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The map label for this gene is intS [H]

Identifier: 103487616

GI number: 103487616

Start: 2238783

End: 2239109

Strand: Reverse

Name: intS [H]

Synonym: Sala_2135

Alternate gene names: 103487616

Gene position: 2239109-2238783 (Counterclockwise)

Preceding gene: 103487624

Following gene: 103487609

Centisome position: 66.94

GC content: 58.72

Gene sequence:

>327_bases
ATGCCGCTGATCGAGACTCGGCTTTGCGCCCTCGAGCCAAAGGACAAGCCCTACAAGGTTGCTGACGACCGCGGATTTTA
CGTCGAGGTCTTCCCAGCCGGGGGCAAACTCTGGCGATTCCGCTACCGGATCGGCCCGGTCGAACAGAAGCTGTCGATCG
GTGCCTATCCCGCGATCAGCCTGAAGCAGGCGAGGCAGTCAGCATGGACATTAGCTCAAGTTTCAATTGATGGCCGTCCG
ATGCCGCGCGCCTTCGCGGGCCCGAGCAACAATGTCAGGTTCCGGCGCCTCGATGGCGTCAGAAAATCTTTTATTTCAAC
GGATTGA

Upstream 100 bases:

>100_bases
TGGATCGTGCCGGATCGTCCCGCCTTTTCTCGGGGGTTCCGCACATTTTGCGGGCTTTTTGCAGGCCTTTGCGAAAACCA
CATCGGGAAAAGGCCCGAAC

Downstream 100 bases:

>100_bases
CTGGTGCCGCTTACAGGACTCGAACCTGTGGCCCCATCATTACGAATGATGTGCTCTACCAACTGAGCTAAAGCGGCAAC
GCCGGCGCCTCTAACAGTGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 108; Mature: 107

Protein sequence:

>108_residues
MPLIETRLCALEPKDKPYKVADDRGFYVEVFPAGGKLWRFRYRIGPVEQKLSIGAYPAISLKQARQSAWTLAQVSIDGRP
MPRAFAGPSNNVRFRRLDGVRKSFISTD

Sequences:

>Translated_108_residues
MPLIETRLCALEPKDKPYKVADDRGFYVEVFPAGGKLWRFRYRIGPVEQKLSIGAYPAISLKQARQSAWTLAQVSIDGRP
MPRAFAGPSNNVRFRRLDGVRKSFISTD
>Mature_107_residues
PLIETRLCALEPKDKPYKVADDRGFYVEVFPAGGKLWRFRYRIGPVEQKLSIGAYPAISLKQARQSAWTLAQVSIDGRPM
PRAFAGPSNNVRFRRLDGVRKSFISTD

Specific function: Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome [H]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1788690, Length=90, Percent_Identity=36.6666666666667, Blast_Score=67, Evalue=2e-13,
Organism=Escherichia coli, GI145693166, Length=69, Percent_Identity=44.9275362318841, Blast_Score=60, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 12243; Mature: 12112

Theoretical pI: Translated: 10.79; Mature: 10.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLIETRLCALEPKDKPYKVADDRGFYVEVFPAGGKLWRFRYRIGPVEQKLSIGAYPAIS
CCCCCCEEEEECCCCCCEEEECCCCCEEEEEECCCCEEEEEEECCCCCCCEECCCCCCCH
LKQARQSAWTLAQVSIDGRPMPRAFAGPSNNVRFRRLDGVRKSFISTD
HHHHHHHHEEEEEEEECCCCCCCCCCCCCCCEEEEECCHHHHHHCCCC
>Mature Secondary Structure 
PLIETRLCALEPKDKPYKVADDRGFYVEVFPAGGKLWRFRYRIGPVEQKLSIGAYPAIS
CCCCCEEEEECCCCCCEEEECCCCCEEEEEECCCCEEEEEEECCCCCCCEECCCCCCCH
LKQARQSAWTLAQVSIDGRPMPRAFAGPSNNVRFRRLDGVRKSFISTD
HHHHHHHHEEEEEEEECCCCCCCCCCCCCCCEEEEECCHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]