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The map label for this gene is traF [H]

Identifier: 103487972

GI number: 103487972

Start: 2633773

End: 2634363

Strand: Reverse

Name: traF [H]

Synonym: Sala_2493

Alternate gene names: 103487972

Gene position: 2634363-2633773 (Counterclockwise)

Preceding gene: 103487973

Following gene: 103487971

Centisome position: 78.75

GC content: 69.04

Gene sequence:

>591_bases
ATGAACCGCCGGTTCTTGTGCGCGACGGTCGGCGCAGCGGCGCTGTTTACCGCTTCTTTCGTCGCAGTCGCCTGGCTGAA
GCCGGCGCCGCGACTGCTCTGGAATGCGAGCGCCAGCGCCCCCATCGGCGTGTACCGGATCGATGTCGGTGCGCGGCCTC
GGCTCGGCGAGCTTGTCGCCATCGACCCGCCGCCGGCGCTTGCGATCTATCTTTCCCGTCGCGGCTATCTGCCGCGCGGC
GTTCCGCTGCTGAAGCGCGTCGCCGCGCTTCCGGGCTCTCTGGTCTGCCGTTCGGGTGCATCCGTCACGATCGACGGCGC
GGGCGTCGCCCGTGCGCTGGCGCGCGACGGGGCGGATCGTCCGCTCCCGGTCTGGCGCGGTTGCCGGATCGTCGGGGCGC
AGGAATTATTCCTGATCAATGCCGCGCGGGGCAGCCTCGACGGGCGATATTTCGGGCCGATTTCGGCGTCCGGACTCATC
GGCACGGCGCACCCTGTTCTGACGCGCACCGACGCCGAAGCATCGCTTCGCTGGCACCGCGCGAGCCCTTCCTTCGAACC
AATTGCCGACGAGATGGAGCAAGGACGATGA

Upstream 100 bases:

>100_bases
ATTGGCGCCATGTCGGCAACCGGCTCGCCGCCGGCCTGCCTTTCCGGCCCTATAGTCTCGATCGCCATACGGCATGGCTC
CGCCGCCGGGCGATCGAGGC

Downstream 100 bases:

>100_bases
CAGTTGTGCGGCTGCGGCGAAGTCTCACCATACTGTCTGTCCTGTGCTCGCCGATGCGCGTCGGCGCACGGCGCGCGGCC
ATTTCGGCTGCGCTGCTTTT

Product: conjugal transfer protein traF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 196; Mature: 196

Protein sequence:

>196_residues
MNRRFLCATVGAAALFTASFVAVAWLKPAPRLLWNASASAPIGVYRIDVGARPRLGELVAIDPPPALAIYLSRRGYLPRG
VPLLKRVAALPGSLVCRSGASVTIDGAGVARALARDGADRPLPVWRGCRIVGAQELFLINAARGSLDGRYFGPISASGLI
GTAHPVLTRTDAEASLRWHRASPSFEPIADEMEQGR

Sequences:

>Translated_196_residues
MNRRFLCATVGAAALFTASFVAVAWLKPAPRLLWNASASAPIGVYRIDVGARPRLGELVAIDPPPALAIYLSRRGYLPRG
VPLLKRVAALPGSLVCRSGASVTIDGAGVARALARDGADRPLPVWRGCRIVGAQELFLINAARGSLDGRYFGPISASGLI
GTAHPVLTRTDAEASLRWHRASPSFEPIADEMEQGR
>Mature_196_residues
MNRRFLCATVGAAALFTASFVAVAWLKPAPRLLWNASASAPIGVYRIDVGARPRLGELVAIDPPPALAIYLSRRGYLPRG
VPLLKRVAALPGSLVCRSGASVTIDGAGVARALARDGADRPLPVWRGCRIVGAQELFLINAARGSLDGRYFGPISASGLI
GTAHPVLTRTDAEASLRWHRASPSFEPIADEMEQGR

Specific function: Involved in conjugal transfer of the plasmid (Potential) [H]

COG id: COG4959

COG function: function code OU; Type IV secretory pathway, protease TraF

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S26C family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015927
- InterPro:   IPR011056
- InterPro:   IPR019533
- InterPro:   IPR014139 [H]

Pfam domain/function: PF10502 Peptidase_S26 [H]

EC number: NA

Molecular weight: Translated: 20791; Mature: 20791

Theoretical pI: Translated: 11.15; Mature: 11.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRRFLCATVGAAALFTASFVAVAWLKPAPRLLWNASASAPIGVYRIDVGARPRLGELVA
CCCEEEEHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEEEEECCCCCCCCCCEEE
IDPPPALAIYLSRRGYLPRGVPLLKRVAALPGSLVCRSGASVTIDGAGVARALARDGADR
ECCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCEEECCCCEEEEECHHHHHHHHHCCCCC
PLPVWRGCRIVGAQELFLINAARGSLDGRYFGPISASGLIGTAHPVLTRTDAEASLRWHR
CCCCCCCEEEECCCEEEEEEECCCCCCCEEECCCCCCCCEECCCCEEEECCCHHEEEEEC
ASPSFEPIADEMEQGR
CCCCCCHHHHHHHCCC
>Mature Secondary Structure
MNRRFLCATVGAAALFTASFVAVAWLKPAPRLLWNASASAPIGVYRIDVGARPRLGELVA
CCCEEEEHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEEEEECCCCCCCCCCEEE
IDPPPALAIYLSRRGYLPRGVPLLKRVAALPGSLVCRSGASVTIDGAGVARALARDGADR
ECCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCEEECCCCEEEEECHHHHHHHHHCCCCC
PLPVWRGCRIVGAQELFLINAARGSLDGRYFGPISASGLIGTAHPVLTRTDAEASLRWHR
CCCCCCCEEEECCCEEEEEEECCCCCCCEEECCCCCCCCEECCCCEEEECCCHHEEEEEC
ASPSFEPIADEMEQGR
CCCCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]