| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is yfeW [C]
Identifier: 103487746
GI number: 103487746
Start: 2383469
End: 2384755
Strand: Reverse
Name: yfeW [C]
Synonym: Sala_2265
Alternate gene names: 103487746
Gene position: 2384755-2383469 (Counterclockwise)
Preceding gene: 103487747
Following gene: 103487745
Centisome position: 71.29
GC content: 68.61
Gene sequence:
>1287_bases ATGAACATGATGGTGACGCGCCGCGCGTTGATGGGCGGCATGGCGCTCGGTGGCGCCGCGGCGCTGCTGCCGCGCGCCGC CTGGGCGTGGCGCGCCGAGGGCGAGGCGCTTTATCCTGCGACGAGCGCCTTCATCCGGAGCTTCGTCGAGCGCCGCGAAC TCACCGGGACGCTCGCCGCGATCGGCAAGGGGCAGGAAGCGCCAGTTTTCATCGGCGCGGGGATTCAGTCGAACGGCACG CCGACGCCGGTCGGCCCCGACACGATCTGGCGCCTCTATTCGATGACCAAGCCGGTGACGGGCATCGCCGCGATGCTGCT GATCGAGGATGGCAAGATGCGGCTCGACCAGCCGATCGCCGATTTCCTGCCCGCCTTTGCCAATATGAAGGTGCAGAACA CCCCGGATGGATCGCTCACCGACGTGCGCCCCGCCAAAGGCCCGATCACGGTGCGCCAATTGCTGACCCACACCGCGGGG CTGGGCTATAACATCATCCAGAAGGGGCCGATCAAAAAGGCCTATGACGATGCGGGCATCGTCGGCGGGCAGGCGAGCCG CCTGCCGATCCCCGGCCTGGCGCCCGTAACCCCCGCGCCCAGCCTGGCGGCGATGGCCGACCGGCTGGCCGAGCTGCCGC TCGTCTATGAGCCGGGGACCAAGTGGAGCTATTCGATCAGCCTCGACCTGATGGGGCGGTTGATCGAGGTCGTGTCGGGG CAGGCGTTCGATGCCTTTCTGAAGGCGCGGCTGTTCGACCCGCTCGGCATGACGAGCACGGGGTTCATGGTCGCGGCGAA GGACGTGCCGCGCTTCACGAGCAATTACGCGCCGTTCGGCGGCGCGCTCATCCCCTTCGATCCCGCGCCCAGTTCGATCT ATCTCGACCCGCCGCCCTATCCGTTCGGCGGCGGCGGGCTGGTGTCGAGCGCGCGCGACTATGACCGATTCCTCGCGATG CTGCTGGGCGAGGGCGAAACCGGCGGGGTGCGCGTGATGGCGGCGGACACCGCGCGGCTCGCCATGTCGAACCTGCTCGA CGACAGCGTCGATCGCAAGGGGACGTTCATCGACGGGCAGGGCTTTGGCGCGGGCGGGCGCGTGTCGCTGCCGTCCTCGC CGGGAGGCGAGGGGATTTTCGGCTGGGCGGGCGCGGCGGGGACGATCGGCTTCGTCCACCGGCGGCTCGGTTATCGCGCC GCCGGCTATACGCAGATCATGCCACCCGATGCAGTGCCCTTTCAGGCGAAGTTCGGCGAGACTTTCTTTCGCGACGTGAC CGCCTGA
Upstream 100 bases:
>100_bases CCGCAGCGGAAGGCATCTGGTGGCCGATCTCGGACCTTGACGCCGCGGGGCTGCCGACGCTCTATCGCAAGCTGGTGGTC AAGATGCTGGAGAGAGACGC
Downstream 100 bases:
>100_bases TGCCGCTGCCGCTCGGCTTCACCGGCGCGCGGCTCGACCGCGCCGACCAGCTTCGCACCAATGAAGCCGCCTTTGCCGCG GCGCTCGCCGATCCGCGCGC
Product: twin-arginine translocation pathway signal
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 428; Mature: 428
Protein sequence:
>428_residues MNMMVTRRALMGGMALGGAAALLPRAAWAWRAEGEALYPATSAFIRSFVERRELTGTLAAIGKGQEAPVFIGAGIQSNGT PTPVGPDTIWRLYSMTKPVTGIAAMLLIEDGKMRLDQPIADFLPAFANMKVQNTPDGSLTDVRPAKGPITVRQLLTHTAG LGYNIIQKGPIKKAYDDAGIVGGQASRLPIPGLAPVTPAPSLAAMADRLAELPLVYEPGTKWSYSISLDLMGRLIEVVSG QAFDAFLKARLFDPLGMTSTGFMVAAKDVPRFTSNYAPFGGALIPFDPAPSSIYLDPPPYPFGGGGLVSSARDYDRFLAM LLGEGETGGVRVMAADTARLAMSNLLDDSVDRKGTFIDGQGFGAGGRVSLPSSPGGEGIFGWAGAAGTIGFVHRRLGYRA AGYTQIMPPDAVPFQAKFGETFFRDVTA
Sequences:
>Translated_428_residues MNMMVTRRALMGGMALGGAAALLPRAAWAWRAEGEALYPATSAFIRSFVERRELTGTLAAIGKGQEAPVFIGAGIQSNGT PTPVGPDTIWRLYSMTKPVTGIAAMLLIEDGKMRLDQPIADFLPAFANMKVQNTPDGSLTDVRPAKGPITVRQLLTHTAG LGYNIIQKGPIKKAYDDAGIVGGQASRLPIPGLAPVTPAPSLAAMADRLAELPLVYEPGTKWSYSISLDLMGRLIEVVSG QAFDAFLKARLFDPLGMTSTGFMVAAKDVPRFTSNYAPFGGALIPFDPAPSSIYLDPPPYPFGGGGLVSSARDYDRFLAM LLGEGETGGVRVMAADTARLAMSNLLDDSVDRKGTFIDGQGFGAGGRVSLPSSPGGEGIFGWAGAAGTIGFVHRRLGYRA AGYTQIMPPDAVPFQAKFGETFFRDVTA >Mature_428_residues MNMMVTRRALMGGMALGGAAALLPRAAWAWRAEGEALYPATSAFIRSFVERRELTGTLAAIGKGQEAPVFIGAGIQSNGT PTPVGPDTIWRLYSMTKPVTGIAAMLLIEDGKMRLDQPIADFLPAFANMKVQNTPDGSLTDVRPAKGPITVRQLLTHTAG LGYNIIQKGPIKKAYDDAGIVGGQASRLPIPGLAPVTPAPSLAAMADRLAELPLVYEPGTKWSYSISLDLMGRLIEVVSG QAFDAFLKARLFDPLGMTSTGFMVAAKDVPRFTSNYAPFGGALIPFDPAPSSIYLDPPPYPFGGGGLVSSARDYDRFLAM LLGEGETGGVRVMAADTARLAMSNLLDDSVDRKGTFIDGQGFGAGGRVSLPSSPGGEGIFGWAGAAGTIGFVHRRLGYRA AGYTQIMPPDAVPFQAKFGETFFRDVTA
