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The map label for this gene is czcR [H]

Identifier: 103487603

GI number: 103487603

Start: 2228568

End: 2229461

Strand: Reverse

Name: czcR [H]

Synonym: Sala_2122

Alternate gene names: 103487603

Gene position: 2229461-2228568 (Counterclockwise)

Preceding gene: 103487609

Following gene: 103487598

Centisome position: 66.65

GC content: 69.35

Gene sequence:

>894_bases
ATGTCTATCAATCGCGTCGCGCTCTACCATCTCGAAACCCTGCTCTGGATCGACCGGCTCGGCACCTTTTCGGCCGCCGC
CGAACGGCTCAACACGACGCAGCCCGCGGTGTCGGCGCGGATGCGCGAGCTTGAACAAAGGCTCGGCACACCGCTGTTCC
ACCGCGACGGCCGGACGATGGCGCTGACCGCTGCGGGGCGCAAGCTGGTGCGCGACTGCGACCCGTTGCTGCGCGACATG
CAGCTCGCGCTGCTCGGCAGCGGCGGCTTTGCCGAGGCGAGCGGCGTCGTGCGCATCGGCGCGGGGGAGATTGCGGCGGC
GAGCTGTCTGCCCGCCTTTGTCGCGCGGTTGAAGGCCGACATGCCCAATGTCGCGCTGGAGATCGAGATCGACCTGACCG
CCAACCTCATCCAGCAACTGCTCACCGGGCGCACCGACATTGCCTTTGCCGCGGGGCCGATCGCGCACCCGGCGCTCAAG
ACCAGCCCGATCGGTGAGGTCGAGCTGGTGTGGCTCGCGAATCCGGCGGTCGCCGCCGCCTTTGCAGGGGGCGAGGCGAT
GCCGCCGGTCTGGTCGCTCGCCAGCCATTCGCCGATTCACGGCCGGATGCGCGAGGCGATCGCCGCGTCGCGCATAGCGC
AAAAATCGCTCAACCTCTGCAACAACGCCCGCATGATGATCGACATCGCGCGCGCGGGCGGCGGCATCGGCATCTTTCCC
CGCCCGATGGTGCGCGGCGAGATCGCGGCGGGCGCGCTCGTCGAAATTGCCGCGATGCCCGCGCTCGCCCCGGTCGCCTT
CCACGTCGCGATGCGCGTCGCCGACACCGAGCCCGTGCTGACGCAAATCTTCGAGCGCGCGGCGAAGCTCGACCTCGCTG
AGGTGGCGGTTTGA

Upstream 100 bases:

>100_bases
GTTCGCCATTCAACGGCCTCCTGGCTGGGGGTGCGGGCGCGACCTTGGCGCAAATAATCCATCAATTCTAATTGTTCTAA
TTTTCGATTATGGATAAATT

Downstream 100 bases:

>100_bases
ACCGGACGGCCGGAAACGACCGATTGCGGCCTGAAGCGATCCTCCCCCGTTGGGGGAGGATCGCTTCAGGCCACTCCCCA
CCCAAAAAAACAGCCAATTC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 296

Protein sequence:

>297_residues
MSINRVALYHLETLLWIDRLGTFSAAAERLNTTQPAVSARMRELEQRLGTPLFHRDGRTMALTAAGRKLVRDCDPLLRDM
QLALLGSGGFAEASGVVRIGAGEIAAASCLPAFVARLKADMPNVALEIEIDLTANLIQQLLTGRTDIAFAAGPIAHPALK
TSPIGEVELVWLANPAVAAAFAGGEAMPPVWSLASHSPIHGRMREAIAASRIAQKSLNLCNNARMMIDIARAGGGIGIFP
RPMVRGEIAAGALVEIAAMPALAPVAFHVAMRVADTEPVLTQIFERAAKLDLAEVAV

Sequences:

>Translated_297_residues
MSINRVALYHLETLLWIDRLGTFSAAAERLNTTQPAVSARMRELEQRLGTPLFHRDGRTMALTAAGRKLVRDCDPLLRDM
QLALLGSGGFAEASGVVRIGAGEIAAASCLPAFVARLKADMPNVALEIEIDLTANLIQQLLTGRTDIAFAAGPIAHPALK
TSPIGEVELVWLANPAVAAAFAGGEAMPPVWSLASHSPIHGRMREAIAASRIAQKSLNLCNNARMMIDIARAGGGIGIFP
RPMVRGEIAAGALVEIAAMPALAPVAFHVAMRVADTEPVLTQIFERAAKLDLAEVAV
>Mature_296_residues
SINRVALYHLETLLWIDRLGTFSAAAERLNTTQPAVSARMRELEQRLGTPLFHRDGRTMALTAAGRKLVRDCDPLLRDMQ
LALLGSGGFAEASGVVRIGAGEIAAASCLPAFVARLKADMPNVALEIEIDLTANLIQQLLTGRTDIAFAAGPIAHPALKT
SPIGEVELVWLANPAVAAAFAGGEAMPPVWSLASHSPIHGRMREAIAASRIAQKSLNLCNNARMMIDIARAGGGIGIFPR
PMVRGEIAAGALVEIAAMPALAPVAFHVAMRVADTEPVLTQIFERAAKLDLAEVAV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788481, Length=279, Percent_Identity=27.2401433691756, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1788887, Length=152, Percent_Identity=28.2894736842105, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI87082132, Length=250, Percent_Identity=26.4, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1787806, Length=241, Percent_Identity=23.6514522821577, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI157672245, Length=162, Percent_Identity=29.0123456790123, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1786401, Length=254, Percent_Identity=24.8031496062992, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1788626, Length=156, Percent_Identity=34.6153846153846, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1790783, Length=299, Percent_Identity=23.4113712374582, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1787601, Length=158, Percent_Identity=26.5822784810127, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI87081904, Length=161, Percent_Identity=31.055900621118, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1790208, Length=242, Percent_Identity=25.2066115702479, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1789639, Length=244, Percent_Identity=24.5901639344262, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 31444; Mature: 31313

Theoretical pI: Translated: 7.61; Mature: 7.61

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSINRVALYHLETLLWIDRLGTFSAAAERLNTTQPAVSARMRELEQRLGTPLFHRDGRTM
CCCCHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEECCCCEE
ALTAAGRKLVRDCDPLLRDMQLALLGSGGFAEASGVVRIGAGEIAAASCLPAFVARLKAD
EEEHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHCC
MPNVALEIEIDLTANLIQQLLTGRTDIAFAAGPIAHPALKTSPIGEVELVWLANPAVAAA
CCCEEEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCEEEEEECCCHHHHH
FAGGEAMPPVWSLASHSPIHGRMREAIAASRIAQKSLNLCNNARMMIDIARAGGGIGIFP
CCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCC
RPMVRGEIAAGALVEIAAMPALAPVAFHVAMRVADTEPVLTQIFERAAKLDLAEVAV
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHCC
>Mature Secondary Structure 
SINRVALYHLETLLWIDRLGTFSAAAERLNTTQPAVSARMRELEQRLGTPLFHRDGRTM
CCCHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEECCCCEE
ALTAAGRKLVRDCDPLLRDMQLALLGSGGFAEASGVVRIGAGEIAAASCLPAFVARLKAD
EEEHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHCC
MPNVALEIEIDLTANLIQQLLTGRTDIAFAAGPIAHPALKTSPIGEVELVWLANPAVAAA
CCCEEEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCEEEEEECCCHHHHH
FAGGEAMPPVWSLASHSPIHGRMREAIAASRIAQKSLNLCNNARMMIDIARAGGGIGIFP
CCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCC
RPMVRGEIAAGALVEIAAMPALAPVAFHVAMRVADTEPVLTQIFERAAKLDLAEVAV
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA