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The map label for this gene is cspA [H]

Identifier: 103487825

GI number: 103487825

Start: 2471222

End: 2471971

Strand: Direct

Name: cspA [H]

Synonym: Sala_2344

Alternate gene names: 103487825

Gene position: 2471222-2471971 (Clockwise)

Preceding gene: 103487811

Following gene: 103487832

Centisome position: 73.87

GC content: 68.13

Gene sequence:

>750_bases
ATGAGTTTCAATAAGGATCGCCGTGGCCATCGGGGACGCGGCAAGCGCGATGATTTCGGCAATTTCGACAGCTTCGAACC
GGCCCCCTATGGCGGCGACTCCTACGGCGGCGGGCGTGGCGGTTTCGGTGATCGTGACCGCGGCGGTTTCGCTGGCGGCG
ACCGGGGCGGTGGCTTCGGCGGCGGCGACCGTGGCGGCGGCTTCGGCGGTGGGCGTGGCGGCGGCATGCCGGCACAGGTC
GTCGGTGAAGGCCAGGGCACGGTCAAGTTCTTCAACCCGTCCAAGGGTTTCGGCTTCGTCGCCCGCGACGACGGTGGCGA
AGACGTCTTTGTCCATATCAGCGCGGTCGAACAGGCGGGGCTCCAGGGTCTCGCGTCGGGCCAGCCGCTCGCTTTCACGC
TCGTCGAGCGCAACGGCAAGGTGTCGGCAATCGACCTCAAGATCGAGGGCGAACCGATGCCGGTCGAAGAGTTCGCCCCG
CGTCAGCGTGAGGATCGCCCGGGCGGCGCCCGCGGGCGGCGCCAGTTGACCGGCGAACGCACGTCGGGCACGGTGAAGTT
CTTCAACACGACCAAGGGCTTCGGCTTCATCGCGCGCGACGATGGCCAGGCCGACGCCTTCGTCCACATCAGCGCGGTGC
AGCGCGCGGGCATGGCGGGCCTTGAAGAGGGCGACCGCGTCGCCTTCGACATCGAAGTCGATGATCGCGGCAAGTTCGCC
GCGGTGAACCTGCAGCCGCATCAGGACTGA

Upstream 100 bases:

>100_bases
GTGGCATGGGGCGAGTCTGTGCCCGTGGTGAACTGCGTCCCCGTCCGGCGCAAGGAGCCGGTTGAATGGGGTATGGACGA
CCGAAAGCGACTACTAAGCA

Downstream 100 bases:

>100_bases
TCGGCGGCACGACCGGACACGAAAAGGGCGGCCCCGGGGCCGCCCTTTTTTCAGGATGCATCGCCGCGCACCGCGGCTGG
CCCGACGCTGGCGCCCTCAC

Product: cold-shock DNA-binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 249; Mature: 248

Protein sequence:

>249_residues
MSFNKDRRGHRGRGKRDDFGNFDSFEPAPYGGDSYGGGRGGFGDRDRGGFAGGDRGGGFGGGDRGGGFGGGRGGGMPAQV
VGEGQGTVKFFNPSKGFGFVARDDGGEDVFVHISAVEQAGLQGLASGQPLAFTLVERNGKVSAIDLKIEGEPMPVEEFAP
RQREDRPGGARGRRQLTGERTSGTVKFFNTTKGFGFIARDDGQADAFVHISAVQRAGMAGLEEGDRVAFDIEVDDRGKFA
AVNLQPHQD

Sequences:

>Translated_249_residues
MSFNKDRRGHRGRGKRDDFGNFDSFEPAPYGGDSYGGGRGGFGDRDRGGFAGGDRGGGFGGGDRGGGFGGGRGGGMPAQV
VGEGQGTVKFFNPSKGFGFVARDDGGEDVFVHISAVEQAGLQGLASGQPLAFTLVERNGKVSAIDLKIEGEPMPVEEFAP
RQREDRPGGARGRRQLTGERTSGTVKFFNTTKGFGFIARDDGQADAFVHISAVQRAGMAGLEEGDRVAFDIEVDDRGKFA
AVNLQPHQD
>Mature_248_residues
SFNKDRRGHRGRGKRDDFGNFDSFEPAPYGGDSYGGGRGGFGDRDRGGFAGGDRGGGFGGGDRGGGFGGGRGGGMPAQVV
GEGQGTVKFFNPSKGFGFVARDDGGEDVFVHISAVEQAGLQGLASGQPLAFTLVERNGKVSAIDLKIEGEPMPVEEFAPR
QREDRPGGARGRRQLTGERTSGTVKFFNTTKGFGFIARDDGQADAFVHISAVQRAGMAGLEEGDRVAFDIEVDDRGKFAA
VNLQPHQD

Specific function: Binds To And Stimulates The Transcription Of The CCAAT- Containing, Cold-Shock-Inducible Promoters Of The H-Ns And Gyra Proteins. Binds Also To The Inverted Repeat 5'-ATTGG-3'. [C]

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1789979, Length=53, Percent_Identity=54.7169811320755, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI1786841, Length=62, Percent_Identity=50, Blast_Score=61, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 26184; Mature: 26053

Theoretical pI: Translated: 6.15; Mature: 6.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFNKDRRGHRGRGKRDDFGNFDSFEPAPYGGDSYGGGRGGFGDRDRGGFAGGDRGGGFG
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
GGDRGGGFGGGRGGGMPAQVVGEGQGTVKFFNPSKGFGFVARDDGGEDVFVHISAVEQAG
CCCCCCCCCCCCCCCCCEEEEECCCCEEEEECCCCCCEEEEECCCCCEEEEEEEEHHHHC
LQGLASGQPLAFTLVERNGKVSAIDLKIEGEPMPVEEFAPRQREDRPGGARGRRQLTGER
HHHCCCCCCEEEEEEECCCCEEEEEEEECCCCCCHHHHCCCCCCCCCCCCCCCHHCCCCC
TSGTVKFFNTTKGFGFIARDDGQADAFVHISAVQRAGMAGLEEGDRVAFDIEVDDRGKFA
CCCEEEEEECCCCCEEEECCCCCCCEEEEEEHHHHCCCCCCCCCCEEEEEEEECCCCCEE
AVNLQPHQD
EEECCCCCC
>Mature Secondary Structure 
SFNKDRRGHRGRGKRDDFGNFDSFEPAPYGGDSYGGGRGGFGDRDRGGFAGGDRGGGFG
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
GGDRGGGFGGGRGGGMPAQVVGEGQGTVKFFNPSKGFGFVARDDGGEDVFVHISAVEQAG
CCCCCCCCCCCCCCCCCEEEEECCCCEEEEECCCCCCEEEEECCCCCEEEEEEEEHHHHC
LQGLASGQPLAFTLVERNGKVSAIDLKIEGEPMPVEEFAPRQREDRPGGARGRRQLTGER
HHHCCCCCCEEEEEEECCCCEEEEEEEECCCCCCHHHHCCCCCCCCCCCCCCCHHCCCCC
TSGTVKFFNTTKGFGFIARDDGQADAFVHISAVQRAGMAGLEEGDRVAFDIEVDDRGKFA
CCCEEEEEECCCCCEEEECCCCCCCEEEEEEHHHHCCCCCCCCCCEEEEEEEECCCCCEE
AVNLQPHQD
EEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA