| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is cdsA [H]
Identifier: 103487439
GI number: 103487439
Start: 2062393
End: 2063058
Strand: Reverse
Name: cdsA [H]
Synonym: Sala_1955
Alternate gene names: 103487439
Gene position: 2063058-2062393 (Counterclockwise)
Preceding gene: 103487440
Following gene: 103487438
Centisome position: 61.67
GC content: 69.37
Gene sequence:
>666_bases ATGGCGGCAAAATCGGACCTTTGGGTGCGGGTGGGATCGGCGATCATATTGTTTGCGATTGCGGGGACCGCGCTGTGGTT CGGCGGCATCGCGTTCGGGCTGCTGCTGCTTGTCGGCGGCGCGCTCGTTCTCGTCGAATGGCTCGCGCTGGTGCGCGCGA TGGCGATTGGTGGCGGGTCGAAGGCAGCGCTGACGATCATTGGCCCGGTGCTCATCCTCGGCGCGGCCGCGGGCCTGTGG TTCGTTCGCGACCAGCTCGGCATGACGGCCGCGCTGTGGGTCTTTGGCATGGTCTGGGCGACCGACATCGGCGCCTATTT TGCCGGGCGTTCCTTTGGCGGCGCGCGGCTGGCGCCGACGATCAGCCCGTCGAAGACCTGGTCGGGCCTGTTCGGCGGCA TGGTCGCGGCGCTGATCGCCAGCGCGACGATCGGCGACCGCGCGGGCATCGTCGGCGTGCCGCTGTGGATCGGCCTGTTC ATGGGCCTGCTCGCGCAAATGGGCGATCTCGCGCAAAGCTGGATGAAGCGCCGCGCTGGGGTGAAGGATTCGGGCAAGCT GATCCCCGGCCACGGCGGCCTGTTCGATCGCGTCGACGGTTTGCTGCCGGTCGCGCTGCTGCTCGGCGCGCTGGCGTTCG CGGGCCAGATCGGGGCGCGCGGCTGA
Upstream 100 bases:
>100_bases ATTTCACCGAAAAGCTGTGGCCGGATTTTACCCCGGCGGACCTGAAAGCGGCGCTGGATCAATTTGCACGGCGCGATCGC CGGTACGGGGGGCTTTGACG
Downstream 100 bases:
>100_bases CATGACGCGCCGTCTCTCCCTCTTCGGCGCCACGGGATCGGTCGGGCAATCGACGCTCGACCTTGTCCGCCGCGACCGCG AGGCGTGGCGCGTCGGGGTG
Product: phosphatidate cytidylyltransferase
Products: NA
Alternate protein names: CDP-DAG synthase; CDP-DG synthase; CDP-diacylglycerol synthase; CDS; CDP-diglyceride pyrophosphorylase; CDP-diglyceride synthase; CTP:phosphatidate cytidylyltransferase [H]
Number of amino acids: Translated: 221; Mature: 220
Protein sequence:
>221_residues MAAKSDLWVRVGSAIILFAIAGTALWFGGIAFGLLLLVGGALVLVEWLALVRAMAIGGGSKAALTIIGPVLILGAAAGLW FVRDQLGMTAALWVFGMVWATDIGAYFAGRSFGGARLAPTISPSKTWSGLFGGMVAALIASATIGDRAGIVGVPLWIGLF MGLLAQMGDLAQSWMKRRAGVKDSGKLIPGHGGLFDRVDGLLPVALLLGALAFAGQIGARG
Sequences:
>Translated_221_residues MAAKSDLWVRVGSAIILFAIAGTALWFGGIAFGLLLLVGGALVLVEWLALVRAMAIGGGSKAALTIIGPVLILGAAAGLW FVRDQLGMTAALWVFGMVWATDIGAYFAGRSFGGARLAPTISPSKTWSGLFGGMVAALIASATIGDRAGIVGVPLWIGLF MGLLAQMGDLAQSWMKRRAGVKDSGKLIPGHGGLFDRVDGLLPVALLLGALAFAGQIGARG >Mature_220_residues AAKSDLWVRVGSAIILFAIAGTALWFGGIAFGLLLLVGGALVLVEWLALVRAMAIGGGSKAALTIIGPVLILGAAAGLWF VRDQLGMTAALWVFGMVWATDIGAYFAGRSFGGARLAPTISPSKTWSGLFGGMVAALIASATIGDRAGIVGVPLWIGLFM GLLAQMGDLAQSWMKRRAGVKDSGKLIPGHGGLFDRVDGLLPVALLLGALAFAGQIGARG
Specific function: Phospholipid biosynthesis. [C]
COG id: COG0575
COG function: function code I; CDP-diglyceride synthetase
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the CDS family [H]
Homologues:
Organism=Escherichia coli, GI87081696, Length=172, Percent_Identity=39.5348837209302, Blast_Score=97, Evalue=6e-22, Organism=Escherichia coli, GI1787677, Length=105, Percent_Identity=44.7619047619048, Blast_Score=86, Evalue=1e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000374 [H]
Pfam domain/function: PF01148 CTP_transf_1 [H]
EC number: =2.7.7.41 [H]
Molecular weight: Translated: 22575; Mature: 22444
Theoretical pI: Translated: 11.28; Mature: 11.28
Prosite motif: PS01315 CDS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAAKSDLWVRVGSAIILFAIAGTALWFGGIAFGLLLLVGGALVLVEWLALVRAMAIGGGS CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC KAALTIIGPVLILGAAAGLWFVRDQLGMTAALWVFGMVWATDIGAYFAGRSFGGARLAPT CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC ISPSKTWSGLFGGMVAALIASATIGDRAGIVGVPLWIGLFMGLLAQMGDLAQSWMKRRAG CCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC VKDSGKLIPGHGGLFDRVDGLLPVALLLGALAFAGQIGARG CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure AAKSDLWVRVGSAIILFAIAGTALWFGGIAFGLLLLVGGALVLVEWLALVRAMAIGGGS CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC KAALTIIGPVLILGAAAGLWFVRDQLGMTAALWVFGMVWATDIGAYFAGRSFGGARLAPT CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC ISPSKTWSGLFGGMVAALIASATIGDRAGIVGVPLWIGLFMGLLAQMGDLAQSWMKRRAG CCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC VKDSGKLIPGHGGLFDRVDGLLPVALLLGALAFAGQIGARG CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]