| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487727
Identifier: 103487727
GI number: 103487727
Start: 2358444
End: 2359484
Strand: Direct
Name: 103487727
Synonym: Sala_2246
Alternate gene names: NA
Gene position: 2358444-2359484 (Clockwise)
Preceding gene: 103487726
Following gene: 103487731
Centisome position: 70.5
GC content: 70.32
Gene sequence:
>1041_bases TTGAGTTTTCCGACCGCGCCCGGCGCGATGACGCCCGACTGGCTCGGCGCGGTGCTGGGGCATCCCGGCCAGCTCCGGGG CTTTACCGCGGCCAAGGTCGGCACGGGGCAGATGTGCGACAGCTTCCGCCTGACGCTCGACTGGGCGGACGATGTGCGCG GCCCGACGAGCGTAATCGCCAAATGTCCGAGCCACGACGAAGCGAGCCGCCATATCGCGCGGCTGACCGGCACCTATGTC AAGGAAGTCAGCTGGTATCGCGAACTCGCGGCGGACAGCGGTGTCGCGGCGCCGCAGTGCCATCATGCCGAAATTGCGGG CGATGGTGTCGATTTCATCCTCATCCTCGCCGATCTCGCGCCCGCCCGGCAGGGCGATCAGCTCGCGGGTATCGACGCCG CCTGGCTCGTCCCCTGCATCGACGCGGCGGCGGCGCTGCACGCCCTGCTCTGGAACGACCCGCGGCTGGGCACGCTGCCC TGGCTCGCGCGCGACAATGGCGATGTGGTGCGCGCGCTGTTCCCGCAGCTCTATGCCGGGTTTCGCGAACGCTATGCGGC GCGGCTCGCGTCCGAGGTGCTGGACCTCGGCGCCGGAATCGTCCAGCGGCTCGACTGCTATCTCGCGCGCGAACCCGCCG CGCGCACGATCGTCCACGGCGACCTGCGCATCGACAATATCCTGTTCGCGCCGGACGGCCAGGCCTGCTGGCTCGTCGAC TGGCAGACGCTGGGGCGCGGCAGCGGCGCCGCCGACCTGGCCTATCTCGTCGGCACCAGCATCGCCGATCCGGCCGAGCG CGCCGCCGCCGACCGGCCGGCGTTCGACCAGTGGATCGCCGCGCTTCGGGCGCGCGGCATAGCGCCCGATCCTGATGCGT TATGGACCGATTATCGCGTCGGCGCGCTCAGCGGCTATTTCATGGCGGTCTTCGCCTCGATGAGCGTCGAGCGCACGCCG CGCGGCGACGAAATGTTCGCGCTGATGGCCGAACGCCCCGCGCGCCAGGCGCTCGACCTCGGCAGTCTCGACCTGCTTTA G
Upstream 100 bases:
>100_bases CCGATGGCGGCACGCTCCACCGCGGCGTCGGCGTGCTCGAACAATTGTTCGTCGGGCCGCACGCGCCGACCGGCCTGTCG GGGCTGATGGACCCCGCGCC
Downstream 100 bases:
>100_bases AGCCGATGACCTGCTGGAGCGGCGTGCGGCCGCGAAATCTGTCGCGAACCCCGCCATCAGGCCGCGGCCGACGCTCGCCG AATCGGCGTCGAAGAGCCCG
Product: hypothetical protein
Products: NA
Alternate protein names: Phosphotransferase Family Protein; Conserved Domain Protein; Protein Kinase-Like Protein
Number of amino acids: Translated: 346; Mature: 345
Protein sequence:
>346_residues MSFPTAPGAMTPDWLGAVLGHPGQLRGFTAAKVGTGQMCDSFRLTLDWADDVRGPTSVIAKCPSHDEASRHIARLTGTYV KEVSWYRELAADSGVAAPQCHHAEIAGDGVDFILILADLAPARQGDQLAGIDAAWLVPCIDAAAALHALLWNDPRLGTLP WLARDNGDVVRALFPQLYAGFRERYAARLASEVLDLGAGIVQRLDCYLAREPAARTIVHGDLRIDNILFAPDGQACWLVD WQTLGRGSGAADLAYLVGTSIADPAERAAADRPAFDQWIAALRARGIAPDPDALWTDYRVGALSGYFMAVFASMSVERTP RGDEMFALMAERPARQALDLGSLDLL
Sequences:
>Translated_346_residues MSFPTAPGAMTPDWLGAVLGHPGQLRGFTAAKVGTGQMCDSFRLTLDWADDVRGPTSVIAKCPSHDEASRHIARLTGTYV KEVSWYRELAADSGVAAPQCHHAEIAGDGVDFILILADLAPARQGDQLAGIDAAWLVPCIDAAAALHALLWNDPRLGTLP WLARDNGDVVRALFPQLYAGFRERYAARLASEVLDLGAGIVQRLDCYLAREPAARTIVHGDLRIDNILFAPDGQACWLVD WQTLGRGSGAADLAYLVGTSIADPAERAAADRPAFDQWIAALRARGIAPDPDALWTDYRVGALSGYFMAVFASMSVERTP RGDEMFALMAERPARQALDLGSLDLL >Mature_345_residues SFPTAPGAMTPDWLGAVLGHPGQLRGFTAAKVGTGQMCDSFRLTLDWADDVRGPTSVIAKCPSHDEASRHIARLTGTYVK EVSWYRELAADSGVAAPQCHHAEIAGDGVDFILILADLAPARQGDQLAGIDAAWLVPCIDAAAALHALLWNDPRLGTLPW LARDNGDVVRALFPQLYAGFRERYAARLASEVLDLGAGIVQRLDCYLAREPAARTIVHGDLRIDNILFAPDGQACWLVDW QTLGRGSGAADLAYLVGTSIADPAERAAADRPAFDQWIAALRARGIAPDPDALWTDYRVGALSGYFMAVFASMSVERTPR GDEMFALMAERPARQALDLGSLDLL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37235; Mature: 37103
Theoretical pI: Translated: 4.74; Mature: 4.74
Prosite motif: PS00109 PROTEIN_KINASE_TYR
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSFPTAPGAMTPDWLGAVLGHPGQLRGFTAAKVGTGQMCDSFRLTLDWADDVRGPTSVIA CCCCCCCCCCCHHHHHHHHCCCCCCCCEEEECCCCCCCCCCEEEEEECHHCCCCHHHHHH KCPSHDEASRHIARLTGTYVKEVSWYRELAADSGVAAPQCHHAEIAGDGVDFILILADLA CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCCCEEHHHHHHC PARQGDQLAGIDAAWLVPCIDAAAALHALLWNDPRLGTLPWLARDNGDVVRALFPQLYAG CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHHHH FRERYAARLASEVLDLGAGIVQRLDCYLAREPAARTIVHGDLRIDNILFAPDGQACWLVD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEEECCEEEEEEEECCCCCEEEEEE WQTLGRGSGAADLAYLVGTSIADPAERAAADRPAFDQWIAALRARGIAPDPDALWTDYRV HHHHCCCCCHHHHHHHHHCCCCCHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCHHCCCHH GALSGYFMAVFASMSVERTPRGDEMFALMAERPARQALDLGSLDLL HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCHHHHHHCCCCCCCC >Mature Secondary Structure SFPTAPGAMTPDWLGAVLGHPGQLRGFTAAKVGTGQMCDSFRLTLDWADDVRGPTSVIA CCCCCCCCCCHHHHHHHHCCCCCCCCEEEECCCCCCCCCCEEEEEECHHCCCCHHHHHH KCPSHDEASRHIARLTGTYVKEVSWYRELAADSGVAAPQCHHAEIAGDGVDFILILADLA CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCCCEEHHHHHHC PARQGDQLAGIDAAWLVPCIDAAAALHALLWNDPRLGTLPWLARDNGDVVRALFPQLYAG CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHHHH FRERYAARLASEVLDLGAGIVQRLDCYLAREPAARTIVHGDLRIDNILFAPDGQACWLVD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEEECCEEEEEEEECCCCCEEEEEE WQTLGRGSGAADLAYLVGTSIADPAERAAADRPAFDQWIAALRARGIAPDPDALWTDYRV HHHHCCCCCHHHHHHHHHCCCCCHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCHHCCCHH GALSGYFMAVFASMSVERTPRGDEMFALMAERPARQALDLGSLDLL HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA