Click here to switch to the map view.

The map label for this gene is 103487707

Identifier: 103487707

GI number: 103487707

Start: 2337759

End: 2338118

Strand: Reverse

Name: 103487707

Synonym: Sala_2226

Alternate gene names: NA

Gene position: 2338118-2337759 (Counterclockwise)

Preceding gene: 103487708

Following gene: 103487706

Centisome position: 69.9

GC content: 53.61

Gene sequence:

>360_bases
GTGGAGAGCAATGACGGTGCAACCAAACCCCGGGTTCCTGCTTCCGCAGGAACATGGAAGTGCGATATGACTCGGCCGGG
CTATCTCTATCTGATGGCTAGTGCGCGGAACGGCACGTTATATCTTGGGGTTACCAGCGATCTGCTGGCGCGAGTGTGGC
AGCATCGCAATGAGGTGGTGGAAAGTTTCACCAAGAAATATGGCTGCCACACGCTGGTCTGGTACGAAGCGTTCGACGAT
ATTCAGCAAGCGCGTCAGCGCGAACTGCAAATGAAGAAATGGAAGCGGGCGTGGAAAATTGAACTGATCGAACGCGATAA
TCCGCAATGGCTGGATTTGTTCGACAGGCTATCCCTTTGA

Upstream 100 bases:

>100_bases
GAAGATCCGACGCGGTTGCTGATCGATTTGTAAGGCCAAGTGAACTGCTGCGCACGCAGGAGATATTCGAGCTGTTCTCC
TGCGAACGCAGGAGTCCAGG

Downstream 100 bases:

>100_bases
CGCCCTGGGTTCCTGCGTTCGCAGGAACGCATATGGAGTAAATCATGGCTGATTACGACTACGACGTCCTTGTCATTGGT
GCCGGTCCCGGCGGTTATGT

Product: excinuclease ABC subunit C

Products: NA

Alternate protein names: Excinuclease ABC C Subunit Domain Protein; Endonuclease; Endo/Excinuclease Amino Terminal Domain-Containing Protein; Excinuclease ABC Subunit C Domain-Containing Protein; Excinuclease ABC C Subunit; Excinuclease ABC C Subunit Domain-Containing Protein; Excinuclease ABC C Subunit-Like Protein; Endonuclease Containing A URI Domain; Endo/Excinuclease Amino Terminal Domain Protein; GIY-YIG Catalytic Domain-Containing Protein; Endonuclease Protein; Crossover Junction Endodeoxyribonuclease RuvC; Excinuclease ABC; Endo/Excinuclease; GIY-YIG Endonuclease Domain-Containing Protein; Excinuclease ABCsubunit C Domain-Containing Protein; Excinuclease ABC C Subunit N-Terminal; GIY-YIG Catalytic Domain Protein

Number of amino acids: Translated: 119; Mature: 119

Protein sequence:

>119_residues
MESNDGATKPRVPASAGTWKCDMTRPGYLYLMASARNGTLYLGVTSDLLARVWQHRNEVVESFTKKYGCHTLVWYEAFDD
IQQARQRELQMKKWKRAWKIELIERDNPQWLDLFDRLSL

Sequences:

>Translated_119_residues
MESNDGATKPRVPASAGTWKCDMTRPGYLYLMASARNGTLYLGVTSDLLARVWQHRNEVVESFTKKYGCHTLVWYEAFDD
IQQARQRELQMKKWKRAWKIELIERDNPQWLDLFDRLSL
>Mature_119_residues
MESNDGATKPRVPASAGTWKCDMTRPGYLYLMASARNGTLYLGVTSDLLARVWQHRNEVVESFTKKYGCHTLVWYEAFDD
IQQARQRELQMKKWKRAWKIELIERDNPQWLDLFDRLSL

Specific function: Unknown

COG id: COG2827

COG function: function code L; Predicted endonuclease containing a URI domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 14041; Mature: 14041

Theoretical pI: Translated: 9.11; Mature: 9.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESNDGATKPRVPASAGTWKCDMTRPGYLYLMASARNGTLYLGVTSDLLARVWQHRNEVV
CCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEEECCCCEEEEEEHHHHHHHHHHHHHHHH
ESFTKKYGCHTLVWYEAFDDIQQARQRELQMKKWKRAWKIELIERDNPQWLDLFDRLSL
HHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCHHHHHHHHHCC
>Mature Secondary Structure
MESNDGATKPRVPASAGTWKCDMTRPGYLYLMASARNGTLYLGVTSDLLARVWQHRNEVV
CCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEEECCCCEEEEEEHHHHHHHHHHHHHHHH
ESFTKKYGCHTLVWYEAFDDIQQARQRELQMKKWKRAWKIELIERDNPQWLDLFDRLSL
HHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA