| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487561
Identifier: 103487561
GI number: 103487561
Start: 2185256
End: 2185882
Strand: Reverse
Name: 103487561
Synonym: Sala_2080
Alternate gene names: NA
Gene position: 2185882-2185256 (Counterclockwise)
Preceding gene: 103487562
Following gene: 103487558
Centisome position: 65.34
GC content: 65.39
Gene sequence:
>627_bases ATGGATCGTACCGCGCGCGCGCGCGATCCCGACGGCCTTGGGCCATTGCATCAGAGCCGCGCCGCTGACGGTGACCAATG TTTGCCGGCGCCGAGCGCCGCGGTCGCGATGTCGTGGAACGCGGCGGTCGGCGCGCTGTCGACGATGACGTCCGACCGGG CCACCAGTTCGCCGATGTCCACGATCGGCACCGGCTTTTGCAGCGCGGCCATGGCGGCTTGCGCGCGCGATTACCCCACC TCGTCGTGCCGTTCGAGCCGCGGCACATCTTTGGTGCGGCGTCGAACTTCATCGAACATGCCGCGGAGATGCAGACCAGG CTTGCCGCCAAGACGAAAAAGCGATCCCTATATCTTTCTCAAGACCGTCGAGAGCGTCGTCGGTCCCGGCGACACGGTCG CGGTGCCGCCGCAGGTGGAACGCCCGGACTGGGAGGTCGAACTGGGCGTCGCGATCGGCAAGGCGGGAAAGAATGTCGCG GTGGCCGACGCGCACGCACTGATCGCAGGCTATACGGTGGTCAATGACGTGTCGGCACGTGACCGCACGCGGCGGAGCGA CTTTCCGTTATTTATGAACAGATTGCCTGTCTTTCGACGATCCTCGAACTCCGGGCAGGCGATCTGA
Upstream 100 bases:
>100_bases GCGGTTCGGTGAGTTCGCCGAAGTCGATCCGGTTGCGCACGACATGATCGGCCTTGATCAGCGACATCACCGGCTTGCGC GTAACAACCATCGTGACCGA
Downstream 100 bases:
>100_bases TCGCCTCCGGCACCCCCGCGGGGGCCGGCATGGGGCGCGGTCTGTTCCTGAAGGATGGCGACGTCATGTCGGCGTGGGTC GGGGGGGGGGATTTTGACGG
Product: fumarylacetoacetate (FAA) hydrolase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 208; Mature: 208
Protein sequence:
>208_residues MDRTARARDPDGLGPLHQSRAADGDQCLPAPSAAVAMSWNAAVGALSTMTSDRATSSPMSTIGTGFCSAAMAACARDYPT SSCRSSRGTSLVRRRTSSNMPRRCRPGLPPRRKSDPYIFLKTVESVVGPGDTVAVPPQVERPDWEVELGVAIGKAGKNVA VADAHALIAGYTVVNDVSARDRTRRSDFPLFMNRLPVFRRSSNSGQAI
Sequences:
>Translated_208_residues MDRTARARDPDGLGPLHQSRAADGDQCLPAPSAAVAMSWNAAVGALSTMTSDRATSSPMSTIGTGFCSAAMAACARDYPT SSCRSSRGTSLVRRRTSSNMPRRCRPGLPPRRKSDPYIFLKTVESVVGPGDTVAVPPQVERPDWEVELGVAIGKAGKNVA VADAHALIAGYTVVNDVSARDRTRRSDFPLFMNRLPVFRRSSNSGQAI >Mature_208_residues MDRTARARDPDGLGPLHQSRAADGDQCLPAPSAAVAMSWNAAVGALSTMTSDRATSSPMSTIGTGFCSAAMAACARDYPT SSCRSSRGTSLVRRRTSSNMPRRCRPGLPPRRKSDPYIFLKTVESVVGPGDTVAVPPQVERPDWEVELGVAIGKAGKNVA VADAHALIAGYTVVNDVSARDRTRRSDFPLFMNRLPVFRRSSNSGQAI
Specific function: Unknown
COG id: COG0179
COG function: function code Q; 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the FAH family [H]
Homologues:
Organism=Homo sapiens, GI40786394, Length=74, Percent_Identity=55.4054054054054, Blast_Score=82, Evalue=3e-16, Organism=Homo sapiens, GI156231349, Length=74, Percent_Identity=52.7027027027027, Blast_Score=82, Evalue=3e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002529 - InterPro: IPR011234 [H]
Pfam domain/function: PF01557 FAA_hydrolase [H]
EC number: NA
Molecular weight: Translated: 22149; Mature: 22149
Theoretical pI: Translated: 10.58; Mature: 10.58
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 5.8 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 5.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDRTARARDPDGLGPLHQSRAADGDQCLPAPSAAVAMSWNAAVGALSTMTSDRATSSPMS CCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCEEEEECCHHHHHHHHHHCCCCCCCCHH TIGTGFCSAAMAACARDYPTSSCRSSRGTSLVRRRTSSNMPRRCRPGLPPRRKSDPYIFL HHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEH KTVESVVGPGDTVAVPPQVERPDWEVELGVAIGKAGKNVAVADAHALIAGYTVVNDVSAR EEHHHHHCCCCCEECCCCCCCCCCEEEEEEEECCCCCCEEEEHHHHHHHHHHHHHCCHHH DRTRRSDFPLFMNRLPVFRRSSNSGQAI HHHCCCCCCHHHHHCCCEEECCCCCCCC >Mature Secondary Structure MDRTARARDPDGLGPLHQSRAADGDQCLPAPSAAVAMSWNAAVGALSTMTSDRATSSPMS CCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCEEEEECCHHHHHHHHHHCCCCCCCCHH TIGTGFCSAAMAACARDYPTSSCRSSRGTSLVRRRTSSNMPRRCRPGLPPRRKSDPYIFL HHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEH KTVESVVGPGDTVAVPPQVERPDWEVELGVAIGKAGKNVAVADAHALIAGYTVVNDVSAR EEHHHHHCCCCCEECCCCCCCCCCEEEEEEEECCCCCCEEEEHHHHHHHHHHHHHCCHHH DRTRRSDFPLFMNRLPVFRRSSNSGQAI HHHCCCCCCHHHHHCCCEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9679194 [H]