| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487848
Identifier: 103487848
GI number: 103487848
Start: 2490869
End: 2491273
Strand: Reverse
Name: 103487848
Synonym: Sala_2367
Alternate gene names: NA
Gene position: 2491273-2490869 (Counterclockwise)
Preceding gene: 103487849
Following gene: 103487843
Centisome position: 74.47
GC content: 62.96
Gene sequence:
>405_bases ATGCTCAAGACCCACCATGGTTCGTGCCACTGCGGCGCCGTCAAGTTCGAGGCCGACATCGACCTCGATGCGGGGACGGG CAAGTGCAACTGCTCGATCTGCACCAAGAAACGGAACTGGAGCGCGCAGATCGAGCCGGGGGCGTTTCGCCTGCTGAGCG ATCCGGCGGCGCTGTCCGACTATCAGTTCGGGTCGAACAGCGCGCATCATGTCTTTTGCAAGACGTGCGGCGTGTCGGCG TTCGGGCACGGTTATGTCGAGGAAATCGGCGGTGCCTATGTTTCGGTTTCGATCGCGTGCCTCGACGATCTGACCCCCGC CGACATGGCGGCGCTGCCCGTGACCCATATGGACGGCGCGGGCAATAATTGGTGGAACCCGCCAGAGGTCACGGCGCATC TGTGA
Upstream 100 bases:
>100_bases AAGGGGTGGGACGACGCTTCCTGACATGATCTGTCAGGGGGCTTCGTTACATCGCTTCGGGTGAAAGGCGCCTTCACGCG CCGCCAACCGGAGGATGAAG
Downstream 100 bases:
>100_bases GGGTGCCGATCATGGAGCCGCCGCAACCGGCCGCGCGGGCAGCGCGATCAGTAACCCAGCGTCGCTTCGAGGAACCAGAT GCGCTGCTGCGTCTCGTCGG
Product: glutathione-dependent formaldehyde-activating, GFA
Products: NA
Alternate protein names: Glutathione-Dependent Formaldehyde-Activating; Glutathione-Dependent Formaldehyde-Activating Protein GFA; Glutathione-Dependent Formaldehyde-Activating Protein; Glutathione-Dependent Formaldehyde-Activating Protein Gfa
Number of amino acids: Translated: 134; Mature: 134
Protein sequence:
>134_residues MLKTHHGSCHCGAVKFEADIDLDAGTGKCNCSICTKKRNWSAQIEPGAFRLLSDPAALSDYQFGSNSAHHVFCKTCGVSA FGHGYVEEIGGAYVSVSIACLDDLTPADMAALPVTHMDGAGNNWWNPPEVTAHL
Sequences:
>Translated_134_residues MLKTHHGSCHCGAVKFEADIDLDAGTGKCNCSICTKKRNWSAQIEPGAFRLLSDPAALSDYQFGSNSAHHVFCKTCGVSA FGHGYVEEIGGAYVSVSIACLDDLTPADMAALPVTHMDGAGNNWWNPPEVTAHL >Mature_134_residues MLKTHHGSCHCGAVKFEADIDLDAGTGKCNCSICTKKRNWSAQIEPGAFRLLSDPAALSDYQFGSNSAHHVFCKTCGVSA FGHGYVEEIGGAYVSVSIACLDDLTPADMAALPVTHMDGAGNNWWNPPEVTAHL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI56118234, Length=108, Percent_Identity=37.962962962963, Blast_Score=76, Evalue=7e-15, Organism=Caenorhabditis elegans, GI25149380, Length=79, Percent_Identity=41.7721518987342, Blast_Score=67, Evalue=4e-12, Organism=Caenorhabditis elegans, GI25149382, Length=79, Percent_Identity=41.7721518987342, Blast_Score=66, Evalue=4e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14239; Mature: 14239
Theoretical pI: Translated: 6.05; Mature: 6.05
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
6.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 8.2 %Cys+Met (Translated Protein) 6.0 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 8.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLKTHHGSCHCGAVKFEADIDLDAGTGKCNCSICTKKRNWSAQIEPGAFRLLSDPAALSD CCCCCCCCEEEEEEEEEECEEEECCCCEEEEEEEECCCCCCEEECCCEEEEECCCCCCCC YQFGSNSAHHVFCKTCGVSAFGHGYVEEIGGAYVSVSIACLDDLTPADMAALPVTHMDGA CCCCCCCCCEEEEEECCCCCCCCCHHHHHCCEEEEEEEEEECCCCCCCCEECCEEECCCC GNNWWNPPEVTAHL CCCCCCCCCEEECC >Mature Secondary Structure MLKTHHGSCHCGAVKFEADIDLDAGTGKCNCSICTKKRNWSAQIEPGAFRLLSDPAALSD CCCCCCCCEEEEEEEEEECEEEECCCCEEEEEEEECCCCCCEEECCCEEEEECCCCCCCC YQFGSNSAHHVFCKTCGVSAFGHGYVEEIGGAYVSVSIACLDDLTPADMAALPVTHMDGA CCCCCCCCCEEEEEECCCCCCCCCHHHHHCCEEEEEEEEEECCCCCCCCEECCEEECCCC GNNWWNPPEVTAHL CCCCCCCCCEEECC
PDB accession: NA
Resolution: NA
Structure class: Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA