| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
Click here to switch to the map view.
The map label for this gene is 103487453
Identifier: 103487453
GI number: 103487453
Start: 2077550
End: 2078377
Strand: Reverse
Name: 103487453
Synonym: Sala_1969
Alternate gene names: NA
Gene position: 2078377-2077550 (Counterclockwise)
Preceding gene: 103487455
Following gene: 103487450
Centisome position: 62.13
GC content: 67.63
Gene sequence:
>828_bases GTGGGCGTGGCGCGGTTATCGCCTTGGGCCATGAGCGATGCCGTTTTGCCGTCCGCGCCCGAGGCGATGCTGCCCGACGG CGCTATTCCCGCCGCGACGCTGGTTATCATGCGACCGTCCGAAGGCGGCGGCCCCGACGAGATTTTGATGGTCAAGCGAT CGGCGAACATGGCTTTCGCGGCGGGGGCGGTCGTATTTCCCGGTGGCCGTGTCGATCCCGACGACCATGAGGTCGCGCGC CGCCACGGAGCAGGCATCGATCCGGCAGACGGCGCCGCGCGCGTTGCGGCGCTCCGCGAGACGCTGGAGGAAACGGGGCT CGCGGTCGGCTGGCCCGGCCTTGCCGAAACGGAGGTCGCCGAGGTGCGCCGCGCCCTGCTCGGCGGGACGTTGCTGTCCG ACATACTGGCGGCGCGCGATGAGCGAATCGCATTGGAATCGCTCGTTCCTTTCGCGCGCTGGTGCCCCAATTTCAAGGAA GCACGCACCTTCGACACGCGCTTCTATGCCGTCGCCGCCCCGCCGCACAGCCACGAACTCACCGTCGAGGAGGCCGAACA CAGCCATATTTTCTGGGCGAGCGCCGCGGCGACGCTGGCGATGGCCGACCGCGGCGAGGTGTCGGTCATCTTCCCGACGC GCCGCAATCTCGAACGGCTGGCGCAGGCGCCCGACTTCCCGAGCTTTTCGGCGCATTCATGTGCATATCCGGTCGAACTG ATCACGCCGTGGATCGAGGATCGCGATGGTCGGTCCCATCTGTGCATTCCCGATCATCTGGGCTATCCGGTGACCAGCGA GGCCTTTGAGCGGGTGCGGCGTGGGTGA
Upstream 100 bases:
>100_bases AAATCTCGACGATTCCCAATGGCCCGCTCCCCCGCCCATGGTGTTGCGCCGGGCCGCATCTTGCACCCTTGGCCGGGCAG CCGCAATGGCGGGATGACAA
Downstream 100 bases:
>100_bases GAAACCGGCAACAAGTTTTCATCTGTTTATAATTTACTAAGATTTCAGGGGGTAGGGCAAAACGTCGTTGCAATTGCCGA AGCCCGTGCGTAAGAAGGCC
Product: NUDIX hydrolase
Products: NA
Alternate protein names: NUDIX Family Hydrolase; NUDIX Family Protein
Number of amino acids: Translated: 275; Mature: 274
Protein sequence:
>275_residues MGVARLSPWAMSDAVLPSAPEAMLPDGAIPAATLVIMRPSEGGGPDEILMVKRSANMAFAAGAVVFPGGRVDPDDHEVAR RHGAGIDPADGAARVAALRETLEETGLAVGWPGLAETEVAEVRRALLGGTLLSDILAARDERIALESLVPFARWCPNFKE ARTFDTRFYAVAAPPHSHELTVEEAEHSHIFWASAAATLAMADRGEVSVIFPTRRNLERLAQAPDFPSFSAHSCAYPVEL ITPWIEDRDGRSHLCIPDHLGYPVTSEAFERVRRG
Sequences:
>Translated_275_residues MGVARLSPWAMSDAVLPSAPEAMLPDGAIPAATLVIMRPSEGGGPDEILMVKRSANMAFAAGAVVFPGGRVDPDDHEVAR RHGAGIDPADGAARVAALRETLEETGLAVGWPGLAETEVAEVRRALLGGTLLSDILAARDERIALESLVPFARWCPNFKE ARTFDTRFYAVAAPPHSHELTVEEAEHSHIFWASAAATLAMADRGEVSVIFPTRRNLERLAQAPDFPSFSAHSCAYPVEL ITPWIEDRDGRSHLCIPDHLGYPVTSEAFERVRRG >Mature_274_residues GVARLSPWAMSDAVLPSAPEAMLPDGAIPAATLVIMRPSEGGGPDEILMVKRSANMAFAAGAVVFPGGRVDPDDHEVARR HGAGIDPADGAARVAALRETLEETGLAVGWPGLAETEVAEVRRALLGGTLLSDILAARDERIALESLVPFARWCPNFKEA RTFDTRFYAVAAPPHSHELTVEEAEHSHIFWASAAATLAMADRGEVSVIFPTRRNLERLAQAPDFPSFSAHSCAYPVELI TPWIEDRDGRSHLCIPDHLGYPVTSEAFERVRRG
Specific function: Unknown
COG id: COG0494
COG function: function code LR; NTP pyrophosphohydrolases including oxidative damage repair enzymes
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29648; Mature: 29517
Theoretical pI: Translated: 4.94; Mature: 4.94
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGVARLSPWAMSDAVLPSAPEAMLPDGAIPAATLVIMRPSEGGGPDEILMVKRSANMAFA CCCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEEEEEECCCCCCCCCEEEEEEECCCEEEE AGAVVFPGGRVDPDDHEVARRHGAGIDPADGAARVAALRETLEETGLAVGWPGLAETEVA CCEEECCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCEEECCCCCHHHHH EVRRALLGGTLLSDILAARDERIALESLVPFARWCPNFKEARTFDTRFYAVAAPPHSHEL HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHCEECCEEEEEECCCCCCCE TVEEAEHSHIFWASAAATLAMADRGEVSVIFPTRRNLERLAQAPDFPSFSAHSCAYPVEL EEECCCCCEEEEEHHHHHHEECCCCCEEEEECCHHHHHHHHCCCCCCCCCCCCCCCCHHH ITPWIEDRDGRSHLCIPDHLGYPVTSEAFERVRRG HHHHHCCCCCCCCEECHHHCCCCCCHHHHHHHHCC >Mature Secondary Structure GVARLSPWAMSDAVLPSAPEAMLPDGAIPAATLVIMRPSEGGGPDEILMVKRSANMAFA CCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEEEEEECCCCCCCCCEEEEEEECCCEEEE AGAVVFPGGRVDPDDHEVARRHGAGIDPADGAARVAALRETLEETGLAVGWPGLAETEVA CCEEECCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCEEECCCCCHHHHH EVRRALLGGTLLSDILAARDERIALESLVPFARWCPNFKEARTFDTRFYAVAAPPHSHEL HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHCEECCEEEEEECCCCCCCE TVEEAEHSHIFWASAAATLAMADRGEVSVIFPTRRNLERLAQAPDFPSFSAHSCAYPVEL EEECCCCCEEEEEHHHHHHEECCCCCEEEEECCHHHHHHHHCCCCCCCCCCCCCCCCHHH ITPWIEDRDGRSHLCIPDHLGYPVTSEAFERVRRG HHHHHCCCCCCCCEECHHHCCCCCCHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA