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The map label for this gene is trbF [H]

Identifier: 103487958

GI number: 103487958

Start: 2618021

End: 2618704

Strand: Reverse

Name: trbF [H]

Synonym: Sala_2479

Alternate gene names: 103487958

Gene position: 2618704-2618021 (Counterclockwise)

Preceding gene: 103487959

Following gene: 103487957

Centisome position: 78.28

GC content: 66.37

Gene sequence:

>684_bases
ATGTTCAAGAGACCGACCAACCATTATGGCCGCGCCCCCGAGCCGGTCACCCCCTATCAGCGCGCCGCGCAGGTCTGGGA
CGACCGTATCGGCTCGGCGCGCGTCCAGGCGAAGAACTGGCGGCTCGCCTTCTTCGGCTCGCTCCTCCTTTCGGGCGGTC
TTGCGGGGGGCCTCATCTGGCACTCGGCGCGCGGCACCATCACCCCTTGGGTGGTCGAGGTCGACAAGCTCGGCGAGGCC
CGTGCAGTCGCGCCGGCGGACGAGGATTATCAGCCGACCGATCCGCAGACGGCGTTCCATCTCGCGCGGTTCATCGAGCA
TGTGCGTTCGGTCCCGGCCGACCCGGTGGTGCTGCGCAAGGACTGGCTCCGCGCCTATGATTTCACGACCGCGGCAGGGG
CTCAGGCGCTCAACGATCATGCCCGCAACAACGACCCCTTTTCCGAGGTCGGCAAGGTCCAGGTCGCGGTCGACGTCTCG
AGCGTGATCCGCGCCTCGAAGGACAGCTTCCGCATCGCCTGGACCGAGCGTCGCTATCAGGACGGCAGCCTGATCGAGAC
GTCGCGCTGGTCGGCCATTCTTACCGTCACCCATGTGCCGCCGCGCACTCCCGATGCCCTCCGCCGCAATCCGCTTGGAG
TGTTTGTTTCCGCTATTTCCTGGTCGAAGGAGCTCAGCCAATGA

Upstream 100 bases:

>100_bases
GGTGACGCAGGGCGCCACCATCGGTGCCCAGACCCTGAAGGGTGGCGACAGCCACGGCGGCGGTTCGGCTCCCGACATCA
GCGAAAAGGACTGACCGATC

Downstream 100 bases:

>100_bases
AGGCCTTTTCCCGTATCTCGCTGCTCGCGGGTGTCGCTGCGCTCGGCGTGGCGTCGCCATCCCTCGGGGCTGAAGGTCGC
GATCCGAAACAGAATGTCGG

Product: conjugal transfer protein TrbF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 227; Mature: 227

Protein sequence:

>227_residues
MFKRPTNHYGRAPEPVTPYQRAAQVWDDRIGSARVQAKNWRLAFFGSLLLSGGLAGGLIWHSARGTITPWVVEVDKLGEA
RAVAPADEDYQPTDPQTAFHLARFIEHVRSVPADPVVLRKDWLRAYDFTTAAGAQALNDHARNNDPFSEVGKVQVAVDVS
SVIRASKDSFRIAWTERRYQDGSLIETSRWSAILTVTHVPPRTPDALRRNPLGVFVSAISWSKELSQ

Sequences:

>Translated_227_residues
MFKRPTNHYGRAPEPVTPYQRAAQVWDDRIGSARVQAKNWRLAFFGSLLLSGGLAGGLIWHSARGTITPWVVEVDKLGEA
RAVAPADEDYQPTDPQTAFHLARFIEHVRSVPADPVVLRKDWLRAYDFTTAAGAQALNDHARNNDPFSEVGKVQVAVDVS
SVIRASKDSFRIAWTERRYQDGSLIETSRWSAILTVTHVPPRTPDALRRNPLGVFVSAISWSKELSQ
>Mature_227_residues
MFKRPTNHYGRAPEPVTPYQRAAQVWDDRIGSARVQAKNWRLAFFGSLLLSGGLAGGLIWHSARGTITPWVVEVDKLGEA
RAVAPADEDYQPTDPQTAFHLARFIEHVRSVPADPVVLRKDWLRAYDFTTAAGAQALNDHARNNDPFSEVGKVQVAVDVS
SVIRASKDSFRIAWTERRYQDGSLIETSRWSAILTVTHVPPRTPDALRRNPLGVFVSAISWSKELSQ

Specific function: Unknown

COG id: COG3701

COG function: function code U; Type IV secretory pathway, TrbF components

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the trbF family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007430 [H]

Pfam domain/function: PF04335 VirB8 [H]

EC number: NA

Molecular weight: Translated: 25329; Mature: 25329

Theoretical pI: Translated: 9.96; Mature: 9.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
0.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFKRPTNHYGRAPEPVTPYQRAAQVWDDRIGSARVQAKNWRLAFFGSLLLSGGLAGGLIW
CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHCCCCCHHEE
HSARGTITPWVVEVDKLGEARAVAPADEDYQPTDPQTAFHLARFIEHVRSVPADPVVLRK
ECCCCCCCCEEEEHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEHHH
DWLRAYDFTTAAGAQALNDHARNNDPFSEVGKVQVAVDVSSVIRASKDSFRIAWTERRYQ
HHHHHHCCCHHHHHHHHHHHCCCCCCHHHHCCEEEEEEHHHHHHCCCCCEEEEEECCCCC
DGSLIETSRWSAILTVTHVPPRTPDALRRNPLGVFVSAISWSKELSQ
CCCEEECCCCEEEEEEECCCCCCHHHHHCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MFKRPTNHYGRAPEPVTPYQRAAQVWDDRIGSARVQAKNWRLAFFGSLLLSGGLAGGLIW
CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHCCCCCHHEE
HSARGTITPWVVEVDKLGEARAVAPADEDYQPTDPQTAFHLARFIEHVRSVPADPVVLRK
ECCCCCCCCEEEEHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEHHH
DWLRAYDFTTAAGAQALNDHARNNDPFSEVGKVQVAVDVSSVIRASKDSFRIAWTERRYQ
HHHHHHCCCHHHHHHHHHHHCCCCCCHHHHCCEEEEEEHHHHHHCCCCCEEEEEECCCCC
DGSLIETSRWSAILTVTHVPPRTPDALRRNPLGVFVSAISWSKELSQ
CCCEEECCCCEEEEEEECCCCCCHHHHHCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8763954 [H]