| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487598
Identifier: 103487598
GI number: 103487598
Start: 2224365
End: 2224964
Strand: Reverse
Name: 103487598
Synonym: Sala_2117
Alternate gene names: NA
Gene position: 2224964-2224365 (Counterclockwise)
Preceding gene: 103487603
Following gene: 103487597
Centisome position: 66.51
GC content: 63.67
Gene sequence:
>600_bases ATGCCCGTTCGCACGCTCTTCGCCAGCACTTTCTACGAAGCCGACATCGGCACCCCCGACCTGCTCGATGCGCTGGAGGA AAGCTGCCGCCTGTTCGCCGAAGAGGATGGCGCCGGGAAAGCGTGGAGCCGCGAGCATGGCTATAAGGGTTATACCAGCT ACGCGAGTCTCGGCGACCTGCCCGAACGCGACCCGGCCTTTTACGATCTGAAAAAACTGCTCGACAAGCAGGTGAAGGCC TTTGCCGGGGCGTGCCACTTCGACCTTGCCAAACCGCTGAAACTCGACAGCCTGTGGGTCAATATCCTGAAACCCGGCGG CACGCACAGCGGCCATATCCACCCGCATTCCATCGTCTCGGGCACCTTCTACGTCGCCGTGCCGCCGGGGTCGGGCGCGC TCAAGCTCGAAGACCCGCGCCTGCCGATGCTGATGGCGGCGCCGGGACGTACCGACGATGCCCCCGAATATCTCCGCCCC TTCGTCTACGCCGAACCCGCCGCGGGCCGCGTCTTTTTGTGGGAAAGCTGGCTGAGGCACGAGGTGATGCCGCACGCGGG CAAGGGCGAGCGGATCAGCATCAGCTTTAACTATCGTTGA
Upstream 100 bases:
>100_bases CACCGGCGCCTCGGGAAAGCGCAGTCCGTCGGCGATCAGTTCAAACTCGGCCATCCCCATCTCCCTTGCTCTCGCTCATC GGCTGTGCTTTGCGGCCATC
Downstream 100 bases:
>100_bases GCCAATCCTATATCGCGCGCATCTGTTAGACTATGCCCTCTTCCCGTTCGTGTCGAGCGAAGTCGAGACGCCTCTCGGCC TTGCGCTGTTCCGATGGGTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 199; Mature: 198
Protein sequence:
>199_residues MPVRTLFASTFYEADIGTPDLLDALEESCRLFAEEDGAGKAWSREHGYKGYTSYASLGDLPERDPAFYDLKKLLDKQVKA FAGACHFDLAKPLKLDSLWVNILKPGGTHSGHIHPHSIVSGTFYVAVPPGSGALKLEDPRLPMLMAAPGRTDDAPEYLRP FVYAEPAAGRVFLWESWLRHEVMPHAGKGERISISFNYR
Sequences:
>Translated_199_residues MPVRTLFASTFYEADIGTPDLLDALEESCRLFAEEDGAGKAWSREHGYKGYTSYASLGDLPERDPAFYDLKKLLDKQVKA FAGACHFDLAKPLKLDSLWVNILKPGGTHSGHIHPHSIVSGTFYVAVPPGSGALKLEDPRLPMLMAAPGRTDDAPEYLRP FVYAEPAAGRVFLWESWLRHEVMPHAGKGERISISFNYR >Mature_198_residues PVRTLFASTFYEADIGTPDLLDALEESCRLFAEEDGAGKAWSREHGYKGYTSYASLGDLPERDPAFYDLKKLLDKQVKAF AGACHFDLAKPLKLDSLWVNILKPGGTHSGHIHPHSIVSGTFYVAVPPGSGALKLEDPRLPMLMAAPGRTDDAPEYLRPF VYAEPAAGRVFLWESWLRHEVMPHAGKGERISISFNYR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22107; Mature: 21976
Theoretical pI: Translated: 6.51; Mature: 6.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPVRTLFASTFYEADIGTPDLLDALEESCRLFAEEDGAGKAWSREHGYKGYTSYASLGDL CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCC PERDPAFYDLKKLLDKQVKAFAGACHFDLAKPLKLDSLWVNILKPGGTHSGHIHPHSIVS CCCCCHHHHHHHHHHHHHHHHHCCHHHCCCCCCCHHHEEEEEECCCCCCCCCCCCCEEEC GTFYVAVPPGSGALKLEDPRLPMLMAAPGRTDDAPEYLRPFVYAEPAAGRVFLWESWLRH CEEEEEECCCCCEEEEECCCCCEEEECCCCCCCCHHHHCCEEEECCCCCEEEEHHHHHHH EVMPHAGKGERISISFNYR HCCCCCCCCCEEEEEECCC >Mature Secondary Structure PVRTLFASTFYEADIGTPDLLDALEESCRLFAEEDGAGKAWSREHGYKGYTSYASLGDL CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCC PERDPAFYDLKKLLDKQVKAFAGACHFDLAKPLKLDSLWVNILKPGGTHSGHIHPHSIVS CCCCCHHHHHHHHHHHHHHHHHCCHHHCCCCCCCHHHEEEEEECCCCCCCCCCCCCEEEC GTFYVAVPPGSGALKLEDPRLPMLMAAPGRTDDAPEYLRPFVYAEPAAGRVFLWESWLRH CEEEEEECCCCCEEEEECCCCCEEEECCCCCCCCHHHHCCEEEECCCCCEEEEHHHHHHH EVMPHAGKGERISISFNYR HCCCCCCCCCEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA