| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is osmC [H]
Identifier: 103487855
GI number: 103487855
Start: 2497243
End: 2497671
Strand: Reverse
Name: osmC [H]
Synonym: Sala_2374
Alternate gene names: 103487855
Gene position: 2497671-2497243 (Counterclockwise)
Preceding gene: 103487856
Following gene: 103487854
Centisome position: 74.66
GC content: 65.03
Gene sequence:
>429_bases ATGACCGTCAACCGCGCATCCGTTCGTTACGAAGGCTTTGGCAAGGAAGGGAGGGGAGCGATCACGACCGGGTCGAGGGT GCTTGACGCACAGCCCTATGGCTTCGCGACGCGCTTCGAGGGTCAGCCGGGCACAAACCCCGAGGAGCTGATCGCCGCGG CGCACGCCGCCTGCTTCACCATGGCGCTGTCTTTCGGGCTCGCGCGTGCGGGATATTCGGGCGACACGCTGGAGACGCGC GCCGCGGTGACGCTGGAGCAGCAGGACGGCGGCTTCACGATCACCAAGTCGGCGCTGACGCTGGCCGCCAAAGTGCCGGG GATCGATGCCGACGAGTTCGCCCGGCTGGCTGAAGAGGCCGAGAGGAATTGTCCGGTGTCGAAGCTGCTCGATTGTGAAA TCACACTCGAACACAGCCTCGAATCCTGA
Upstream 100 bases:
>100_bases CGGAGTGAGCGATCGTGTCTGGCGCAAATGATAGGTAACGCAATGGCATCGCCCGCCGCAGATGCACCATTGCCGCCCGA TTGATCAAGGAGACATTGCC
Downstream 100 bases:
>100_bases GCTTGCCTTGGCGGCGTATCGCAGCGGCGGTGGCCGTGCGTCGTCGATGAAGGCGAATGCCGCCTGCGCCGCAGGCGGCA ATGTCGGGCGTTGCAGCGGG
Product: OsmC-like protein
Products: NA
Alternate protein names: Osmotically-inducible protein C [H]
Number of amino acids: Translated: 142; Mature: 141
Protein sequence:
>142_residues MTVNRASVRYEGFGKEGRGAITTGSRVLDAQPYGFATRFEGQPGTNPEELIAAAHAACFTMALSFGLARAGYSGDTLETR AAVTLEQQDGGFTITKSALTLAAKVPGIDADEFARLAEEAERNCPVSKLLDCEITLEHSLES
Sequences:
>Translated_142_residues MTVNRASVRYEGFGKEGRGAITTGSRVLDAQPYGFATRFEGQPGTNPEELIAAAHAACFTMALSFGLARAGYSGDTLETR AAVTLEQQDGGFTITKSALTLAAKVPGIDADEFARLAEEAERNCPVSKLLDCEITLEHSLES >Mature_141_residues TVNRASVRYEGFGKEGRGAITTGSRVLDAQPYGFATRFEGQPGTNPEELIAAAHAACFTMALSFGLARAGYSGDTLETRA AVTLEQQDGGFTITKSALTLAAKVPGIDADEFARLAEEAERNCPVSKLLDCEITLEHSLES
Specific function: Preferentially metabolizes organic hydroperoxides over inorganic hydrogen peroxide [H]
COG id: COG1764
COG function: function code O; Predicted redox protein, regulator of disulfide bond formation
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the osmC/ohr family [H]
Homologues:
Organism=Escherichia coli, GI1787757, Length=143, Percent_Identity=51.7482517482517, Blast_Score=150, Evalue=3e-38,
Paralogues:
None
Copy number: 3180 Molecules/Cell In: Early Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015946 - InterPro: IPR003718 - InterPro: IPR019904 [H]
Pfam domain/function: PF02566 OsmC [H]
EC number: =1.11.1.15 [H]
Molecular weight: Translated: 15075; Mature: 14944
Theoretical pI: Translated: 4.53; Mature: 4.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTVNRASVRYEGFGKEGRGAITTGSRVLDAQPYGFATRFEGQPGTNPEELIAAAHAACFT CCCCCCEEEECCCCCCCCCEEECCCEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHH MALSFGLARAGYSGDTLETRAAVTLEQQDGGFTITKSALTLAAKVPGIDADEFARLAEEA HHHHHHHHHCCCCCCCCCCEEEEEEEECCCCEEEEHHHEEEECCCCCCCHHHHHHHHHHH ERNCPVSKLLDCEITLEHSLES HHCCCHHHHEEEEEEECCCCCC >Mature Secondary Structure TVNRASVRYEGFGKEGRGAITTGSRVLDAQPYGFATRFEGQPGTNPEELIAAAHAACFT CCCCCEEEECCCCCCCCCEEECCCEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHH MALSFGLARAGYSGDTLETRAAVTLEQQDGGFTITKSALTLAAKVPGIDADEFARLAEEA HHHHHHHHHCCCCCCCCCCEEEEEEEECCCCEEEEHHHEEEECCCCCCCHHHHHHHHHHH ERNCPVSKLLDCEITLEHSLES HHCCCHHHHEEEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1715407; 9097039; 9278503; 9298646; 14627744 [H]