| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is yaiI [C]
Identifier: 103487857
GI number: 103487857
Start: 2498143
End: 2498607
Strand: Reverse
Name: yaiI [C]
Synonym: Sala_2376
Alternate gene names: 103487857
Gene position: 2498607-2498143 (Counterclockwise)
Preceding gene: 103487858
Following gene: 103487856
Centisome position: 74.69
GC content: 68.82
Gene sequence:
>465_bases ATGAGCGCGCCCGTCATCCTTGTCGATGCCGACGCCTGCCCGGTGAAGGAGGAAATCTATCGCGTCGCGTGGCGGCACGG GGCCAAGGTCAAGGTCGTGAGCAACAGCCGGCTGCGCGTGCCCGACCACCCGCTGATCGAGCGGGTGGTGGTGTCGGACG GTTTCGACGCTGCCGACGACTGGATCGCCGAAGCCGCGAATGCGCAGAGCATCGTGGTCACCGCCGACATATTGCTCGCC GACCGCGCGCTGAAGGCAGGGGCAAGCGTGCTCGCTCCCAACGGCAAACCCTTCACGCTGGCGTCGATCGGCCCCGCGAT CGCGACGCGCGCGATCATGGCCGACCTGCGCGCAGGGATGGGTGAGGGGGTGGGCGGACCGCCGCCCTTTTCCAAGGCCG ATCGCGCGCGATTCCTGCAAGCGCTCGACGCCGCGCTGGTACGGGTCAAGCGGGGGTTGGCTTGA
Upstream 100 bases:
>100_bases TGCGCTGGATGAAGGCGATGCAGCCCGAACGCTTTTATGCGCTCATCTATGGGCTGATGGTGCTGCTTGGCGCGAAGCTG CTATGGGACGGGCTTGGCGG
Downstream 100 bases:
>100_bases CCGCGCGGCGCAGGCGCGACATGTTTGCGCGATGGCGCACCGCTATACGAGCTTCGGGGATTTCTGGCCCTTTTACCTGC GCGAGCATAGCAAGGCGTCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 154; Mature: 153
Protein sequence:
>154_residues MSAPVILVDADACPVKEEIYRVAWRHGAKVKVVSNSRLRVPDHPLIERVVVSDGFDAADDWIAEAANAQSIVVTADILLA DRALKAGASVLAPNGKPFTLASIGPAIATRAIMADLRAGMGEGVGGPPPFSKADRARFLQALDAALVRVKRGLA
Sequences:
>Translated_154_residues MSAPVILVDADACPVKEEIYRVAWRHGAKVKVVSNSRLRVPDHPLIERVVVSDGFDAADDWIAEAANAQSIVVTADILLA DRALKAGASVLAPNGKPFTLASIGPAIATRAIMADLRAGMGEGVGGPPPFSKADRARFLQALDAALVRVKRGLA >Mature_153_residues SAPVILVDADACPVKEEIYRVAWRHGAKVKVVSNSRLRVPDHPLIERVVVSDGFDAADDWIAEAANAQSIVVTADILLAD RALKAGASVLAPNGKPFTLASIGPAIATRAIMADLRAGMGEGVGGPPPFSKADRARFLQALDAALVRVKRGLA
Specific function: Unknown
COG id: COG1671
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0178 family
Homologues:
Organism=Escherichia coli, GI87081732, Length=150, Percent_Identity=40.6666666666667, Blast_Score=96, Evalue=8e-22,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y2376_SPHAL (Q1GQI7)
Other databases:
- EMBL: CP000356 - RefSeq: YP_617418.1 - GeneID: 4080816 - GenomeReviews: CP000356_GR - KEGG: sal:Sala_2376 - NMPDR: fig|317655.9.peg.2299 - HOGENOM: HBG363074 - OMA: PLASRCV - ProtClustDB: CLSK846793 - BioCyc: SALA317655:SALA_2376-MONOMER - HAMAP: MF_00489 - InterPro: IPR003791
Pfam domain/function: PF02639 DUF188
EC number: NA
Molecular weight: Translated: 16145; Mature: 16014
Theoretical pI: Translated: 9.26; Mature: 9.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAPVILVDADACPVKEEIYRVAWRHGAKVKVVSNSRLRVPDHPLIERVVVSDGFDAADD CCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEECCCEEECCCCHHHHHHHHCCCCCCHHH WIAEAANAQSIVVTADILLADRALKAGASVLAPNGKPFTLASIGPAIATRAIMADLRAGM HHHHHCCCCEEEEEHHHHHHHHHHHCCCEEECCCCCCEEEHHHCHHHHHHHHHHHHHHCC GEGVGGPPPFSKADRARFLQALDAALVRVKRGLA CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure SAPVILVDADACPVKEEIYRVAWRHGAKVKVVSNSRLRVPDHPLIERVVVSDGFDAADD CCCEEEEECCCCCHHHHHHHHHHHCCCEEEEECCCEEECCCCHHHHHHHHCCCCCCHHH WIAEAANAQSIVVTADILLADRALKAGASVLAPNGKPFTLASIGPAIATRAIMADLRAGM HHHHHCCCCEEEEEHHHHHHHHHHHCCCEEECCCCCCEEEHHHCHHHHHHHHHHHHHHCC GEGVGGPPPFSKADRARFLQALDAALVRVKRGLA CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA