Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

Click here to switch to the map view.

The map label for this gene is 103487474

Identifier: 103487474

GI number: 103487474

Start: 2100978

End: 2101811

Strand: Reverse

Name: 103487474

Synonym: Sala_1991

Alternate gene names: NA

Gene position: 2101811-2100978 (Counterclockwise)

Preceding gene: 103487475

Following gene: 103487473

Centisome position: 62.83

GC content: 72.42

Gene sequence:

>834_bases
ATGGTGACGCCGGTGAGCCTGAACGCCGCGCCCGACTGGCTGCGCGCGGAGCTGGTGACGCTCGCCTGGTGCTGGCGCCT
GTCGCGGCGCGACGGGGTGACGATCGGGCTGACCTCGCACGACCGCGACCTGCTGATTGACGGGCTGGTCTATCGCGCGG
CGCCGGGGATGAAACCGTCGGCGATCGAGACGCGCGACAGCCTGGACGCGGCGACGATGGACATCGAGGGCGCGATCGCG
AGCGATGCGATCGCGGCGCGCGACCTCGACGCCGGGCGCTGGGACGGGGCGGAGCTGGAACTGTTCCTGACCGACTGGAC
GGCGCCCGCAGCGGCGCCGGTCACGGTCGCGCGCGGATCGCTGGGCTCGGTCGAGCGGCGCGGCGCGGGGTTTTCGGCCG
AACTCAAAGGCGTGACGCAGCTGCTCGACCGGCCGGTGTGCCCGGCGACGTCGCCGTCGTGCCGCGCGACGCTGGGCGAC
CGTGCGTGCCGGGTCGATCTGGCGCCGCGCACGCATGCCCGGCGTGTTGTCGCGGTCGCGGGGCGCGTCGTGACGCTCGA
TGCCGCCGCGCCGCATATGGCGTTTGGCGAATTGCTGTGGATCGAGGGCGCCAATTGCGGGCTGGCGAGCCCGGTGAGCG
CCGCCGAGGGGGCCGAGTTGCATTTGGCCGAAGCGCCGCCCTTTGCACCGGACGCGCCGGTGCGCGTGCGGCTGACCGAA
GGGTGCGACAAGCGGCTGGCGACCTGCCGCGACCGTTTTGCCAATGCGGTCAATTTTCGCGGCGAGGCGCATCTGCCGGG
CAATGATCTGCTGACGCGCTATCCGGGTGGATAG

Upstream 100 bases:

>100_bases
ACGTGCCGGTGCGCTTTGCCGACGACCGGCTGGAGGTGAGCCGCGCGACCTTCCTCGCGGGCGAGCTGGCGAGCGTGCCG
CTGGTCGAGGTGCGCGCGCC

Downstream 100 bases:

>100_bases
GGTCGGCGCGCGCGCTTTCGCGGCGGCGCGGGCGATGGTCGGGGCGCGGTTCCGCTTTCAGGGACGCGATCCGGCGGCGG
GGCTCGATTGCGTCGGGCTG

Product: phage protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 277; Mature: 277

Protein sequence:

>277_residues
MVTPVSLNAAPDWLRAELVTLAWCWRLSRRDGVTIGLTSHDRDLLIDGLVYRAAPGMKPSAIETRDSLDAATMDIEGAIA
SDAIAARDLDAGRWDGAELELFLTDWTAPAAAPVTVARGSLGSVERRGAGFSAELKGVTQLLDRPVCPATSPSCRATLGD
RACRVDLAPRTHARRVVAVAGRVVTLDAAAPHMAFGELLWIEGANCGLASPVSAAEGAELHLAEAPPFAPDAPVRVRLTE
GCDKRLATCRDRFANAVNFRGEAHLPGNDLLTRYPGG

Sequences:

>Translated_277_residues
MVTPVSLNAAPDWLRAELVTLAWCWRLSRRDGVTIGLTSHDRDLLIDGLVYRAAPGMKPSAIETRDSLDAATMDIEGAIA
SDAIAARDLDAGRWDGAELELFLTDWTAPAAAPVTVARGSLGSVERRGAGFSAELKGVTQLLDRPVCPATSPSCRATLGD
RACRVDLAPRTHARRVVAVAGRVVTLDAAAPHMAFGELLWIEGANCGLASPVSAAEGAELHLAEAPPFAPDAPVRVRLTE
GCDKRLATCRDRFANAVNFRGEAHLPGNDLLTRYPGG
>Mature_277_residues
MVTPVSLNAAPDWLRAELVTLAWCWRLSRRDGVTIGLTSHDRDLLIDGLVYRAAPGMKPSAIETRDSLDAATMDIEGAIA
SDAIAARDLDAGRWDGAELELFLTDWTAPAAAPVTVARGSLGSVERRGAGFSAELKGVTQLLDRPVCPATSPSCRATLGD
RACRVDLAPRTHARRVVAVAGRVVTLDAAAPHMAFGELLWIEGANCGLASPVSAAEGAELHLAEAPPFAPDAPVRVRLTE
GCDKRLATCRDRFANAVNFRGEAHLPGNDLLTRYPGG

Specific function: Unknown

COG id: COG5449

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29337; Mature: 29337

Theoretical pI: Translated: 5.69; Mature: 5.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVTPVSLNAAPDWLRAELVTLAWCWRLSRRDGVTIGLTSHDRDLLIDGLVYRAAPGMKPS
CCCCEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCC
AIETRDSLDAATMDIEGAIASDAIAARDLDAGRWDGAELELFLTDWTAPAAAPVTVARGS
CCCCHHCCCCEEEEECCCHHHCHHHHCCCCCCCCCCCEEEEEEEECCCCCCCCEEEECCC
LGSVERRGAGFSAELKGVTQLLDRPVCPATSPSCRATLGDRACRVDLAPRTHARRVVAVA
CCCHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCEEEEECCCCHHHHEEEEEC
GRVVTLDAAAPHMAFGELLWIEGANCGLASPVSAAEGAELHLAEAPPFAPDAPVRVRLTE
CEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEEEECC
GCDKRLATCRDRFANAVNFRGEAHLPGNDLLTRYPGG
CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MVTPVSLNAAPDWLRAELVTLAWCWRLSRRDGVTIGLTSHDRDLLIDGLVYRAAPGMKPS
CCCCEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCC
AIETRDSLDAATMDIEGAIASDAIAARDLDAGRWDGAELELFLTDWTAPAAAPVTVARGS
CCCCHHCCCCEEEEECCCHHHCHHHHCCCCCCCCCCCEEEEEEEECCCCCCCCEEEECCC
LGSVERRGAGFSAELKGVTQLLDRPVCPATSPSCRATLGDRACRVDLAPRTHARRVVAVA
CCCHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCEEEEECCCCHHHHEEEEEC
GRVVTLDAAAPHMAFGELLWIEGANCGLASPVSAAEGAELHLAEAPPFAPDAPVRVRLTE
CEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEEEECC
GCDKRLATCRDRFANAVNFRGEAHLPGNDLLTRYPGG
CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA