| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is cusB [H]
Identifier: 103487875
GI number: 103487875
Start: 2529876
End: 2531108
Strand: Reverse
Name: cusB [H]
Synonym: Sala_2394
Alternate gene names: 103487875
Gene position: 2531108-2529876 (Counterclockwise)
Preceding gene: 103487876
Following gene: 103487874
Centisome position: 75.66
GC content: 66.42
Gene sequence:
>1233_bases ATGAGCGATGTTTCAACCGCGGCGCGCTGGCGCGCCGGAATAATGGCCGCCGTCTTGATCGCGGGCGGCGGAGGATATTG GCTGGGCCAGCGTGATAGCGATGTCCCATCGAGCGCGGCGAGCGATGAGGGGCGCAAAATCCTTTATTATTATGACCCGA TGTTTCCGAACCAGAAGTTCGAAAAACCCGGCAAATCGCCGTTCATGGATATGGAGCTTGTACCCAAATATGCCGACGAA GGCGGCGCGAACGGCGCTCCTTCAGGCATTTCGGTCGATCCGTCGGCGATGCAGAATCTGGGAATGCGCGTCGTCGCCGC CGAAACGGGCAGCCTCGCGGCGAGTTTCGACGTCACCGGCACGATCGACTTCAACGAACGCGACGTTGCAATCGTGCAGG CCCGCTCGGGCGGCTTCGTCGAGCGCGTCTATCGGCTGGCCCCGGGCGATGTCATTCGTGCCGGGACGCCGATCGCCGAT GTGCAATCGCCCGAATGGGGCGGCGCACAGACCGAATATCTGAGCGTCAAGCGGCTCGGCAAGCCCGAACTGACGGCGGC GGCGCGCCAGCGGCTGCGGCTGATGGGCATGGCCGACACGGTCATCGCCCAGGTCGATCGCACGGGGCGGACGAGCGGCA CGGTGACGATCCGGTCGCCGATCGGCGGCGTGGTCCGGTCGCTCGACGCGCGCGCCGGAGTGACGCTGGCGCAGGGGCAA ACGCTTGCGGAGGTCTCGGGACTGGGCAGCGTCTGGCTCCACGCCGCCTTGCCCGAGGCGCAAGCCGCGTCGGTGCGGGT CGGGCAACGCGCGGTCGCGACGCTCACCGCCTTTCCCGGTGAGACGTTCGGCGGGCGTGTCATCGCGATCCTGCCAACAA TACAAAGCGACAGCCGGACGCTCACCGTCCGCATCGAGCTTCCCAATCGTGGCGGCCGGTTGCGCCCCGGCATGTTCGCC AATGTCACGCTGGGTGGCGACGCCGAACCGGCGCTGTTGGTGCCGAGCGAGGCGGTCATCCGCACCGGCACCCGCAGCAT CGTCATGCTCGCCACGGGCGATGGGCGCTATCATCCGGCCGAAGTGCAAACCGGGCGCGAGGGCGATGGCAAGACCGAAA TCTTGCGCGGGCTGACGGTTGGCGAAAAAATCGTCGCCTCGGGTCAGTTCCTGCTCGATTCCGAAGCAAGCCTGACCGGC ATCGCCGTCCGCCCGCTTGGTGACGCGAAATGA
Upstream 100 bases:
>100_bases CGCTCGCGCTGGTCGAGGCCGAAGTCGATGCGCTCGCGCGCGAAGCCGACGTTGCCCGCGACGCGATTCGCATTCAATTT ACCTATGGGGACACACAGCC
Downstream 100 bases:
>100_bases TCAAGCGGATCATTCGCGCCTCGGTCGCCGCGCGCGGGCTGGTCGTCGCCGCGGCGCTGATCCTGACGCTTGTCGGGATC GCCGCGGTGCGGACGACGCC
Product: secretion protein HlyD
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 410; Mature: 409
Protein sequence:
>410_residues MSDVSTAARWRAGIMAAVLIAGGGGYWLGQRDSDVPSSAASDEGRKILYYYDPMFPNQKFEKPGKSPFMDMELVPKYADE GGANGAPSGISVDPSAMQNLGMRVVAAETGSLAASFDVTGTIDFNERDVAIVQARSGGFVERVYRLAPGDVIRAGTPIAD VQSPEWGGAQTEYLSVKRLGKPELTAAARQRLRLMGMADTVIAQVDRTGRTSGTVTIRSPIGGVVRSLDARAGVTLAQGQ TLAEVSGLGSVWLHAALPEAQAASVRVGQRAVATLTAFPGETFGGRVIAILPTIQSDSRTLTVRIELPNRGGRLRPGMFA NVTLGGDAEPALLVPSEAVIRTGTRSIVMLATGDGRYHPAEVQTGREGDGKTEILRGLTVGEKIVASGQFLLDSEASLTG IAVRPLGDAK
Sequences:
>Translated_410_residues MSDVSTAARWRAGIMAAVLIAGGGGYWLGQRDSDVPSSAASDEGRKILYYYDPMFPNQKFEKPGKSPFMDMELVPKYADE GGANGAPSGISVDPSAMQNLGMRVVAAETGSLAASFDVTGTIDFNERDVAIVQARSGGFVERVYRLAPGDVIRAGTPIAD VQSPEWGGAQTEYLSVKRLGKPELTAAARQRLRLMGMADTVIAQVDRTGRTSGTVTIRSPIGGVVRSLDARAGVTLAQGQ TLAEVSGLGSVWLHAALPEAQAASVRVGQRAVATLTAFPGETFGGRVIAILPTIQSDSRTLTVRIELPNRGGRLRPGMFA NVTLGGDAEPALLVPSEAVIRTGTRSIVMLATGDGRYHPAEVQTGREGDGKTEILRGLTVGEKIVASGQFLLDSEASLTG IAVRPLGDAK >Mature_409_residues SDVSTAARWRAGIMAAVLIAGGGGYWLGQRDSDVPSSAASDEGRKILYYYDPMFPNQKFEKPGKSPFMDMELVPKYADEG GANGAPSGISVDPSAMQNLGMRVVAAETGSLAASFDVTGTIDFNERDVAIVQARSGGFVERVYRLAPGDVIRAGTPIADV QSPEWGGAQTEYLSVKRLGKPELTAAARQRLRLMGMADTVIAQVDRTGRTSGTVTIRSPIGGVVRSLDARAGVTLAQGQT LAEVSGLGSVWLHAALPEAQAASVRVGQRAVATLTAFPGETFGGRVIAILPTIQSDSRTLTVRIELPNRGGRLRPGMFAN VTLGGDAEPALLVPSEAVIRTGTRSIVMLATGDGRYHPAEVQTGREGDGKTEILRGLTVGEKIVASGQFLLDSEASLTGI AVRPLGDAK
Specific function: Part of a cation efflux system that mediates resistance to copper and silver [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family [H]
Homologues:
Organism=Escherichia coli, GI1786787, Length=389, Percent_Identity=39.3316195372751, Blast_Score=295, Evalue=3e-81,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006143 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42979; Mature: 42848
Theoretical pI: Translated: 7.67; Mature: 7.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDVSTAARWRAGIMAAVLIAGGGGYWLGQRDSDVPSSAASDEGRKILYYYDPMFPNQKF CCCHHHHHHHHHHHEEEEEEECCCCEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHH EKPGKSPFMDMELVPKYADEGGANGAPSGISVDPSAMQNLGMRVVAAETGSLAASFDVTG CCCCCCCCCCHHHCCCHHCCCCCCCCCCCCEECHHHHHHCCEEEEEECCCCEEEEEEEEE TIDFNERDVAIVQARSGGFVERVYRLAPGDVIRAGTPIADVQSPEWGGAQTEYLSVKRLG EEECCCCCEEEEEECCCCHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCEEEEHHHCC KPELTAAARQRLRLMGMADTVIAQVDRTGRTSGTVTIRSPIGGVVRSLDARAGVTLAQGQ CCHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHCCEEEECCC TLAEVSGLGSVWLHAALPEAQAASVRVGQRAVATLTAFPGETFGGRVIAILPTIQSDSRT CHHHHHCCCCEEEEECCCCCHHHHHHHCCCEEEEEEECCCCCCCCEEEEEEECCCCCCEE LTVRIELPNRGGRLRPGMFANVTLGGDAEPALLVPSEAVIRTGTRSIVMLATGDGRYHPA EEEEEEECCCCCCCCCCEEEEEEECCCCCCEEECCCHHHHCCCCCEEEEEEECCCCCCCC EVQTGREGDGKTEILRGLTVGEKIVASGQFLLDSEASLTGIAVRPLGDAK CCCCCCCCCCHHHHHHHCCCCHHHHHCCCEEEECCCCEEEEEEECCCCCC >Mature Secondary Structure SDVSTAARWRAGIMAAVLIAGGGGYWLGQRDSDVPSSAASDEGRKILYYYDPMFPNQKF CCHHHHHHHHHHHEEEEEEECCCCEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHH EKPGKSPFMDMELVPKYADEGGANGAPSGISVDPSAMQNLGMRVVAAETGSLAASFDVTG CCCCCCCCCCHHHCCCHHCCCCCCCCCCCCEECHHHHHHCCEEEEEECCCCEEEEEEEEE TIDFNERDVAIVQARSGGFVERVYRLAPGDVIRAGTPIADVQSPEWGGAQTEYLSVKRLG EEECCCCCEEEEEECCCCHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCEEEEHHHCC KPELTAAARQRLRLMGMADTVIAQVDRTGRTSGTVTIRSPIGGVVRSLDARAGVTLAQGQ CCHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHCCEEEECCC TLAEVSGLGSVWLHAALPEAQAASVRVGQRAVATLTAFPGETFGGRVIAILPTIQSDSRT CHHHHHCCCCEEEEECCCCCHHHHHHHCCCEEEEEEECCCCCCCCEEEEEEECCCCCCEE LTVRIELPNRGGRLRPGMFANVTLGGDAEPALLVPSEAVIRTGTRSIVMLATGDGRYHPA EEEEEEECCCCCCCCCCEEEEEEECCCCCCEEECCCHHHHCCCCCEEEEEEECCCCCCCC EVQTGREGDGKTEILRGLTVGEKIVASGQFLLDSEASLTGIAVRPLGDAK CCCCCCCCCCHHHHHHHCCCCHHHHHCCCEEEECCCCEEEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]