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The map label for this gene is ybeY [C]

Identifier: 103487640

GI number: 103487640

Start: 2270145

End: 2270651

Strand: Reverse

Name: ybeY [C]

Synonym: Sala_2159

Alternate gene names: 103487640

Gene position: 2270651-2270145 (Counterclockwise)

Preceding gene: 103487646

Following gene: 103487639

Centisome position: 67.88

GC content: 65.88

Gene sequence:

>507_bases
ATGTTGAGCGTTGAAACCCACGCCGCGGCGCCGTGGCCCGACGCGCTCGACTGGGCAGCGCGCGCGGCCGAGGCGGTGGC
AGCGGCGTTTGCCATCACCCCCTTCGCGGCGCTCGCCGACGCGGCGCCGCTGGTCGAGGTTGCGGTGCGCCTGACCGACG
ATGCCGAGGTGCATACGCTCAACCGCGATTTCCGCGGGCGTGACAAGCCGACCAATGTGCTCTCCTTTCCGCAGGTACAG
AACGACCTGCTCGAAAGTCTCGCGAACAGCGACGATGGCGAAATCCTGCTGGGGGACATCGTTCTCGCGCGCGAAACCTG
CGCGCGCGAAGCGGATGAGAAGGGCGTTTCGCTCGCCGCCCACGCGACGCACCTCATCGTTCACGGCGCGCTGCACCTCG
TCGGCTACGACCATATGGACGATGTTTCGGCGGCGGCGATGGAAGCGCTCGAAGTGAAAGCCCTTGCATCGCTGGGCATC
GCCAATCCATATGCCGATCAGGATTAA

Upstream 100 bases:

>100_bases
CGCCGAACGACGATCCCGCATGTGTCAAGCCATCGCCGAAAATACGAATTGCGAATAAAATTGCGCAGTTTTCCGGCCTT
CTTCTTGTGGAGACCTGCCC

Downstream 100 bases:

>100_bases
TTCAGGATATGTTGCAACCATGCCCGACGACCAGGGATCTTCGAACCGATCGGAAGAGGACAGTAGCAGGTCCGGGCTGC
TGTCCGGACTGAAAAACCTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 168; Mature: 168

Protein sequence:

>168_residues
MLSVETHAAAPWPDALDWAARAAEAVAAAFAITPFAALADAAPLVEVAVRLTDDAEVHTLNRDFRGRDKPTNVLSFPQVQ
NDLLESLANSDDGEILLGDIVLARETCAREADEKGVSLAAHATHLIVHGALHLVGYDHMDDVSAAAMEALEVKALASLGI
ANPYADQD

Sequences:

>Translated_168_residues
MLSVETHAAAPWPDALDWAARAAEAVAAAFAITPFAALADAAPLVEVAVRLTDDAEVHTLNRDFRGRDKPTNVLSFPQVQ
NDLLESLANSDDGEILLGDIVLARETCAREADEKGVSLAAHATHLIVHGALHLVGYDHMDDVSAAAMEALEVKALASLGI
ANPYADQD
>Mature_168_residues
MLSVETHAAAPWPDALDWAARAAEAVAAAFAITPFAALADAAPLVEVAVRLTDDAEVHTLNRDFRGRDKPTNVLSFPQVQ
NDLLESLANSDDGEILLGDIVLARETCAREADEKGVSLAAHATHLIVHGALHLVGYDHMDDVSAAAMEALEVKALASLGI
ANPYADQD

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

Organism=Escherichia coli, GI1786880, Length=120, Percent_Identity=48.3333333333333, Blast_Score=107, Evalue=4e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_SPHAL (Q1GR54)

Other databases:

- EMBL:   CP000356
- RefSeq:   YP_617201.1
- ProteinModelPortal:   Q1GR54
- SMR:   Q1GR54
- GeneID:   4080193
- GenomeReviews:   CP000356_GR
- KEGG:   sal:Sala_2159
- NMPDR:   fig|317655.9.peg.2087
- HOGENOM:   HBG734136
- OMA:   DIIIARE
- ProtClustDB:   CLSK846779
- BioCyc:   SALA317655:SALA_2159-MONOMER
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 17744; Mature: 17744

Theoretical pI: Translated: 4.18; Mature: 4.18

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSVETHAAAPWPDALDWAARAAEAVAAAFAITPFAALADAAPLVEVAVRLTDDAEVHTL
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCEEEEC
NRDFRGRDKPTNVLSFPQVQNDLLESLANSDDGEILLGDIVLARETCAREADEKGVSLAA
CCCCCCCCCCCCCEECHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHCCCCHHH
HATHLIVHGALHLVGYDHMDDVSAAAMEALEVKALASLGIANPYADQD
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MLSVETHAAAPWPDALDWAARAAEAVAAAFAITPFAALADAAPLVEVAVRLTDDAEVHTL
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCEEEEC
NRDFRGRDKPTNVLSFPQVQNDLLESLANSDDGEILLGDIVLARETCAREADEKGVSLAA
CCCCCCCCCCCCCEECHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHCCCCHHH
HATHLIVHGALHLVGYDHMDDVSAAAMEALEVKALASLGIANPYADQD
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA