| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is hisD [H]
Identifier: 103487509
GI number: 103487509
Start: 2138000
End: 2139292
Strand: Reverse
Name: hisD [H]
Synonym: Sala_2026
Alternate gene names: 103487509
Gene position: 2139292-2138000 (Counterclockwise)
Preceding gene: 103487510
Following gene: 103487508
Centisome position: 63.95
GC content: 68.91
Gene sequence:
>1293_bases ATGCGGCGGCTTGACGCCTCGGCGCCCGGCTTTGCGGCTCAGTTCGACGCGCTGGTCAATGACCGGCGCGAGAGTGCGTC CGACGTGTCGGCGGATGTCGCGGCGATCATCGCGCGCGTCAAGGCCGAGGGCGACGCGGCGCTTGCCGACTATACCGCAA AGTTCGACCGCTTCGACCTCGATGCGCGCGGGTGGAGCATCGCGAAGAAGGATTGCGCGACGGCCTATCAGGCGCTGGCG CCCGACCTGCGCGACGCGCTGAACCTCGCTGCCGACCGCATCGGTGCCTATCATGCGGCGCAATTGCCCGAGGATCGCGA CTATCGCGATGCGACGGGCGCGCGGCTGGGTGCGCGCTGGAACGCGGTCGATGCCGCGGGGGTCTATGTCCCCGGCGGAC GCGCCGCCTATCCCTCGTCGGTGCTCATGAACATCCTGCCCGCGAAGGTCGCGGGGGTGGGGCGCATCGTGATGGTAACG CCGACGCCCGACGGCCAGGTCAATCCGGTCGTGATGGCTGCGGCGCATATCGGCGGCGTCGATGAAATCTGGCGCGTCGG CGGCGCGCAGGCGATCGCCGCGCTGGCCCATGGGACCGATCGGATCGCACCGGTCGATGTCGTCACCGGCCCCGGCAATG CGTGGGTCGCCGAGGCGAAGCGCCAGCTGTATGGCGTCGTCGGCATCGACATGGTAGCGGGGCCGAGCGAGATCGTCATC GTTGCCGACAACAAGAATGCGCCGCACGTCATCGCCGCCGACCTTTTGAGCCAGGCCGAGCATGATCCGACGAGCCAGTC GATCCTGTTCACCGACGACGGCGATTTCGCCGATGCCGTCGCAGCCGCGGTCGCAGACGTCATCCCGACGCTCGCCACCG CGGCGACGATGCTGGCGAGCTGGACCGACAATGGCGTTGTGATCGTCGTGCCGACGCTCGCCGATGCGATCCCGCTCTGC GACCGGCTGGCGCCCGAACATCTCGAACTCGCGGTCGATCCGGCCGAGGCCGATGCGCTCTTCGCCAGGGTGCGCCACGC CGGATCGGTCTTCCTCGGTCGCCAGACACCCGAGGCGATCGGCGATTATGTCGCGGGACCGAACCACGTCCTTCCCACCG GGCGCCGCGCGCGCTTTTCGAGCGGATTGTCGGTTACCGACTTCATGAAGCGCACCAGCTTCCTTGCGCTCGACGAGGCG AGCCTTGCGGCCATCGGTCCCGCGGCCGTCGCGCTCGCGGGCGCCGAGGGGCTTCCCGCCCATGCGCTCAGCGTGCAGAA TCGTCTGAAGTAG
Upstream 100 bases:
>100_bases AGCGAGGTATCGGCGCGGCTGATCGTCAATCGCGCTGCGTTCAAACTCAATTCGGCCGAAGTGCCTGCGCTCGTCGAGCG CTTCCGTCAGGCGGTGGGCG
Downstream 100 bases:
>100_bases AAATGTCATGAACAAACGCGCCCAGTCCCGTTCCGCCGCCCGCCTTGCCGCCGTGCAGGCGCTCTATCAGCACGAGATGG AGGCGACGCCGGTAGCTCAG
Product: histidinol dehydrogenase
Products: NA
Alternate protein names: HDH [H]
Number of amino acids: Translated: 430; Mature: 430
Protein sequence:
>430_residues MRRLDASAPGFAAQFDALVNDRRESASDVSADVAAIIARVKAEGDAALADYTAKFDRFDLDARGWSIAKKDCATAYQALA PDLRDALNLAADRIGAYHAAQLPEDRDYRDATGARLGARWNAVDAAGVYVPGGRAAYPSSVLMNILPAKVAGVGRIVMVT PTPDGQVNPVVMAAAHIGGVDEIWRVGGAQAIAALAHGTDRIAPVDVVTGPGNAWVAEAKRQLYGVVGIDMVAGPSEIVI VADNKNAPHVIAADLLSQAEHDPTSQSILFTDDGDFADAVAAAVADVIPTLATAATMLASWTDNGVVIVVPTLADAIPLC DRLAPEHLELAVDPAEADALFARVRHAGSVFLGRQTPEAIGDYVAGPNHVLPTGRRARFSSGLSVTDFMKRTSFLALDEA SLAAIGPAAVALAGAEGLPAHALSVQNRLK
Sequences:
>Translated_430_residues MRRLDASAPGFAAQFDALVNDRRESASDVSADVAAIIARVKAEGDAALADYTAKFDRFDLDARGWSIAKKDCATAYQALA PDLRDALNLAADRIGAYHAAQLPEDRDYRDATGARLGARWNAVDAAGVYVPGGRAAYPSSVLMNILPAKVAGVGRIVMVT PTPDGQVNPVVMAAAHIGGVDEIWRVGGAQAIAALAHGTDRIAPVDVVTGPGNAWVAEAKRQLYGVVGIDMVAGPSEIVI VADNKNAPHVIAADLLSQAEHDPTSQSILFTDDGDFADAVAAAVADVIPTLATAATMLASWTDNGVVIVVPTLADAIPLC DRLAPEHLELAVDPAEADALFARVRHAGSVFLGRQTPEAIGDYVAGPNHVLPTGRRARFSSGLSVTDFMKRTSFLALDEA SLAAIGPAAVALAGAEGLPAHALSVQNRLK >Mature_430_residues MRRLDASAPGFAAQFDALVNDRRESASDVSADVAAIIARVKAEGDAALADYTAKFDRFDLDARGWSIAKKDCATAYQALA PDLRDALNLAADRIGAYHAAQLPEDRDYRDATGARLGARWNAVDAAGVYVPGGRAAYPSSVLMNILPAKVAGVGRIVMVT PTPDGQVNPVVMAAAHIGGVDEIWRVGGAQAIAALAHGTDRIAPVDVVTGPGNAWVAEAKRQLYGVVGIDMVAGPSEIVI VADNKNAPHVIAADLLSQAEHDPTSQSILFTDDGDFADAVAAAVADVIPTLATAATMLASWTDNGVVIVVPTLADAIPLC DRLAPEHLELAVDPAEADALFARVRHAGSVFLGRQTPEAIGDYVAGPNHVLPTGRRARFSSGLSVTDFMKRTSFLALDEA SLAAIGPAAVALAGAEGLPAHALSVQNRLK
Specific function: Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine [H]
COG id: COG0141
COG function: function code E; Histidinol dehydrogenase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the histidinol dehydrogenase family [H]
Homologues:
Organism=Escherichia coli, GI1788331, Length=410, Percent_Identity=39.0243902439024, Blast_Score=252, Evalue=3e-68, Organism=Saccharomyces cerevisiae, GI6319819, Length=416, Percent_Identity=33.8942307692308, Blast_Score=216, Evalue=5e-57,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016161 - InterPro: IPR022695 - InterPro: IPR001692 - InterPro: IPR012131 [H]
Pfam domain/function: PF00815 Histidinol_dh [H]
EC number: =1.1.1.23 [H]
Molecular weight: Translated: 44637; Mature: 44637
Theoretical pI: Translated: 4.76; Mature: 4.76
Prosite motif: PS00611 HISOL_DEHYDROGENASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRRLDASAPGFAAQFDALVNDRRESASDVSADVAAIIARVKAEGDAALADYTAKFDRFDL CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCC DARGWSIAKKDCATAYQALAPDLRDALNLAADRIGAYHAAQLPEDRDYRDATGARLGARW CCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCC NAVDAAGVYVPGGRAAYPSSVLMNILPAKVAGVGRIVMVTPTPDGQVNPVVMAAAHIGGV CCCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEEEHHCCCH DEIWRVGGAQAIAALAHGTDRIAPVDVVTGPGNAWVAEAKRQLYGVVGIDMVAGPSEIVI HHHHHCCCHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHEEEEEECCCCEEEE VADNKNAPHVIAADLLSQAEHDPTSQSILFTDDGDFADAVAAAVADVIPTLATAATMLAS EECCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHH WTDNGVVIVVPTLADAIPLCDRLAPEHLELAVDPAEADALFARVRHAGSVFLGRQTPEAI CCCCCEEEEECCHHHHHHHHHHCCCCHHEEEECCHHHHHHHHHHHHCCCEEECCCCHHHH GDYVAGPNHVLPTGRRARFSSGLSVTDFMKRTSFLALDEASLAAIGPAAVALAGAEGLPA HHHCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHEEEECCCCHHHCCHHHHEEECCCCCCH HALSVQNRLK HHHHHHHHCC >Mature Secondary Structure MRRLDASAPGFAAQFDALVNDRRESASDVSADVAAIIARVKAEGDAALADYTAKFDRFDL CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCC DARGWSIAKKDCATAYQALAPDLRDALNLAADRIGAYHAAQLPEDRDYRDATGARLGARW CCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCC NAVDAAGVYVPGGRAAYPSSVLMNILPAKVAGVGRIVMVTPTPDGQVNPVVMAAAHIGGV CCCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEEEHHCCCH DEIWRVGGAQAIAALAHGTDRIAPVDVVTGPGNAWVAEAKRQLYGVVGIDMVAGPSEIVI HHHHHCCCHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHEEEEEECCCCEEEE VADNKNAPHVIAADLLSQAEHDPTSQSILFTDDGDFADAVAAAVADVIPTLATAATMLAS EECCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHH WTDNGVVIVVPTLADAIPLCDRLAPEHLELAVDPAEADALFARVRHAGSVFLGRQTPEAI CCCCCEEEEECCHHHHHHHHHHCCCCHHEEEECCHHHHHHHHHHHHCCCEEECCCCHHHH GDYVAGPNHVLPTGRRARFSSGLSVTDFMKRTSFLALDEASLAAIGPAAVALAGAEGLPA HHHCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHEEEECCCCHHHCCHHHHEEECCCCCCH HALSVQNRLK HHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA