Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103487453

Identifier: 103487453

GI number: 103487453

Start: 2077550

End: 2078377

Strand: Reverse

Name: 103487453

Synonym: Sala_1969

Alternate gene names: NA

Gene position: 2078377-2077550 (Counterclockwise)

Preceding gene: 103487455

Following gene: 103487450

Centisome position: 62.13

GC content: 67.63

Gene sequence:

>828_bases
GTGGGCGTGGCGCGGTTATCGCCTTGGGCCATGAGCGATGCCGTTTTGCCGTCCGCGCCCGAGGCGATGCTGCCCGACGG
CGCTATTCCCGCCGCGACGCTGGTTATCATGCGACCGTCCGAAGGCGGCGGCCCCGACGAGATTTTGATGGTCAAGCGAT
CGGCGAACATGGCTTTCGCGGCGGGGGCGGTCGTATTTCCCGGTGGCCGTGTCGATCCCGACGACCATGAGGTCGCGCGC
CGCCACGGAGCAGGCATCGATCCGGCAGACGGCGCCGCGCGCGTTGCGGCGCTCCGCGAGACGCTGGAGGAAACGGGGCT
CGCGGTCGGCTGGCCCGGCCTTGCCGAAACGGAGGTCGCCGAGGTGCGCCGCGCCCTGCTCGGCGGGACGTTGCTGTCCG
ACATACTGGCGGCGCGCGATGAGCGAATCGCATTGGAATCGCTCGTTCCTTTCGCGCGCTGGTGCCCCAATTTCAAGGAA
GCACGCACCTTCGACACGCGCTTCTATGCCGTCGCCGCCCCGCCGCACAGCCACGAACTCACCGTCGAGGAGGCCGAACA
CAGCCATATTTTCTGGGCGAGCGCCGCGGCGACGCTGGCGATGGCCGACCGCGGCGAGGTGTCGGTCATCTTCCCGACGC
GCCGCAATCTCGAACGGCTGGCGCAGGCGCCCGACTTCCCGAGCTTTTCGGCGCATTCATGTGCATATCCGGTCGAACTG
ATCACGCCGTGGATCGAGGATCGCGATGGTCGGTCCCATCTGTGCATTCCCGATCATCTGGGCTATCCGGTGACCAGCGA
GGCCTTTGAGCGGGTGCGGCGTGGGTGA

Upstream 100 bases:

>100_bases
AAATCTCGACGATTCCCAATGGCCCGCTCCCCCGCCCATGGTGTTGCGCCGGGCCGCATCTTGCACCCTTGGCCGGGCAG
CCGCAATGGCGGGATGACAA

Downstream 100 bases:

>100_bases
GAAACCGGCAACAAGTTTTCATCTGTTTATAATTTACTAAGATTTCAGGGGGTAGGGCAAAACGTCGTTGCAATTGCCGA
AGCCCGTGCGTAAGAAGGCC

Product: NUDIX hydrolase

Products: NA

Alternate protein names: NUDIX Family Hydrolase; NUDIX Family Protein

Number of amino acids: Translated: 275; Mature: 274

Protein sequence:

>275_residues
MGVARLSPWAMSDAVLPSAPEAMLPDGAIPAATLVIMRPSEGGGPDEILMVKRSANMAFAAGAVVFPGGRVDPDDHEVAR
RHGAGIDPADGAARVAALRETLEETGLAVGWPGLAETEVAEVRRALLGGTLLSDILAARDERIALESLVPFARWCPNFKE
ARTFDTRFYAVAAPPHSHELTVEEAEHSHIFWASAAATLAMADRGEVSVIFPTRRNLERLAQAPDFPSFSAHSCAYPVEL
ITPWIEDRDGRSHLCIPDHLGYPVTSEAFERVRRG

Sequences:

>Translated_275_residues
MGVARLSPWAMSDAVLPSAPEAMLPDGAIPAATLVIMRPSEGGGPDEILMVKRSANMAFAAGAVVFPGGRVDPDDHEVAR
RHGAGIDPADGAARVAALRETLEETGLAVGWPGLAETEVAEVRRALLGGTLLSDILAARDERIALESLVPFARWCPNFKE
ARTFDTRFYAVAAPPHSHELTVEEAEHSHIFWASAAATLAMADRGEVSVIFPTRRNLERLAQAPDFPSFSAHSCAYPVEL
ITPWIEDRDGRSHLCIPDHLGYPVTSEAFERVRRG
>Mature_274_residues
GVARLSPWAMSDAVLPSAPEAMLPDGAIPAATLVIMRPSEGGGPDEILMVKRSANMAFAAGAVVFPGGRVDPDDHEVARR
HGAGIDPADGAARVAALRETLEETGLAVGWPGLAETEVAEVRRALLGGTLLSDILAARDERIALESLVPFARWCPNFKEA
RTFDTRFYAVAAPPHSHELTVEEAEHSHIFWASAAATLAMADRGEVSVIFPTRRNLERLAQAPDFPSFSAHSCAYPVELI
TPWIEDRDGRSHLCIPDHLGYPVTSEAFERVRRG

Specific function: Unknown

COG id: COG0494

COG function: function code LR; NTP pyrophosphohydrolases including oxidative damage repair enzymes

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29648; Mature: 29517

Theoretical pI: Translated: 4.94; Mature: 4.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGVARLSPWAMSDAVLPSAPEAMLPDGAIPAATLVIMRPSEGGGPDEILMVKRSANMAFA
CCCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEEEEEECCCCCCCCCEEEEEEECCCEEEE
AGAVVFPGGRVDPDDHEVARRHGAGIDPADGAARVAALRETLEETGLAVGWPGLAETEVA
CCEEECCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCEEECCCCCHHHHH
EVRRALLGGTLLSDILAARDERIALESLVPFARWCPNFKEARTFDTRFYAVAAPPHSHEL
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHCEECCEEEEEECCCCCCCE
TVEEAEHSHIFWASAAATLAMADRGEVSVIFPTRRNLERLAQAPDFPSFSAHSCAYPVEL
EEECCCCCEEEEEHHHHHHEECCCCCEEEEECCHHHHHHHHCCCCCCCCCCCCCCCCHHH
ITPWIEDRDGRSHLCIPDHLGYPVTSEAFERVRRG
HHHHHCCCCCCCCEECHHHCCCCCCHHHHHHHHCC
>Mature Secondary Structure 
GVARLSPWAMSDAVLPSAPEAMLPDGAIPAATLVIMRPSEGGGPDEILMVKRSANMAFA
CCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEEEEEECCCCCCCCCEEEEEEECCCEEEE
AGAVVFPGGRVDPDDHEVARRHGAGIDPADGAARVAALRETLEETGLAVGWPGLAETEVA
CCEEECCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCEEECCCCCHHHHH
EVRRALLGGTLLSDILAARDERIALESLVPFARWCPNFKEARTFDTRFYAVAAPPHSHEL
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHCEECCEEEEEECCCCCCCE
TVEEAEHSHIFWASAAATLAMADRGEVSVIFPTRRNLERLAQAPDFPSFSAHSCAYPVEL
EEECCCCCEEEEEHHHHHHEECCCCCEEEEECCHHHHHHHHCCCCCCCCCCCCCCCCHHH
ITPWIEDRDGRSHLCIPDHLGYPVTSEAFERVRRG
HHHHHCCCCCCCCEECHHHCCCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA