| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
Click here to switch to the map view.
The map label for this gene is 103487475
Identifier: 103487475
GI number: 103487475
Start: 2101805
End: 2104129
Strand: Reverse
Name: 103487475
Synonym: Sala_1992
Alternate gene names: NA
Gene position: 2104129-2101805 (Counterclockwise)
Preceding gene: 103487476
Following gene: 103487474
Centisome position: 62.9
GC content: 71.05
Gene sequence:
>2325_bases ATGGGCTGGGCCCTGGTGGCGGCGGCCGAGCCGCATCATCGCAAGGGGTGGATCAAGCGGTTCGACCCGCGCTTCTGGAC GGTCGATTTTGCGCGGCCGATGATGGCGAGCGTGACGAGCGCGGCGCCGGGGGCGCTGCGCGTCGAGGCGGTCTTTTACC GCAAGCAGGATCTGGCGGGGCTGATCTGGGAGACGGCGGACCGGTGGGATCACCCGCTGCTCGCCTATGAAACGCGGCGT GATTTCCGGCACACGCAGCTCCTTTTCCGATGGCGGTCGGGCGGGGTGAAGCCGCTCGACGCGCTGCATGGCCCGACGCT GACGATCGAGGGGCGCGATGCGGGAGGCAATCCGCGCGCCTGGTATGTGCGGTTGTGGAACTATGCCGAGGGGAGTGCGG AGGATGCGGTGGTGACGCTCGATTTCGATGCGCTCGACGGCGGTTTCCTGCTTCCCGGCGAGGCGGATCCGGTGTGGGCG GGGGATGTCGACAGGATGTTCGTTTCGCTGGTGCCGCCGACCTATGACGGCGGCGAGGGCGATTTGGATGCGCCGGTCGA GGGCTGGGCCGAGATGAGCGACATCGTCTGCACCGGATCGGGTTCGGTGCTGGCGATCGGCGATGCGGTGCTCCCCGAAA CGGCGCTGGGCATGACCAACGGCTATGACGATTGCTATCACCTGACCCCGGCGCGCGTGGTGCGGCAGATCGTGCAATTG GGCTATCGCGGCGACGTCGTCCATTATGTCGGGATGAGCCATTATATGCGGCTGGCGCCGTCAGCCGCGGGCCTGCTCGC GGATGCGTCGGCGGGCGCGTTGAACGGTCCGTGCGCGGCCTGGCATCGCGATTTGGCCGCCGCGTGCGCGGCGGCGGGGC TGGGGCTGATCTGGTCGCTGTCCTATGAATTGTTCGACGCCTATTGCCCCGAGGACTGGAAGCAGCGCGACGCCGATGGC GCGCCCGCGCTGACCGGGTGGGAGCCGCCCTCGACCCTGCTGTCGCCGGCGAATGCGGCGGCGATGGCCTGGTTGCAGGC GGTCGCGCGGGCGTTCGTCGCGATCGGGCGCGATGCCGGGCTGGCGTGCAGGTTTCAGGTCGGCGAGCCCTGGTGGTGGA TCGCGGACGGGGGGCGCATCTGCGCCTATGACGCGGCGGCGTCGGCGGCGCTGGGCGGCGCGGGCGTGGCGATTGCCGAC GTGCGCGGGCCGCTCGACGCGGCGCAGCGGGCGATGCTCGATGCGCTGGGCGCCTTGCTCGCCGATTCGACCGCCGCGCT GGTCGCGGCGGCGCGGGAGGAGGCGGGTGCGGCGGGGCTGGTCAGCCACTTGCTCGTCTATCTGCCGACGGTGCTCGACC CGGCGGCGGCAGAGGTGCGGCGCGCCAATGTGCCGCTCGGCTGGGCGGCGCCGGCGTTCGACGTGCTCCAGCTAGAAGAT TATGACTGGGTGACCGGCGGGCGCAGCGGCGAGACCGCTGGCGCGCGCGCCGCGATGGCGCTGCGGCTCGGTTATCCCAT TGCAGAACAGCATTATTTTTCGGGGTTCGTGCTGCTGCCCGAACAGCGCGGCCGGTGGGCGGCGATCGCAGAGGCCGCCG ACGCGGCGCGGCGCGCGGGGGTGGCGCGGACCTTTATCTGGGCGCTGCCGCAGGTGGCGCGCGACGGCTTCACGGCCTTT GATGGGGAGGACAGGGTGCAGGCGTTCGATGCAGTGGATTTCCCGATTGCGATCGGGCGCGAGGCGGTGGCGCTGACCGA ATTTTCGACGCAGATCGTCAGCTCGCCATCGGGGCACGAACAGCGCGCGAGCGAATGGGCCGAGGCACGGATGCGCTATG ACGCCGGGCCGGGGATCAGGTCCGAGGCCGATGTGCGCGCGCTGACGGCGTTTTTCCGCGCGCGGCGCGGCGCGGCGCGC GCGTTCCGCTTTCGCGATCCGTTCGACAGCAGTTCGGCCGCCGATAACGGGCTGCCGACCGCCGAGGATCAGTGGCTGGG GACAGGCGACGGGGTGCGGCGGCAATTTGCGCTGGTGAAGCGTTATGGCGAAGGCGACGCCGAAGCGGTGCGGCCGATCC GCCTGCCGGTCGCGGGGAGCGTGCGCGTGTCGGTGGGTGGGATCGAGACGGCGGCGTTCCTGGTGACGGGCGAAGGCGAG GTGCTGCTCGACGCGGCGCCCGCCGAGGGCGCGGTAGTGCGGGCGGGATTCCGCTTCGACGTGCCGGTGCGCTTTGCCGA CGACCGGCTGGAGGTGAGCCGCGCGACCTTCCTCGCGGGCGAGCTGGCGAGCGTGCCGCTGGTCGAGGTGCGCGCGCCAT GGTGA
Upstream 100 bases:
>100_bases ATGTGCAGGGGCCGGCGGGCAATGATCCGCAGCGGCTGGCGCAGACGGGGCGGCAACTGGCGCGCGCGGTGCGGCGCGCG GTGGCGGCGGGGGAGGACTG
Downstream 100 bases:
>100_bases CGCCGGTGAGCCTGAACGCCGCGCCCGACTGGCTGCGCGCGGAGCTGGTGACGCTCGCCTGGTGCTGGCGCCTGTCGCGG CGCGACGGGGTGACGATCGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 774; Mature: 773
Protein sequence:
>774_residues MGWALVAAAEPHHRKGWIKRFDPRFWTVDFARPMMASVTSAAPGALRVEAVFYRKQDLAGLIWETADRWDHPLLAYETRR DFRHTQLLFRWRSGGVKPLDALHGPTLTIEGRDAGGNPRAWYVRLWNYAEGSAEDAVVTLDFDALDGGFLLPGEADPVWA GDVDRMFVSLVPPTYDGGEGDLDAPVEGWAEMSDIVCTGSGSVLAIGDAVLPETALGMTNGYDDCYHLTPARVVRQIVQL GYRGDVVHYVGMSHYMRLAPSAAGLLADASAGALNGPCAAWHRDLAAACAAAGLGLIWSLSYELFDAYCPEDWKQRDADG APALTGWEPPSTLLSPANAAAMAWLQAVARAFVAIGRDAGLACRFQVGEPWWWIADGGRICAYDAAASAALGGAGVAIAD VRGPLDAAQRAMLDALGALLADSTAALVAAAREEAGAAGLVSHLLVYLPTVLDPAAAEVRRANVPLGWAAPAFDVLQLED YDWVTGGRSGETAGARAAMALRLGYPIAEQHYFSGFVLLPEQRGRWAAIAEAADAARRAGVARTFIWALPQVARDGFTAF DGEDRVQAFDAVDFPIAIGREAVALTEFSTQIVSSPSGHEQRASEWAEARMRYDAGPGIRSEADVRALTAFFRARRGAAR AFRFRDPFDSSSAADNGLPTAEDQWLGTGDGVRRQFALVKRYGEGDAEAVRPIRLPVAGSVRVSVGGIETAAFLVTGEGE VLLDAAPAEGAVVRAGFRFDVPVRFADDRLEVSRATFLAGELASVPLVEVRAPW
Sequences:
>Translated_774_residues MGWALVAAAEPHHRKGWIKRFDPRFWTVDFARPMMASVTSAAPGALRVEAVFYRKQDLAGLIWETADRWDHPLLAYETRR DFRHTQLLFRWRSGGVKPLDALHGPTLTIEGRDAGGNPRAWYVRLWNYAEGSAEDAVVTLDFDALDGGFLLPGEADPVWA GDVDRMFVSLVPPTYDGGEGDLDAPVEGWAEMSDIVCTGSGSVLAIGDAVLPETALGMTNGYDDCYHLTPARVVRQIVQL GYRGDVVHYVGMSHYMRLAPSAAGLLADASAGALNGPCAAWHRDLAAACAAAGLGLIWSLSYELFDAYCPEDWKQRDADG APALTGWEPPSTLLSPANAAAMAWLQAVARAFVAIGRDAGLACRFQVGEPWWWIADGGRICAYDAAASAALGGAGVAIAD VRGPLDAAQRAMLDALGALLADSTAALVAAAREEAGAAGLVSHLLVYLPTVLDPAAAEVRRANVPLGWAAPAFDVLQLED YDWVTGGRSGETAGARAAMALRLGYPIAEQHYFSGFVLLPEQRGRWAAIAEAADAARRAGVARTFIWALPQVARDGFTAF DGEDRVQAFDAVDFPIAIGREAVALTEFSTQIVSSPSGHEQRASEWAEARMRYDAGPGIRSEADVRALTAFFRARRGAAR AFRFRDPFDSSSAADNGLPTAEDQWLGTGDGVRRQFALVKRYGEGDAEAVRPIRLPVAGSVRVSVGGIETAAFLVTGEGE VLLDAAPAEGAVVRAGFRFDVPVRFADDRLEVSRATFLAGELASVPLVEVRAPW >Mature_773_residues GWALVAAAEPHHRKGWIKRFDPRFWTVDFARPMMASVTSAAPGALRVEAVFYRKQDLAGLIWETADRWDHPLLAYETRRD FRHTQLLFRWRSGGVKPLDALHGPTLTIEGRDAGGNPRAWYVRLWNYAEGSAEDAVVTLDFDALDGGFLLPGEADPVWAG DVDRMFVSLVPPTYDGGEGDLDAPVEGWAEMSDIVCTGSGSVLAIGDAVLPETALGMTNGYDDCYHLTPARVVRQIVQLG YRGDVVHYVGMSHYMRLAPSAAGLLADASAGALNGPCAAWHRDLAAACAAAGLGLIWSLSYELFDAYCPEDWKQRDADGA PALTGWEPPSTLLSPANAAAMAWLQAVARAFVAIGRDAGLACRFQVGEPWWWIADGGRICAYDAAASAALGGAGVAIADV RGPLDAAQRAMLDALGALLADSTAALVAAAREEAGAAGLVSHLLVYLPTVLDPAAAEVRRANVPLGWAAPAFDVLQLEDY DWVTGGRSGETAGARAAMALRLGYPIAEQHYFSGFVLLPEQRGRWAAIAEAADAARRAGVARTFIWALPQVARDGFTAFD GEDRVQAFDAVDFPIAIGREAVALTEFSTQIVSSPSGHEQRASEWAEARMRYDAGPGIRSEADVRALTAFFRARRGAARA FRFRDPFDSSSAADNGLPTAEDQWLGTGDGVRRQFALVKRYGEGDAEAVRPIRLPVAGSVRVSVGGIETAAFLVTGEGEV LLDAAPAEGAVVRAGFRFDVPVRFADDRLEVSRATFLAGELASVPLVEVRAPW
Specific function: Unknown
COG id: COG5448
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 82838; Mature: 82707
Theoretical pI: Translated: 4.70; Mature: 4.70
Prosite motif: PS00143 INSULINASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGWALVAAAEPHHRKGWIKRFDPRFWTVDFARPMMASVTSAAPGALRVEAVFYRKQDLAG CCEEEEEECCCCHHCCCHHHCCCCEEEEEHHHHHHHHHHCCCCCCEEEEEEEEEHHHHHH LIWETADRWDHPLLAYETRRDFRHTQLLFRWRSGGVKPLDALHGPTLTIEGRDAGGNPRA HHHHHHHHCCCCEEEEHHHHHHHHHHHHHHECCCCCCCHHHHCCCEEEEECCCCCCCCCE WYVRLWNYAEGSAEDAVVTLDFDALDGGFLLPGEADPVWAGDVDRMFVSLVPPTYDGGEG EEEEEEECCCCCCCCEEEEEEEECCCCCEECCCCCCCCCCCCHHHHHHEECCCCCCCCCC DLDAPVEGWAEMSDIVCTGSGSVLAIGDAVLPETALGMTNGYDDCYHLTPARVVRQIVQL CCCCCHHHHHHHCCEEEECCCCEEEECCCCCCHHHHCCCCCCCCCEECCHHHHHHHHHHC GYRGDVVHYVGMSHYMRLAPSAAGLLADASAGALNGPCAAWHRDLAAACAAAGLGLIWSL CCCCCEEEEHHHHHHHHHCCCHHHHEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH SYELFDAYCPEDWKQRDADGAPALTGWEPPSTLLSPANAAAMAWLQAVARAFVAIGRDAG HHHHHHHCCCCHHHHCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHCCCCC LACRFQVGEPWWWIADGGRICAYDAAASAALGGAGVAIADVRGPLDAAQRAMLDALGALL EEEEEEECCCEEEEECCCEEEEECCHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHH ADSTAALVAAAREEAGAAGLVSHLLVYLPTVLDPAAAEVRRANVPLGWAAPAFDVLQLED HCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCEEEEECC YDWVTGGRSGETAGARAAMALRLGYPIAEQHYFSGFVLLPEQRGRWAAIAEAADAARRAG CCEECCCCCCCCCCHHHEEEEEECCCHHHHHHCCCEEEEECCCCCEEHHHHHHHHHHHHC VARTFIWALPQVARDGFTAFDGEDRVQAFDAVDFPIAIGREAVALTEFSTQIVSSPSGHE HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCHHCCCCEEEHHHHHHHHHCCCCCCH QRASEWAEARMRYDAGPGIRSEADVRALTAFFRARRGAARAFRFRDPFDSSSAADNGLPT HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCHHHEEECCCCCCCCCCCCCCCCC AEDQWLGTGDGVRRQFALVKRYGEGDAEAVRPIRLPVAGSVRVSVGGIETAAFLVTGEGE CCCCCCCCCHHHHHHHHHHHHCCCCCHHHCCEEEECCCCCEEEEECCEEEEEEEEECCCC VLLDAAPAEGAVVRAGFRFDVPVRFADDRLEVSRATFLAGELASVPLVEVRAPW EEEECCCCCCCEEEECEEECCCEEECCCHHHHHHHHHHHHHHCCCCEEEEECCC >Mature Secondary Structure GWALVAAAEPHHRKGWIKRFDPRFWTVDFARPMMASVTSAAPGALRVEAVFYRKQDLAG CEEEEEECCCCHHCCCHHHCCCCEEEEEHHHHHHHHHHCCCCCCEEEEEEEEEHHHHHH LIWETADRWDHPLLAYETRRDFRHTQLLFRWRSGGVKPLDALHGPTLTIEGRDAGGNPRA HHHHHHHHCCCCEEEEHHHHHHHHHHHHHHECCCCCCCHHHHCCCEEEEECCCCCCCCCE WYVRLWNYAEGSAEDAVVTLDFDALDGGFLLPGEADPVWAGDVDRMFVSLVPPTYDGGEG EEEEEEECCCCCCCCEEEEEEEECCCCCEECCCCCCCCCCCCHHHHHHEECCCCCCCCCC DLDAPVEGWAEMSDIVCTGSGSVLAIGDAVLPETALGMTNGYDDCYHLTPARVVRQIVQL CCCCCHHHHHHHCCEEEECCCCEEEECCCCCCHHHHCCCCCCCCCEECCHHHHHHHHHHC GYRGDVVHYVGMSHYMRLAPSAAGLLADASAGALNGPCAAWHRDLAAACAAAGLGLIWSL CCCCCEEEEHHHHHHHHHCCCHHHHEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH SYELFDAYCPEDWKQRDADGAPALTGWEPPSTLLSPANAAAMAWLQAVARAFVAIGRDAG HHHHHHHCCCCHHHHCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHCCCCC LACRFQVGEPWWWIADGGRICAYDAAASAALGGAGVAIADVRGPLDAAQRAMLDALGALL EEEEEEECCCEEEEECCCEEEEECCHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHH ADSTAALVAAAREEAGAAGLVSHLLVYLPTVLDPAAAEVRRANVPLGWAAPAFDVLQLED HCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCEEEEECC YDWVTGGRSGETAGARAAMALRLGYPIAEQHYFSGFVLLPEQRGRWAAIAEAADAARRAG CCEECCCCCCCCCCHHHEEEEEECCCHHHHHHCCCEEEEECCCCCEEHHHHHHHHHHHHC VARTFIWALPQVARDGFTAFDGEDRVQAFDAVDFPIAIGREAVALTEFSTQIVSSPSGHE HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCHHCCCCEEEHHHHHHHHHCCCCCCH QRASEWAEARMRYDAGPGIRSEADVRALTAFFRARRGAARAFRFRDPFDSSSAADNGLPT HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCHHHEEECCCCCCCCCCCCCCCCC AEDQWLGTGDGVRRQFALVKRYGEGDAEAVRPIRLPVAGSVRVSVGGIETAAFLVTGEGE CCCCCCCCCHHHHHHHHHHHHCCCCCHHHCCEEEECCCCCEEEEECCEEEEEEEEECCCC VLLDAAPAEGAVVRAGFRFDVPVRFADDRLEVSRATFLAGELASVPLVEVRAPW EEEECCCCCCCEEEECEEECCCEEECCCHHHHHHHHHHHHHHCCCCEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA