Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

Click here to switch to the map view.

The map label for this gene is yfeW [C]

Identifier: 103487746

GI number: 103487746

Start: 2383469

End: 2384755

Strand: Reverse

Name: yfeW [C]

Synonym: Sala_2265

Alternate gene names: 103487746

Gene position: 2384755-2383469 (Counterclockwise)

Preceding gene: 103487747

Following gene: 103487745

Centisome position: 71.29

GC content: 68.61

Gene sequence:

>1287_bases
ATGAACATGATGGTGACGCGCCGCGCGTTGATGGGCGGCATGGCGCTCGGTGGCGCCGCGGCGCTGCTGCCGCGCGCCGC
CTGGGCGTGGCGCGCCGAGGGCGAGGCGCTTTATCCTGCGACGAGCGCCTTCATCCGGAGCTTCGTCGAGCGCCGCGAAC
TCACCGGGACGCTCGCCGCGATCGGCAAGGGGCAGGAAGCGCCAGTTTTCATCGGCGCGGGGATTCAGTCGAACGGCACG
CCGACGCCGGTCGGCCCCGACACGATCTGGCGCCTCTATTCGATGACCAAGCCGGTGACGGGCATCGCCGCGATGCTGCT
GATCGAGGATGGCAAGATGCGGCTCGACCAGCCGATCGCCGATTTCCTGCCCGCCTTTGCCAATATGAAGGTGCAGAACA
CCCCGGATGGATCGCTCACCGACGTGCGCCCCGCCAAAGGCCCGATCACGGTGCGCCAATTGCTGACCCACACCGCGGGG
CTGGGCTATAACATCATCCAGAAGGGGCCGATCAAAAAGGCCTATGACGATGCGGGCATCGTCGGCGGGCAGGCGAGCCG
CCTGCCGATCCCCGGCCTGGCGCCCGTAACCCCCGCGCCCAGCCTGGCGGCGATGGCCGACCGGCTGGCCGAGCTGCCGC
TCGTCTATGAGCCGGGGACCAAGTGGAGCTATTCGATCAGCCTCGACCTGATGGGGCGGTTGATCGAGGTCGTGTCGGGG
CAGGCGTTCGATGCCTTTCTGAAGGCGCGGCTGTTCGACCCGCTCGGCATGACGAGCACGGGGTTCATGGTCGCGGCGAA
GGACGTGCCGCGCTTCACGAGCAATTACGCGCCGTTCGGCGGCGCGCTCATCCCCTTCGATCCCGCGCCCAGTTCGATCT
ATCTCGACCCGCCGCCCTATCCGTTCGGCGGCGGCGGGCTGGTGTCGAGCGCGCGCGACTATGACCGATTCCTCGCGATG
CTGCTGGGCGAGGGCGAAACCGGCGGGGTGCGCGTGATGGCGGCGGACACCGCGCGGCTCGCCATGTCGAACCTGCTCGA
CGACAGCGTCGATCGCAAGGGGACGTTCATCGACGGGCAGGGCTTTGGCGCGGGCGGGCGCGTGTCGCTGCCGTCCTCGC
CGGGAGGCGAGGGGATTTTCGGCTGGGCGGGCGCGGCGGGGACGATCGGCTTCGTCCACCGGCGGCTCGGTTATCGCGCC
GCCGGCTATACGCAGATCATGCCACCCGATGCAGTGCCCTTTCAGGCGAAGTTCGGCGAGACTTTCTTTCGCGACGTGAC
CGCCTGA

Upstream 100 bases:

>100_bases
CCGCAGCGGAAGGCATCTGGTGGCCGATCTCGGACCTTGACGCCGCGGGGCTGCCGACGCTCTATCGCAAGCTGGTGGTC
AAGATGCTGGAGAGAGACGC

Downstream 100 bases:

>100_bases
TGCCGCTGCCGCTCGGCTTCACCGGCGCGCGGCTCGACCGCGCCGACCAGCTTCGCACCAATGAAGCCGCCTTTGCCGCG
GCGCTCGCCGATCCGCGCGC

Product: twin-arginine translocation pathway signal

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 428; Mature: 428

Protein sequence:

>428_residues
MNMMVTRRALMGGMALGGAAALLPRAAWAWRAEGEALYPATSAFIRSFVERRELTGTLAAIGKGQEAPVFIGAGIQSNGT
PTPVGPDTIWRLYSMTKPVTGIAAMLLIEDGKMRLDQPIADFLPAFANMKVQNTPDGSLTDVRPAKGPITVRQLLTHTAG
LGYNIIQKGPIKKAYDDAGIVGGQASRLPIPGLAPVTPAPSLAAMADRLAELPLVYEPGTKWSYSISLDLMGRLIEVVSG
QAFDAFLKARLFDPLGMTSTGFMVAAKDVPRFTSNYAPFGGALIPFDPAPSSIYLDPPPYPFGGGGLVSSARDYDRFLAM
LLGEGETGGVRVMAADTARLAMSNLLDDSVDRKGTFIDGQGFGAGGRVSLPSSPGGEGIFGWAGAAGTIGFVHRRLGYRA
AGYTQIMPPDAVPFQAKFGETFFRDVTA

Sequences:

>Translated_428_residues
MNMMVTRRALMGGMALGGAAALLPRAAWAWRAEGEALYPATSAFIRSFVERRELTGTLAAIGKGQEAPVFIGAGIQSNGT
PTPVGPDTIWRLYSMTKPVTGIAAMLLIEDGKMRLDQPIADFLPAFANMKVQNTPDGSLTDVRPAKGPITVRQLLTHTAG
LGYNIIQKGPIKKAYDDAGIVGGQASRLPIPGLAPVTPAPSLAAMADRLAELPLVYEPGTKWSYSISLDLMGRLIEVVSG
QAFDAFLKARLFDPLGMTSTGFMVAAKDVPRFTSNYAPFGGALIPFDPAPSSIYLDPPPYPFGGGGLVSSARDYDRFLAM
LLGEGETGGVRVMAADTARLAMSNLLDDSVDRKGTFIDGQGFGAGGRVSLPSSPGGEGIFGWAGAAGTIGFVHRRLGYRA
AGYTQIMPPDAVPFQAKFGETFFRDVTA
>Mature_428_residues
MNMMVTRRALMGGMALGGAAALLPRAAWAWRAEGEALYPATSAFIRSFVERRELTGTLAAIGKGQEAPVFIGAGIQSNGT
PTPVGPDTIWRLYSMTKPVTGIAAMLLIEDGKMRLDQPIADFLPAFANMKVQNTPDGSLTDVRPAKGPITVRQLLTHTAG
LGYNIIQKGPIKKAYDDAGIVGGQASRLPIPGLAPVTPAPSLAAMADRLAELPLVYEPGTKWSYSISLDLMGRLIEVVSG
QAFDAFLKARLFDPLGMTSTGFMVAAKDVPRFTSNYAPFGGALIPFDPAPSSIYLDPPPYPFGGGGLVSSARDYDRFLAM
LLGEGETGGVRVMAADTARLAMSNLLDDSVDRKGTFIDGQGFGAGGRVSLPSSPGGEGIFGWAGAAGTIGFVHRRLGYRA
AGYTQIMPPDAVPFQAKFGETFFRDVTA

Specific function: Unknown

COG id: COG1680

COG function: function code V; Beta-lactamase class C and other penicillin binding proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082101, Length=334, Percent_Identity=24.251497005988, Blast_Score=70, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI115533026, Length=315, Percent_Identity=28.2539682539683, Blast_Score=86, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012338
- InterPro:   IPR001466 [H]

Pfam domain/function: PF00144 Beta-lactamase [H]

EC number: NA

Molecular weight: Translated: 45143; Mature: 45143

Theoretical pI: Translated: 9.07; Mature: 9.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNMMVTRRALMGGMALGGAAALLPRAAWAWRAEGEALYPATSAFIRSFVERRELTGTLAA
CCCHHHHHHHHCCHHHCHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHHHHHHHHHHHH
IGKGQEAPVFIGAGIQSNGTPTPVGPDTIWRLYSMTKPVTGIAAMLLIEDGKMRLDQPIA
HCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHCCCHHHHEEEEEEECCCCCCCCCHH
DFLPAFANMKVQNTPDGSLTDVRPAKGPITVRQLLTHTAGLGYNIIQKGPIKKAYDDAGI
HHHHHHHCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHCCCCCCHHHCCCCC
VGGQASRLPIPGLAPVTPAPSLAAMADRLAELPLVYEPGTKWSYSISLDLMGRLIEVVSG
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEECCCCCEEEEEEHHHHHHHHHHHCC
QAFDAFLKARLFDPLGMTSTGFMVAAKDVPRFTSNYAPFGGALIPFDPAPSSIYLDPPPY
CHHHHHHHHHHCCCCCCCCCCCEEEECCCCHHHCCCCCCCCEEEECCCCCCEEEECCCCC
PFGGGGLVSSARDYDRFLAMLLGEGETGGVRVMAADTARLAMSNLLDDSVDRKGTFIDGQ
CCCCCCHHCCHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHCCCCCCCEECCC
GFGAGGRVSLPSSPGGEGIFGWAGAAGTIGFVHRRLGYRAAGYTQIMPPDAVPFQAKFGE
CCCCCCEEECCCCCCCCCEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHH
TFFRDVTA
HHHHHCCC
>Mature Secondary Structure
MNMMVTRRALMGGMALGGAAALLPRAAWAWRAEGEALYPATSAFIRSFVERRELTGTLAA
CCCHHHHHHHHCCHHHCHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHHHHHHHHHHHH
IGKGQEAPVFIGAGIQSNGTPTPVGPDTIWRLYSMTKPVTGIAAMLLIEDGKMRLDQPIA
HCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHCCCHHHHEEEEEEECCCCCCCCCHH
DFLPAFANMKVQNTPDGSLTDVRPAKGPITVRQLLTHTAGLGYNIIQKGPIKKAYDDAGI
HHHHHHHCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHCCCCCCHHHCCCCC
VGGQASRLPIPGLAPVTPAPSLAAMADRLAELPLVYEPGTKWSYSISLDLMGRLIEVVSG
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEECCCCCEEEEEEHHHHHHHHHHHCC
QAFDAFLKARLFDPLGMTSTGFMVAAKDVPRFTSNYAPFGGALIPFDPAPSSIYLDPPPY
CHHHHHHHHHHCCCCCCCCCCCEEEECCCCHHHCCCCCCCCEEEECCCCCCEEEECCCCC
PFGGGGLVSSARDYDRFLAMLLGEGETGGVRVMAADTARLAMSNLLDDSVDRKGTFIDGQ
CCCCCCHHCCHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHCCCCCCCEECCC
GFGAGGRVSLPSSPGGEGIFGWAGAAGTIGFVHRRLGYRAAGYTQIMPPDAVPFQAKFGE
CCCCCCEEECCCCCCCCCEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHH
TFFRDVTA
HHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]