| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is corA [H]
Identifier: 103487579
GI number: 103487579
Start: 2206004
End: 2206975
Strand: Reverse
Name: corA [H]
Synonym: Sala_2098
Alternate gene names: 103487579
Gene position: 2206975-2206004 (Counterclockwise)
Preceding gene: 103487580
Following gene: 103487576
Centisome position: 65.97
GC content: 62.96
Gene sequence:
>972_bases ATGCCGATCATGGCCGCTCGCGTTTATCATCGGGGCAAGCTGGTCCGCGACCTGGGGCCGCACGAAGCGTTGCCCGAGGA TTGCGATCCCGGCGATTTCTTCTGGCTCGGCCTGTTTGCGCCAACCCCCGAAGAGCTGTCGAGCATCGCGAAACGCTTTG GCCTTCACCCGCTCGCGGTCGAAGATGCGCTGAAGGCGAACCAGCTGCCAAAGGTCGAGGTTTATGGTGACCAGCTATTC GTCGTCGCGCGCACCGCCACGCTCGACGGCGAGGCGATCCACGCGGGCGAAACCGCATTGTTCCTTGGTCGGCATTTTCT CGTGAGCGTTCGCCACGGATCGGCGCGCGCGCACACCGACGTTCGTGCCCGGCTCGAAAGCCTGCCCGCCAAGCTCGCGC ATGGACCCGATTATGTGCTCTACGCGGTGCTCGATTTCATCGTCGACGGCTATTTCCCGGTGATCGACGCGATCGAGGAT CGTATGCTGGGCGTCGAGGACCGGGTGATGGACACGCCGCTCAGCGCCGCGGACATTCGCCATCTCTACAAACAAAGGCA CGAAATCATCCGTTTCCAGCGGCTCGTCGGGATGATGAAGGAAGTCGCGGCGCGGCTGGCCAATGGCGACGAATTGCCCG CGATCGACCCCGTCGTGCGCCCCTTTTTCCGTGACGTCTGGGACCATGTCCAGCGTGCCGAATATCGTCTGGCGGGGCTG CGCGACATTGCGGTGTCGGTGATCGAAACCAACGGGATGCTCGAACAACAACGCCAGGGCGCGATCACCCGCCAGCTCGC GGCGTGGGCTGCGATCCTCGCGGTTCCGACCGCGATCGCAGGCATTTATGGGATGAACTTCGACTATATGCCCGAACTTC GCTGGCCCTTCGGCTATCCGCTGATCGTCGGCGGCATGACCGCGATCTGCCTCACCCTCTATTGGCGCTTCAAACGCATC GGCTGGCTCTGA
Upstream 100 bases:
>100_bases TAGGCCGGATTGGTGGCGACGGCGGCTCCGGTCCGTTGGGGATTCCCGTTGGGCGGTGCAGTCCCTATAGGACGGCTTCG ACAAAGGAGGATCGTCCGCA
Downstream 100 bases:
>100_bases TAGCCCGACGCACGGCTTGCCAGCCGCGGCGCCTTGTGGCAGGGGCGCGCTTCCCTTCGGGGGCGCTTAGCTCAGCTGGT AGAGCATCTCGTTTACACCG
Product: magnesium and cobalt transport protein CorA
Products: Ni2; [Cytoplasm]; Co; 2 [Cytoplasm]; Mg (II) [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 323; Mature: 322
Protein sequence:
>323_residues MPIMAARVYHRGKLVRDLGPHEALPEDCDPGDFFWLGLFAPTPEELSSIAKRFGLHPLAVEDALKANQLPKVEVYGDQLF VVARTATLDGEAIHAGETALFLGRHFLVSVRHGSARAHTDVRARLESLPAKLAHGPDYVLYAVLDFIVDGYFPVIDAIED RMLGVEDRVMDTPLSAADIRHLYKQRHEIIRFQRLVGMMKEVAARLANGDELPAIDPVVRPFFRDVWDHVQRAEYRLAGL RDIAVSVIETNGMLEQQRQGAITRQLAAWAAILAVPTAIAGIYGMNFDYMPELRWPFGYPLIVGGMTAICLTLYWRFKRI GWL
Sequences:
>Translated_323_residues MPIMAARVYHRGKLVRDLGPHEALPEDCDPGDFFWLGLFAPTPEELSSIAKRFGLHPLAVEDALKANQLPKVEVYGDQLF VVARTATLDGEAIHAGETALFLGRHFLVSVRHGSARAHTDVRARLESLPAKLAHGPDYVLYAVLDFIVDGYFPVIDAIED RMLGVEDRVMDTPLSAADIRHLYKQRHEIIRFQRLVGMMKEVAARLANGDELPAIDPVVRPFFRDVWDHVQRAEYRLAGL RDIAVSVIETNGMLEQQRQGAITRQLAAWAAILAVPTAIAGIYGMNFDYMPELRWPFGYPLIVGGMTAICLTLYWRFKRI GWL >Mature_322_residues PIMAARVYHRGKLVRDLGPHEALPEDCDPGDFFWLGLFAPTPEELSSIAKRFGLHPLAVEDALKANQLPKVEVYGDQLFV VARTATLDGEAIHAGETALFLGRHFLVSVRHGSARAHTDVRARLESLPAKLAHGPDYVLYAVLDFIVDGYFPVIDAIEDR MLGVEDRVMDTPLSAADIRHLYKQRHEIIRFQRLVGMMKEVAARLANGDELPAIDPVVRPFFRDVWDHVQRAEYRLAGLR DIAVSVIETNGMLEQQRQGAITRQLAAWAAILAVPTAIAGIYGMNFDYMPELRWPFGYPLIVGGMTAICLTLYWRFKRIG WL
Specific function: Mediates influx of magnesium ions [H]
COG id: COG0598
COG function: function code P; Mg2+ and Co2+ transporters
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the CorA metal ion transporter (MIT) (TC 1.A.35) family [H]
Homologues:
Organism=Saccharomyces cerevisiae, GI6321058, Length=198, Percent_Identity=30.3030303030303, Blast_Score=75, Evalue=2e-14, Organism=Saccharomyces cerevisiae, GI6324442, Length=196, Percent_Identity=28.5714285714286, Blast_Score=71, Evalue=3e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004488 - InterPro: IPR002523 [H]
Pfam domain/function: PF01544 CorA [H]
EC number: NA
Molecular weight: Translated: 36312; Mature: 36180
Theoretical pI: Translated: 6.59; Mature: 6.59
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPIMAARVYHRGKLVRDLGPHEALPEDCDPGDFFWLGLFAPTPEELSSIAKRFGLHPLAV CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCHHH EDALKANQLPKVEVYGDQLFVVARTATLDGEAIHAGETALFLGRHFLVSVRHGSARAHTD HHHHHHCCCCEEEEECCEEEEEEEEEECCCCEEECCCHHHHHHHHHEEEEECCCCHHHHH VRARLESLPAKLAHGPDYVLYAVLDFIVDGYFPVIDAIEDRMLGVEDRVMDTPLSAADIR HHHHHHHHHHHHCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHCCCHHHHHCCCCCHHHHH HLYKQRHEIIRFQRLVGMMKEVAARLANGDELPAIDPVVRPFFRDVWDHVQRAEYRLAGL HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH RDIAVSVIETNGMLEQQRQGAITRQLAAWAAILAVPTAIAGIYGMNFDYMPELRWPFGYP HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCH LIVGGMTAICLTLYWRFKRIGWL HHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure PIMAARVYHRGKLVRDLGPHEALPEDCDPGDFFWLGLFAPTPEELSSIAKRFGLHPLAV CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCHHH EDALKANQLPKVEVYGDQLFVVARTATLDGEAIHAGETALFLGRHFLVSVRHGSARAHTD HHHHHHCCCCEEEEECCEEEEEEEEEECCCCEEECCCHHHHHHHHHEEEEECCCCHHHHH VRARLESLPAKLAHGPDYVLYAVLDFIVDGYFPVIDAIEDRMLGVEDRVMDTPLSAADIR HHHHHHHHHHHHCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHCCCHHHHHCCCCCHHHHH HLYKQRHEIIRFQRLVGMMKEVAARLANGDELPAIDPVVRPFFRDVWDHVQRAEYRLAGL HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH RDIAVSVIETNGMLEQQRQGAITRQLAAWAAILAVPTAIAGIYGMNFDYMPELRWPFGYP HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCH LIVGGMTAICLTLYWRFKRIGWL HHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: Ni2; [Periplasm]; Co; 2 [Periplasm]; Mg (II) [Periplasm] [C]
Specific reaction: Ni2+ [Periplasm] = Ni2+ [Cytoplasm] Co+2 [Periplasm] = Co+2 [Cytoplasm] Mg (II) [Periplasm] = Mg (II) [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 10360571 [H]