Specific function: Unknown
COG id: COG1680
COG function: function code V; Beta-lactamase class C and other penicillin binding proteins
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI87082101, Length=334, Percent_Identity=24.251497005988, Blast_Score=70, Evalue=2e-13, Organism=Caenorhabditis elegans, GI115533026, Length=315, Percent_Identity=28.2539682539683, Blast_Score=86, Evalue=3e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR001466 [H]
Pfam domain/function: PF00144 Beta-lactamase [H]
EC number: NA
Molecular weight: Translated: 45143; Mature: 45143
Theoretical pI: Translated: 9.07; Mature: 9.07
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 4.0 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNMMVTRRALMGGMALGGAAALLPRAAWAWRAEGEALYPATSAFIRSFVERRELTGTLAA CCCHHHHHHHHCCHHHCHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHHHHHHHHHHHH IGKGQEAPVFIGAGIQSNGTPTPVGPDTIWRLYSMTKPVTGIAAMLLIEDGKMRLDQPIA HCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHCCCHHHHEEEEEEECCCCCCCCCHH DFLPAFANMKVQNTPDGSLTDVRPAKGPITVRQLLTHTAGLGYNIIQKGPIKKAYDDAGI HHHHHHHCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHCCCCCCHHHCCCCC VGGQASRLPIPGLAPVTPAPSLAAMADRLAELPLVYEPGTKWSYSISLDLMGRLIEVVSG CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEECCCCCEEEEEEHHHHHHHHHHHCC QAFDAFLKARLFDPLGMTSTGFMVAAKDVPRFTSNYAPFGGALIPFDPAPSSIYLDPPPY CHHHHHHHHHHCCCCCCCCCCCEEEECCCCHHHCCCCCCCCEEEECCCCCCEEEECCCCC PFGGGGLVSSARDYDRFLAMLLGEGETGGVRVMAADTARLAMSNLLDDSVDRKGTFIDGQ CCCCCCHHCCHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHCCCCCCCEECCC GFGAGGRVSLPSSPGGEGIFGWAGAAGTIGFVHRRLGYRAAGYTQIMPPDAVPFQAKFGE CCCCCCEEECCCCCCCCCEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHH TFFRDVTA HHHHHCCC >Mature Secondary Structure MNMMVTRRALMGGMALGGAAALLPRAAWAWRAEGEALYPATSAFIRSFVERRELTGTLAA CCCHHHHHHHHCCHHHCHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHHHHHHHHHHHH IGKGQEAPVFIGAGIQSNGTPTPVGPDTIWRLYSMTKPVTGIAAMLLIEDGKMRLDQPIA HCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHCCCHHHHEEEEEEECCCCCCCCCHH DFLPAFANMKVQNTPDGSLTDVRPAKGPITVRQLLTHTAGLGYNIIQKGPIKKAYDDAGI HHHHHHHCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHCCCCCCHHHCCCCC VGGQASRLPIPGLAPVTPAPSLAAMADRLAELPLVYEPGTKWSYSISLDLMGRLIEVVSG CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEECCCCCEEEEEEHHHHHHHHHHHCC QAFDAFLKARLFDPLGMTSTGFMVAAKDVPRFTSNYAPFGGALIPFDPAPSSIYLDPPPY CHHHHHHHHHHCCCCCCCCCCCEEEECCCCHHHCCCCCCCCEEEECCCCCCEEEECCCCC PFGGGGLVSSARDYDRFLAMLLGEGETGGVRVMAADTARLAMSNLLDDSVDRKGTFIDGQ CCCCCCHHCCHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHCCCCCCCEECCC GFGAGGRVSLPSSPGGEGIFGWAGAAGTIGFVHRRLGYRAAGYTQIMPPDAVPFQAKFGE CCCCCCEEECCCCCCCCCEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHH TFFRDVTA HHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]