| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
Click here to switch to the map view.
The map label for this gene is 103487876
Identifier: 103487876
GI number: 103487876
Start: 2531105
End: 2532334
Strand: Reverse
Name: 103487876
Synonym: Sala_2395
Alternate gene names: NA
Gene position: 2532334-2531105 (Counterclockwise)
Preceding gene: 103487877
Following gene: 103487875
Centisome position: 75.7
GC content: 66.26
Gene sequence:
>1230_bases ATGCGTATCTTGATTGCGGTGGTCCTGCTGATGCCGCTGACCGCCCCGCTTTATGCCGAACCATTGTCGTTCGACGCAGC GCTCGACCGCGCCGCGCGCCACGCGCCCGAATTGCAAGGAAGCGAAGCGGGGGTTGCGGCCGCGCAATCGGCCGCCATCG CCGCGGATCGACTGCCCGATCCGAAGCTTGATCTCGCCGTCAAGGACTTCCCGGTGACCGGGCCCGATGCCGGGCGGCTC AATCGCGATAATTTCACCATGCAGGTGGTCGGAATCAGCCAGGAGTTCATCAACCCCGCCAAACGCCGCGCAAGAGCCGC ACGCGCGCAGGCCGACATTGGCATCGCGCAGGCCGACCAGGCGCTCGAGATTCAGAATGTCGCGCTGGGAACGGCTCTTG CCTGGATCGATCTCCATTACGCCAAGCGGCGCTTGAGCCAGCTCGATCTGCTCGACGAAAGCCTCGACGACTTGCAATCG ACGGTGACGGCGCGTCTGGCATCGCGATCCGCGCGTCCGGCGCAGGCGCTCGAGCCCGCGCAATTGCGGGCGGCAATCGC CGACCGGCGCAGTGCGCTTGCGGCCGAAGTCGCGCGCGCCCGGGCGACGCTGGTGCGTTTTACCGGCGATCCGTTGGCCG ATGTGCAGGGCGAGCCACCGCCGTCGACCATCGACGGCGACAAGCTGAAAGCCGGGCTCGCTTCGCTGCCCCGGCTACGC GCCTTCGACGCCCAGATCGTCGCGGCCGATGCCGAGACCCAACTCGCCCGAGCAGACAAACGCCCGGATTGGACGGTGAG CGGCGCCTATGGCCGCCGGGAACCCAATTATGGCGATCTGGTCACCCTCGGCGTTACGGTGGATCTCCCCCTTTTTCCCA AGCGCCGCCAGGAACCCAAAATTGCCGCCCGCGCGAGCGAGGCGTCGCGGGCGCGTTTCGCCCGAATGGCGGTCGAACGC GAAATCGTCGCGGCACTGAGTTCGGACCTCGCCGATCATCGCATGCATCATCAGCAACTCGATAATGCCCGCAAAACCCT GGTACCGCTTGCCAGGCAGCGCGCGCAACTCGATCTCGACAGCTATGCCGCCGGCAATCTCGACCTCGGCACGGCCCTGC TCTCGACGCTCGCGCTGGTCGAGGCCGAAGTCGATGCGCTCGCGCGCGAAGCCGACGTTGCCCGCGACGCGATTCGCATT CAATTTACCTATGGGGACACACAGCCATGA
Upstream 100 bases:
>100_bases GTCCCGCCAACGCATCGCGCGTCCGGGAGGCTGACCGTGGCCGCCCTTGGCTACGCGCCAGGGACGATTTCGCTCACGTC CGAGAAACAAGGGGAACGCC
Downstream 100 bases:
>100_bases GCGATGTTTCAACCGCGGCGCGCTGGCGCGCCGGAATAATGGCCGCCGTCTTGATCGCGGGCGGCGGAGGATATTGGCTG GGCCAGCGTGATAGCGATGT
Product: CzcC family heavy metal RND efflux outer membrane protein
Products: NA
Alternate protein names: CzcC Family Heavy Metal RND Efflux Outer Membrane Protein; Heavy Metal RND Efflux Outer Membrane Protein CzcC Family; Cation Resistance Protein CzcC; Efflux System Outer Membrane Protein; Outer Membrane Cation Efflux Protein
Number of amino acids: Translated: 409; Mature: 409
Protein sequence:
>409_residues MRILIAVVLLMPLTAPLYAEPLSFDAALDRAARHAPELQGSEAGVAAAQSAAIAADRLPDPKLDLAVKDFPVTGPDAGRL NRDNFTMQVVGISQEFINPAKRRARAARAQADIGIAQADQALEIQNVALGTALAWIDLHYAKRRLSQLDLLDESLDDLQS TVTARLASRSARPAQALEPAQLRAAIADRRSALAAEVARARATLVRFTGDPLADVQGEPPPSTIDGDKLKAGLASLPRLR AFDAQIVAADAETQLARADKRPDWTVSGAYGRREPNYGDLVTLGVTVDLPLFPKRRQEPKIAARASEASRARFARMAVER EIVAALSSDLADHRMHHQQLDNARKTLVPLARQRAQLDLDSYAAGNLDLGTALLSTLALVEAEVDALAREADVARDAIRI QFTYGDTQP
Sequences:
>Translated_409_residues MRILIAVVLLMPLTAPLYAEPLSFDAALDRAARHAPELQGSEAGVAAAQSAAIAADRLPDPKLDLAVKDFPVTGPDAGRL NRDNFTMQVVGISQEFINPAKRRARAARAQADIGIAQADQALEIQNVALGTALAWIDLHYAKRRLSQLDLLDESLDDLQS TVTARLASRSARPAQALEPAQLRAAIADRRSALAAEVARARATLVRFTGDPLADVQGEPPPSTIDGDKLKAGLASLPRLR AFDAQIVAADAETQLARADKRPDWTVSGAYGRREPNYGDLVTLGVTVDLPLFPKRRQEPKIAARASEASRARFARMAVER EIVAALSSDLADHRMHHQQLDNARKTLVPLARQRAQLDLDSYAAGNLDLGTALLSTLALVEAEVDALAREADVARDAIRI QFTYGDTQP >Mature_409_residues MRILIAVVLLMPLTAPLYAEPLSFDAALDRAARHAPELQGSEAGVAAAQSAAIAADRLPDPKLDLAVKDFPVTGPDAGRL NRDNFTMQVVGISQEFINPAKRRARAARAQADIGIAQADQALEIQNVALGTALAWIDLHYAKRRLSQLDLLDESLDDLQS TVTARLASRSARPAQALEPAQLRAAIADRRSALAAEVARARATLVRFTGDPLADVQGEPPPSTIDGDKLKAGLASLPRLR AFDAQIVAADAETQLARADKRPDWTVSGAYGRREPNYGDLVTLGVTVDLPLFPKRRQEPKIAARASEASRARFARMAVER EIVAALSSDLADHRMHHQQLDNARKTLVPLARQRAQLDLDSYAAGNLDLGTALLSTLALVEAEVDALAREADVARDAIRI QFTYGDTQP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44089; Mature: 44089
Theoretical pI: Translated: 6.40; Mature: 6.40
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRILIAVVLLMPLTAPLYAEPLSFDAALDRAARHAPELQGSEAGVAAAQSAAIAADRLPD CHHHHHHHHHHHCCCCHHCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCC PKLDLAVKDFPVTGPDAGRLNRDNFTMQVVGISQEFINPAKRRARAARAQADIGIAQADQ CCCCEEEECCCCCCCCCCCCCCCCEEEEEEECCHHHCCHHHHHHHHHHHHHHCCHHHCCC ALEIQNVALGTALAWIDLHYAKRRLSQLDLLDESLDDLQSTVTARLASRSARPAQALEPA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCHH QLRAAIADRRSALAAEVARARATLVRFTGDPLADVQGEPPPSTIDGDKLKAGLASLPRLR HHHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHCCCCCCCCCCCCCHHHHHHHHHCCHHH AFDAQIVAADAETQLARADKRPDWTVSGAYGRREPNYGDLVTLGVTVDLPLFPKRRQEPK HCCCEEEECCCHHHHHHHCCCCCEEEECCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCC IAARASEASRARFARMAVEREIVAALSSDLADHRMHHQQLDNARKTLVPLARQRAQLDLD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH SYAAGNLDLGTALLSTLALVEAEVDALAREADVARDAIRIQFTYGDTQP HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCC >Mature Secondary Structure MRILIAVVLLMPLTAPLYAEPLSFDAALDRAARHAPELQGSEAGVAAAQSAAIAADRLPD CHHHHHHHHHHHCCCCHHCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCC PKLDLAVKDFPVTGPDAGRLNRDNFTMQVVGISQEFINPAKRRARAARAQADIGIAQADQ CCCCEEEECCCCCCCCCCCCCCCCEEEEEEECCHHHCCHHHHHHHHHHHHHHCCHHHCCC ALEIQNVALGTALAWIDLHYAKRRLSQLDLLDESLDDLQSTVTARLASRSARPAQALEPA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCHH QLRAAIADRRSALAAEVARARATLVRFTGDPLADVQGEPPPSTIDGDKLKAGLASLPRLR HHHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHCCCCCCCCCCCCCHHHHHHHHHCCHHH AFDAQIVAADAETQLARADKRPDWTVSGAYGRREPNYGDLVTLGVTVDLPLFPKRRQEPK HCCCEEEECCCHHHHHHHCCCCCEEEECCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCC IAARASEASRARFARMAVEREIVAALSSDLADHRMHHQQLDNARKTLVPLARQRAQLDLD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH SYAAGNLDLGTALLSTLALVEAEVDALAREADVARDAIRIQFTYGDTQP HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA