Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

Click here to switch to the map view.

The map label for this gene is 103487887

Identifier: 103487887

GI number: 103487887

Start: 2541134

End: 2542459

Strand: Direct

Name: 103487887

Synonym: Sala_2407

Alternate gene names: NA

Gene position: 2541134-2542459 (Clockwise)

Preceding gene: 103487886

Following gene: 103487888

Centisome position: 75.96

GC content: 65.08

Gene sequence:

>1326_bases
TTGAGGCTGTATCTTGCCGCGACTTTACTCGCCCTGCCCGCACCCGCTCTCGCCGAAGATGGCCTGACCATCACGGGCAG
CATGCGCCTGCGCTATGAAATGATCCAAGGACAGGCGCGGACGGGATTCGACGAGAAGGACGACCTGCTCAATGTCCGCA
CGATCGTCGGCGGCGAATATCGCAGCGACGGATTTCGCTTGGGCGCCGAACTCTACGACAGCCGCGTCTATGGGAGCGAG
GCGGGAACCCCGGTGACGACGGGCGAAGTCAACGCGTTCGAACTGGTCCAGGCCTATGTCGGCTATGAGGCGCGCGATGC
CTTCGGTGCAGGCACGAAGCTCGATCTCCAGGCCGGCCGCTTCACGCTGAACCTGGGATCGCGGCGGCTGGTGGCCGCGG
ACGATTATCGCAATACGACCAGCGGCTATACGGGTCTCCGCGCCGACCTGGCGCTGCGCGGAGGTGTCGCGGCGACCTTT
ATCTATACGCTTCCGCAGGTGCGGCTGCCCGACGACCGCGCGTCGCTCGACGCCAACCGGGTCAAGTTCGACAAGGAGAG
CTTTGACCTGCAACTCTGGGGCGGCCTCGCGACGAAGAAGCTCGGCGGGTCGCGCGGCTCGGTCGAGATTTCCTACTTCC
ATCTCGGCGAGCGCGACGCGCCGCAGCGGCCGACGCGCGACCGTTCGCTCGAAACGATCGGACTGCGCGCCTATCGCGAT
CCCGCGCCGGGCCGGTTCGATTATGAGAGCGAGACTTTCTACCAGTTCGGTACGATCAGCAGCAGCCTCGCTCCCTCGGC
AGCCAAGTCCGATGTGTCGGCGTGGTTCACGCATCTCGAGGCGGGTTACAGCTTCCGCCACCCTTGGTCGCCGCGCCTAT
CGCTCGAATTCGACTATGCGAGCGGCGACGGCCGGGGAGGCGATTTCGGCCGCTTCGATACCTTGTTCGGCATGCGCCGC
GCGGAACTCGCGCCAGCGGGCCTCTATAATGCGGTCGGACGGGCCAATCTTCTGTCCCCGGCGATCCGTATCGAAACAAT
ACCGTCAAGGCGCCTCGATGCCTTTGCGGCCTACCGGCCGCTCTGGCTGGCCTCGCGGTTCGACAGTTTTTCGACGACCG
GCGTTCGCGATCCATCCGGCGCCTCCGGCCGCTTCGCGGGACACCAGGTCGAAGCGCGCCTGCGCTACTGGCTCGTACCG
AAGCGCCTCCGCCTCGAATGGAGCGGCCTGTTTCTCGGCAAGGGCCGGTTTCTCCGAAACGCGCCCAATGCACCGGCCGG
GGGCAACACGCTGTATAATTCCTTCAATGCCACCATCAGCTTCTGA

Upstream 100 bases:

>100_bases
TCTAGAGGCGGATTACCGGGGCCGCGCAACCTCCCGGTAAAGCGTCCCGGCGCTCAAGCGTTGCCTGTTCGTCCTCGATT
TCGGGGATCAGGAGGTTTGC

Downstream 100 bases:

>100_bases
AACCGGCGCAGGTCGCAAACAGCATGCTTGGCTTCTGCGAGCAGCAACCTGTATAGACGGGTTATGGATGTTACCACTCG
CACCCCCGGACGCGGATCAA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 441; Mature: 441

Protein sequence:

>441_residues
MRLYLAATLLALPAPALAEDGLTITGSMRLRYEMIQGQARTGFDEKDDLLNVRTIVGGEYRSDGFRLGAELYDSRVYGSE
AGTPVTTGEVNAFELVQAYVGYEARDAFGAGTKLDLQAGRFTLNLGSRRLVAADDYRNTTSGYTGLRADLALRGGVAATF
IYTLPQVRLPDDRASLDANRVKFDKESFDLQLWGGLATKKLGGSRGSVEISYFHLGERDAPQRPTRDRSLETIGLRAYRD
PAPGRFDYESETFYQFGTISSSLAPSAAKSDVSAWFTHLEAGYSFRHPWSPRLSLEFDYASGDGRGGDFGRFDTLFGMRR
AELAPAGLYNAVGRANLLSPAIRIETIPSRRLDAFAAYRPLWLASRFDSFSTTGVRDPSGASGRFAGHQVEARLRYWLVP
KRLRLEWSGLFLGKGRFLRNAPNAPAGGNTLYNSFNATISF

Sequences:

>Translated_441_residues
MRLYLAATLLALPAPALAEDGLTITGSMRLRYEMIQGQARTGFDEKDDLLNVRTIVGGEYRSDGFRLGAELYDSRVYGSE
AGTPVTTGEVNAFELVQAYVGYEARDAFGAGTKLDLQAGRFTLNLGSRRLVAADDYRNTTSGYTGLRADLALRGGVAATF
IYTLPQVRLPDDRASLDANRVKFDKESFDLQLWGGLATKKLGGSRGSVEISYFHLGERDAPQRPTRDRSLETIGLRAYRD
PAPGRFDYESETFYQFGTISSSLAPSAAKSDVSAWFTHLEAGYSFRHPWSPRLSLEFDYASGDGRGGDFGRFDTLFGMRR
AELAPAGLYNAVGRANLLSPAIRIETIPSRRLDAFAAYRPLWLASRFDSFSTTGVRDPSGASGRFAGHQVEARLRYWLVP
KRLRLEWSGLFLGKGRFLRNAPNAPAGGNTLYNSFNATISF
>Mature_441_residues
MRLYLAATLLALPAPALAEDGLTITGSMRLRYEMIQGQARTGFDEKDDLLNVRTIVGGEYRSDGFRLGAELYDSRVYGSE
AGTPVTTGEVNAFELVQAYVGYEARDAFGAGTKLDLQAGRFTLNLGSRRLVAADDYRNTTSGYTGLRADLALRGGVAATF
IYTLPQVRLPDDRASLDANRVKFDKESFDLQLWGGLATKKLGGSRGSVEISYFHLGERDAPQRPTRDRSLETIGLRAYRD
PAPGRFDYESETFYQFGTISSSLAPSAAKSDVSAWFTHLEAGYSFRHPWSPRLSLEFDYASGDGRGGDFGRFDTLFGMRR
AELAPAGLYNAVGRANLLSPAIRIETIPSRRLDAFAAYRPLWLASRFDSFSTTGVRDPSGASGRFAGHQVEARLRYWLVP
KRLRLEWSGLFLGKGRFLRNAPNAPAGGNTLYNSFNATISF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 48576; Mature: 48576

Theoretical pI: Translated: 9.57; Mature: 9.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLYLAATLLALPAPALAEDGLTITGSMRLRYEMIQGQARTGFDEKDDLLNVRTIVGGEY
CEEEEEEHHHHCCCCCHHCCCEEEEECEEEEEEECCCCCCCCCCCCCCCEEEEEEECCCC
RSDGFRLGAELYDSRVYGSEAGTPVTTGEVNAFELVQAYVGYEARDAFGAGTKLDLQAGR
CCCCEEECHHHHHCEEECCCCCCCCCCCCCHHHHHHHHHHCCCHHHHCCCCCEEEEECCE
FTLNLGSRRLVAADDYRNTTSGYTGLRADLALRGGVAATFIYTLPQVRLPDDRASLDANR
EEEECCCCEEEEECCCCCCCCCCCCEEEEEEECCCHHEEEEECCCCEECCCCHHCCCCCC
VKFDKESFDLQLWGGLATKKLGGSRGSVEISYFHLGERDAPQRPTRDRSLETIGLRAYRD
EEECCCCCCEEEECCCHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEECC
PAPGRFDYESETFYQFGTISSSLAPSAAKSDVSAWFTHLEAGYSFRHPWSPRLSLEFDYA
CCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECC
SGDGRGGDFGRFDTLFGMRRAELAPAGLYNAVGRANLLSPAIRIETIPSRRLDAFAAYRP
CCCCCCCCCCHHHHHHCCHHHHCCCCHHHHHHCCHHHCCCEEEEEECCCHHHHHHHHHCH
LWLASRFDSFSTTGVRDPSGASGRFAGHQVEARLRYWLVPKRLRLEWSGLFLGKGRFLRN
HHHHHHCCCCCCCCCCCCCCCCCCCCCHHHEEEEEEEECCHHEEEEEEEEEEECCCCCCC
APNAPAGGNTLYNSFNATISF
CCCCCCCCCCEEECCEEEEEC
>Mature Secondary Structure
MRLYLAATLLALPAPALAEDGLTITGSMRLRYEMIQGQARTGFDEKDDLLNVRTIVGGEY
CEEEEEEHHHHCCCCCHHCCCEEEEECEEEEEEECCCCCCCCCCCCCCCEEEEEEECCCC
RSDGFRLGAELYDSRVYGSEAGTPVTTGEVNAFELVQAYVGYEARDAFGAGTKLDLQAGR
CCCCEEECHHHHHCEEECCCCCCCCCCCCCHHHHHHHHHHCCCHHHHCCCCCEEEEECCE
FTLNLGSRRLVAADDYRNTTSGYTGLRADLALRGGVAATFIYTLPQVRLPDDRASLDANR
EEEECCCCEEEEECCCCCCCCCCCCEEEEEEECCCHHEEEEECCCCEECCCCHHCCCCCC
VKFDKESFDLQLWGGLATKKLGGSRGSVEISYFHLGERDAPQRPTRDRSLETIGLRAYRD
EEECCCCCCEEEECCCHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEECC
PAPGRFDYESETFYQFGTISSSLAPSAAKSDVSAWFTHLEAGYSFRHPWSPRLSLEFDYA
CCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECC
SGDGRGGDFGRFDTLFGMRRAELAPAGLYNAVGRANLLSPAIRIETIPSRRLDAFAAYRP
CCCCCCCCCCHHHHHHCCHHHHCCCCHHHHHHCCHHHCCCEEEEEECCCHHHHHHHHHCH
LWLASRFDSFSTTGVRDPSGASGRFAGHQVEARLRYWLVPKRLRLEWSGLFLGKGRFLRN
HHHHHHCCCCCCCCCCCCCCCCCCCCCHHHEEEEEEEECCHHEEEEEEEEEEECCCCCCC
APNAPAGGNTLYNSFNATISF
CCCCCCCCCCEEECCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA