Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is yaiI [C]

Identifier: 103487857

GI number: 103487857

Start: 2498143

End: 2498607

Strand: Reverse

Name: yaiI [C]

Synonym: Sala_2376

Alternate gene names: 103487857

Gene position: 2498607-2498143 (Counterclockwise)

Preceding gene: 103487858

Following gene: 103487856

Centisome position: 74.69

GC content: 68.82

Gene sequence:

>465_bases
ATGAGCGCGCCCGTCATCCTTGTCGATGCCGACGCCTGCCCGGTGAAGGAGGAAATCTATCGCGTCGCGTGGCGGCACGG
GGCCAAGGTCAAGGTCGTGAGCAACAGCCGGCTGCGCGTGCCCGACCACCCGCTGATCGAGCGGGTGGTGGTGTCGGACG
GTTTCGACGCTGCCGACGACTGGATCGCCGAAGCCGCGAATGCGCAGAGCATCGTGGTCACCGCCGACATATTGCTCGCC
GACCGCGCGCTGAAGGCAGGGGCAAGCGTGCTCGCTCCCAACGGCAAACCCTTCACGCTGGCGTCGATCGGCCCCGCGAT
CGCGACGCGCGCGATCATGGCCGACCTGCGCGCAGGGATGGGTGAGGGGGTGGGCGGACCGCCGCCCTTTTCCAAGGCCG
ATCGCGCGCGATTCCTGCAAGCGCTCGACGCCGCGCTGGTACGGGTCAAGCGGGGGTTGGCTTGA

Upstream 100 bases:

>100_bases
TGCGCTGGATGAAGGCGATGCAGCCCGAACGCTTTTATGCGCTCATCTATGGGCTGATGGTGCTGCTTGGCGCGAAGCTG
CTATGGGACGGGCTTGGCGG

Downstream 100 bases:

>100_bases
CCGCGCGGCGCAGGCGCGACATGTTTGCGCGATGGCGCACCGCTATACGAGCTTCGGGGATTTCTGGCCCTTTTACCTGC
GCGAGCATAGCAAGGCGTCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 154; Mature: 153

Protein sequence:

>154_residues
MSAPVILVDADACPVKEEIYRVAWRHGAKVKVVSNSRLRVPDHPLIERVVVSDGFDAADDWIAEAANAQSIVVTADILLA
DRALKAGASVLAPNGKPFTLASIGPAIATRAIMADLRAGMGEGVGGPPPFSKADRARFLQALDAALVRVKRGLA

Sequences:

>Translated_154_residues
MSAPVILVDADACPVKEEIYRVAWRHGAKVKVVSNSRLRVPDHPLIERVVVSDGFDAADDWIAEAANAQSIVVTADILLA
DRALKAGASVLAPNGKPFTLASIGPAIATRAIMADLRAGMGEGVGGPPPFSKADRARFLQALDAALVRVKRGLA
>Mature_153_residues
SAPVILVDADACPVKEEIYRVAWRHGAKVKVVSNSRLRVPDHPLIERVVVSDGFDAADDWIAEAANAQSIVVTADILLAD
RALKAGASVLAPNGKPFTLASIGPAIATRAIMADLRAGMGEGVGGPPPFSKADRARFLQALDAALVRVKRGLA

Specific function: Unknown

COG id: COG1671

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0178 family

Homologues:

Organism=Escherichia coli, GI87081732, Length=150, Percent_Identity=40.6666666666667, Blast_Score=96, Evalue=8e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y2376_SPHAL (Q1GQI7)

Other databases:

- EMBL:   CP000356
- RefSeq:   YP_617418.1
- GeneID:   4080816
- GenomeReviews:   CP000356_GR
- KEGG:   sal:Sala_2376
- NMPDR:   fig|317655.9.peg.2299
- HOGENOM:   HBG363074
- OMA:   PLASRCV
- ProtClustDB:   CLSK846793
- BioCyc:   SALA317655:SALA_2376-MONOMER
- HAMAP:   MF_00489
- InterPro:   IPR003791

Pfam domain/function: PF02639 DUF188

EC number: NA

Molecular weight: Translated: 16145; Mature: 16014

Theoretical pI: Translated: 9.26; Mature: 9.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAPVILVDADACPVKEEIYRVAWRHGAKVKVVSNSRLRVPDHPLIERVVVSDGFDAADD
CCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEECCCEEECCCCHHHHHHHHCCCCCCHHH
WIAEAANAQSIVVTADILLADRALKAGASVLAPNGKPFTLASIGPAIATRAIMADLRAGM
HHHHHCCCCEEEEEHHHHHHHHHHHCCCEEECCCCCCEEEHHHCHHHHHHHHHHHHHHCC
GEGVGGPPPFSKADRARFLQALDAALVRVKRGLA
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SAPVILVDADACPVKEEIYRVAWRHGAKVKVVSNSRLRVPDHPLIERVVVSDGFDAADD
CCCEEEEECCCCCHHHHHHHHHHHCCCEEEEECCCEEECCCCHHHHHHHHCCCCCCHHH
WIAEAANAQSIVVTADILLADRALKAGASVLAPNGKPFTLASIGPAIATRAIMADLRAGM
HHHHHCCCCEEEEEHHHHHHHHHHHCCCEEECCCCCCEEEHHHCHHHHHHHHHHHHHHCC
GEGVGGPPPFSKADRARFLQALDAALVRVKRGLA
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA