AACAGTGGGCCGCACAGGTCCGCCAGCAGTTTGGACGACGTGTCACTATCGTCGATGATCAGAGGCGCACAGCGTTCCGC GAGGCCCAAGGTGTGCCGCCACATCTGGTCTCATGCCATACCGCGATCGTCGATGGCATGGTCTTCGAGGGACATGTGCC GATTTCCGACATGAAGCGCGCGCTAGCGCAGCGCTCGCGGGGCGTGAAGGGACTTGCGGTCGCGGGGATGCCCATCGGTG CGCCCGGCATGGAAGTTCCCGGGCAGCGCGCGCAATCCTTCAATGTTGTTGCATTCGGCTCCAGCGGGCAGAAGATCTTC GCTCGTTATGGCGGCCAGTGA
Upstream 100 bases:
>100_bases CGACAATGGAGGCGAGCGTTCCCGGCCATGCTACTAAGGTCAGGATCGCGACGATTTTTTAAGGGACTGACTCCAATCCT GCGTATCTTGAACTGAGCCC
Downstream 100 bases:
>100_bases AATTGTTGCGATGCTGCAAAGGATCGATTAGGTTCGAGGCTGTGAATCGTGTGCTTCAACTCCTTCTCCTGTTGGGAGCT GTGCTGGGCCTCTTCAGTCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 166; Mature: 166
Protein sequence:
>166_residues MQARRNRQLGSVRHGSDEMRSASLLATFLALGMPSLASAAEIVVHRDPGCGCCEQWAAQVRQQFGRRVTIVDDQRRTAFR EAQGVPPHLVSCHTAIVDGMVFEGHVPISDMKRALAQRSRGVKGLAVAGMPIGAPGMEVPGQRAQSFNVVAFGSSGQKIF ARYGGQ
Sequences:
>Translated_166_residues MQARRNRQLGSVRHGSDEMRSASLLATFLALGMPSLASAAEIVVHRDPGCGCCEQWAAQVRQQFGRRVTIVDDQRRTAFR EAQGVPPHLVSCHTAIVDGMVFEGHVPISDMKRALAQRSRGVKGLAVAGMPIGAPGMEVPGQRAQSFNVVAFGSSGQKIF ARYGGQ >Mature_166_residues MQARRNRQLGSVRHGSDEMRSASLLATFLALGMPSLASAAEIVVHRDPGCGCCEQWAAQVRQQFGRRVTIVDDQRRTAFR EAQGVPPHLVSCHTAIVDGMVFEGHVPISDMKRALAQRSRGVKGLAVAGMPIGAPGMEVPGQRAQSFNVVAFGSSGQKIF ARYGGQ
Specific function: Unknown
COG id: COG3019
COG function: function code R; Predicted metal-binding protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17829; Mature: 17829
Theoretical pI: Translated: 10.92; Mature: 10.92
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 4.2 %Met (Translated Protein) 6.6 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 4.2 %Met (Mature Protein) 6.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQARRNRQLGSVRHGSDEMRSASLLATFLALGMPSLASAAEIVVHRDPGCGCCEQWAAQV CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHEEEEECCCCCCHHHHHHHHH RQQFGRRVTIVDDQRRTAFREAQGVPPHLVSCHTAIVDGMVFEGHVPISDMKRALAQRSR HHHHCCEEEEEECHHHHHHHHHCCCCHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHC GVKGLAVAGMPIGAPGMEVPGQRAQSFNVVAFGSSGQKIFARYGGQ CCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCEEHHCCCCC >Mature Secondary Structure MQARRNRQLGSVRHGSDEMRSASLLATFLALGMPSLASAAEIVVHRDPGCGCCEQWAAQV CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHEEEEECCCCCCHHHHHHHHH RQQFGRRVTIVDDQRRTAFREAQGVPPHLVSCHTAIVDGMVFEGHVPISDMKRALAQRSR HHHHCCEEEEEECHHHHHHHHHCCCCHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHC GVKGLAVAGMPIGAPGMEVPGQRAQSFNVVAFGSSGQKIFARYGGQ CCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCEEHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA