| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487840
Identifier: 103487840
GI number: 103487840
Start: 2484997
End: 2486178
Strand: Reverse
Name: 103487840
Synonym: Sala_2359
Alternate gene names: NA
Gene position: 2486178-2484997 (Counterclockwise)
Preceding gene: 103487841
Following gene: 103487839
Centisome position: 74.32
GC content: 68.19
Gene sequence:
>1182_bases ATGCGCCGCTGGTTGATCGCCCTTTTGATCGTCGTCGCGCTGGCCGCGCTCGCCTTTTTCACGCTCGCGCCGGGGATGAT CGAGCGCGACCTCAACCGGATCGACGGCAAGCCGCTGCCGCAGGTGACGGCGCGCGCAGAGGCGCTGCACCAGACGCTCA CGATCGTCGATCTGCACAGCGACAGCCTGTTGTGGAGCCGCGATTTCCTGGATCGCGCCGAGCGCGGCCATATGGACCTG CCGCGGCTGAAGGACGGCCATGTCGCGCTGCAGGTGCTCGCGAGCACGACCAAATCGCCCAAGGGGCAGAATTACCACGC GAACGGCGCCGACAGCGACAATATCACCGGCCTCGTGATCGCGCAGCTCCAGCCGGTGCGGACGTGGACCTCGCTGCTCG AACGCTCGCTCTGGCACGCCGAAAAGCTGCACCGCGCGGCCGCGGCGTCGAACGGCACGCTGAAACCCGTCGCGACCACC GCCGACCTCGACGCGCTGCTCGCCGCGCGGCGCGGCAAGCCGCTCACCACCGGCGCGCTGCTCAGCGTCGAGGGGCTGCA CAATCTCGAAGGCGACATTGCCAATCTGGACAAGCTCTACGCCGCGGGCTTCCGCATGGCGGGGCTCACCCATTTCTTCG ACAATGAACTCGCAGGCTCGATGCACGGGCTCAAGAAAGGCGGGCTCACCCCGCTGGGGCGGCAGGTCGTGACCGCGATG GAGGCGAAGGGCATGATCGTCGACATCGCGCATTGCAGCGAGGCCTGCGTCGCCGACATATTGAAAATGGCGCGCCGCCC CGTCGTGTCCAGCCACGGCGGGGTGCAGGCAACGTGCAAGGTCAACCGCAACCTGTCGGACGCGCAGATTCGCGGCGTCG CCGCAACCGGCGGCCTCGTCGGCATCGGTTACTGGGACGCCGCGGTGTGCGACACCTCGCCCGCGAGCATCGCGCGCGCG ATGAAGCACGTCCGCGACCTCGTCGGCATAAATCATGTCGCGCTCGGCAGCGATTATGACGGCGCCACCACCGTGCGCTT CGACACCGCGCAGCTGGTGCAGGTGACGCAGGCGCTGATCGACGCGGGCTTTTCCGACGACGAAATCCGCGCCGCGATGG GCGGCAATGCGATCCGCGTGCTGAAAGCGGGGCTGGTGCCCCTCACGCCGCCGGCGCCATGA
Upstream 100 bases:
>100_bases CGCGGCAATCCAGAGCGCGCGTCAACCGCTGTGGATTGCTTCGCTTCGCTCGCAATGACGGCGATATTTTATTCCGGCCT TTGCTCTAAAGGAGAAGAGG
Downstream 100 bases:
>100_bases TCCGCCTCGACGGCCACGCGCGCATCGAAGCGCCGCTGCGCGGCGGCGTCATCGCGCTCGGCAATTTCGACGGCTTCCAC GCCGGTCACCAGGCGGTCGT
Product: peptidase M19, renal dipeptidase
Products: NA
Alternate protein names: ORF X [H]
Number of amino acids: Translated: 393; Mature: 393
Protein sequence:
>393_residues MRRWLIALLIVVALAALAFFTLAPGMIERDLNRIDGKPLPQVTARAEALHQTLTIVDLHSDSLLWSRDFLDRAERGHMDL PRLKDGHVALQVLASTTKSPKGQNYHANGADSDNITGLVIAQLQPVRTWTSLLERSLWHAEKLHRAAAASNGTLKPVATT ADLDALLAARRGKPLTTGALLSVEGLHNLEGDIANLDKLYAAGFRMAGLTHFFDNELAGSMHGLKKGGLTPLGRQVVTAM EAKGMIVDIAHCSEACVADILKMARRPVVSSHGGVQATCKVNRNLSDAQIRGVAATGGLVGIGYWDAAVCDTSPASIARA MKHVRDLVGINHVALGSDYDGATTVRFDTAQLVQVTQALIDAGFSDDEIRAAMGGNAIRVLKAGLVPLTPPAP
Sequences:
>Translated_393_residues MRRWLIALLIVVALAALAFFTLAPGMIERDLNRIDGKPLPQVTARAEALHQTLTIVDLHSDSLLWSRDFLDRAERGHMDL PRLKDGHVALQVLASTTKSPKGQNYHANGADSDNITGLVIAQLQPVRTWTSLLERSLWHAEKLHRAAAASNGTLKPVATT ADLDALLAARRGKPLTTGALLSVEGLHNLEGDIANLDKLYAAGFRMAGLTHFFDNELAGSMHGLKKGGLTPLGRQVVTAM EAKGMIVDIAHCSEACVADILKMARRPVVSSHGGVQATCKVNRNLSDAQIRGVAATGGLVGIGYWDAAVCDTSPASIARA MKHVRDLVGINHVALGSDYDGATTVRFDTAQLVQVTQALIDAGFSDDEIRAAMGGNAIRVLKAGLVPLTPPAP >Mature_393_residues MRRWLIALLIVVALAALAFFTLAPGMIERDLNRIDGKPLPQVTARAEALHQTLTIVDLHSDSLLWSRDFLDRAERGHMDL PRLKDGHVALQVLASTTKSPKGQNYHANGADSDNITGLVIAQLQPVRTWTSLLERSLWHAEKLHRAAAASNGTLKPVATT ADLDALLAARRGKPLTTGALLSVEGLHNLEGDIANLDKLYAAGFRMAGLTHFFDNELAGSMHGLKKGGLTPLGRQVVTAM EAKGMIVDIAHCSEACVADILKMARRPVVSSHGGVQATCKVNRNLSDAQIRGVAATGGLVGIGYWDAAVCDTSPASIARA MKHVRDLVGINHVALGSDYDGATTVRFDTAQLVQVTQALIDAGFSDDEIRAAMGGNAIRVLKAGLVPLTPPAP
Specific function: Unknown
COG id: COG2355
COG function: function code E; Zn-dependent dipeptidase, microsomal dipeptidase homolog
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M19 family [H]
Homologues:
Organism=Homo sapiens, GI189458885, Length=346, Percent_Identity=27.7456647398844, Blast_Score=115, Evalue=9e-26, Organism=Homo sapiens, GI4758190, Length=346, Percent_Identity=27.7456647398844, Blast_Score=115, Evalue=9e-26, Organism=Homo sapiens, GI11641269, Length=218, Percent_Identity=28.8990825688073, Blast_Score=101, Evalue=1e-21, Organism=Homo sapiens, GI193211608, Length=361, Percent_Identity=23.8227146814404, Blast_Score=91, Evalue=2e-18, Organism=Homo sapiens, GI193211610, Length=361, Percent_Identity=24.0997229916898, Blast_Score=88, Evalue=1e-17, Organism=Drosophila melanogaster, GI161083233, Length=406, Percent_Identity=27.3399014778325, Blast_Score=122, Evalue=4e-28, Organism=Drosophila melanogaster, GI221475880, Length=323, Percent_Identity=26.625386996904, Blast_Score=115, Evalue=6e-26, Organism=Drosophila melanogaster, GI281362638, Length=319, Percent_Identity=27.5862068965517, Blast_Score=102, Evalue=3e-22, Organism=Drosophila melanogaster, GI281362636, Length=319, Percent_Identity=27.5862068965517, Blast_Score=102, Evalue=3e-22,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008257 [H]
Pfam domain/function: PF01244 Peptidase_M19 [H]
EC number: NA
Molecular weight: Translated: 41815; Mature: 41815
Theoretical pI: Translated: 8.36; Mature: 8.36
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRRWLIALLIVVALAALAFFTLAPGMIERDLNRIDGKPLPQVTARAEALHQTLTIVDLHS CHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHEEEEEECC DSLLWSRDFLDRAERGHMDLPRLKDGHVALQVLASTTKSPKGQNYHANGADSDNITGLVI CCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEE AQLQPVRTWTSLLERSLWHAEKLHRAAAASNGTLKPVATTADLDALLAARRGKPLTTGAL ECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECHHHHHHHHHHHCCCCCCCCCE LSVEGLHNLEGDIANLDKLYAAGFRMAGLTHFFDNELAGSMHGLKKGGLTPLGRQVVTAM EEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH EAKGMIVDIAHCSEACVADILKMARRPVVSSHGGVQATCKVNRNLSDAQIRGVAATGGLV HHCCCEEEHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHEEEEEECCCEE GIGYWDAAVCDTSPASIARAMKHVRDLVGINHVALGSDYDGATTVRFDTAQLVQVTQALI EECCCCHHHCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCCCEEEEECHHHHHHHHHHHH DAGFSDDEIRAAMGGNAIRVLKAGLVPLTPPAP HCCCCCHHHHHHHCCCEEEEHHCCCCCCCCCCC >Mature Secondary Structure MRRWLIALLIVVALAALAFFTLAPGMIERDLNRIDGKPLPQVTARAEALHQTLTIVDLHS CHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHEEEEEECC DSLLWSRDFLDRAERGHMDLPRLKDGHVALQVLASTTKSPKGQNYHANGADSDNITGLVI CCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEE AQLQPVRTWTSLLERSLWHAEKLHRAAAASNGTLKPVATTADLDALLAARRGKPLTTGAL ECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECHHHHHHHHHHHCCCCCCCCCE LSVEGLHNLEGDIANLDKLYAAGFRMAGLTHFFDNELAGSMHGLKKGGLTPLGRQVVTAM EEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH EAKGMIVDIAHCSEACVADILKMARRPVVSSHGGVQATCKVNRNLSDAQIRGVAATGGLV HHCCCEEEHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHEEEEEECCCEE GIGYWDAAVCDTSPASIARAMKHVRDLVGINHVALGSDYDGATTVRFDTAQLVQVTQALI EECCCCHHHCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCCCEEEEECHHHHHHHHHHHH DAGFSDDEIRAAMGGNAIRVLKAGLVPLTPPAP HCCCCCHHHHHHHCCCEEEEHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1313537 [H]