Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is cdsA [H]

Identifier: 103487439

GI number: 103487439

Start: 2062393

End: 2063058

Strand: Reverse

Name: cdsA [H]

Synonym: Sala_1955

Alternate gene names: 103487439

Gene position: 2063058-2062393 (Counterclockwise)

Preceding gene: 103487440

Following gene: 103487438

Centisome position: 61.67

GC content: 69.37

Gene sequence:

>666_bases
ATGGCGGCAAAATCGGACCTTTGGGTGCGGGTGGGATCGGCGATCATATTGTTTGCGATTGCGGGGACCGCGCTGTGGTT
CGGCGGCATCGCGTTCGGGCTGCTGCTGCTTGTCGGCGGCGCGCTCGTTCTCGTCGAATGGCTCGCGCTGGTGCGCGCGA
TGGCGATTGGTGGCGGGTCGAAGGCAGCGCTGACGATCATTGGCCCGGTGCTCATCCTCGGCGCGGCCGCGGGCCTGTGG
TTCGTTCGCGACCAGCTCGGCATGACGGCCGCGCTGTGGGTCTTTGGCATGGTCTGGGCGACCGACATCGGCGCCTATTT
TGCCGGGCGTTCCTTTGGCGGCGCGCGGCTGGCGCCGACGATCAGCCCGTCGAAGACCTGGTCGGGCCTGTTCGGCGGCA
TGGTCGCGGCGCTGATCGCCAGCGCGACGATCGGCGACCGCGCGGGCATCGTCGGCGTGCCGCTGTGGATCGGCCTGTTC
ATGGGCCTGCTCGCGCAAATGGGCGATCTCGCGCAAAGCTGGATGAAGCGCCGCGCTGGGGTGAAGGATTCGGGCAAGCT
GATCCCCGGCCACGGCGGCCTGTTCGATCGCGTCGACGGTTTGCTGCCGGTCGCGCTGCTGCTCGGCGCGCTGGCGTTCG
CGGGCCAGATCGGGGCGCGCGGCTGA

Upstream 100 bases:

>100_bases
ATTTCACCGAAAAGCTGTGGCCGGATTTTACCCCGGCGGACCTGAAAGCGGCGCTGGATCAATTTGCACGGCGCGATCGC
CGGTACGGGGGGCTTTGACG

Downstream 100 bases:

>100_bases
CATGACGCGCCGTCTCTCCCTCTTCGGCGCCACGGGATCGGTCGGGCAATCGACGCTCGACCTTGTCCGCCGCGACCGCG
AGGCGTGGCGCGTCGGGGTG

Product: phosphatidate cytidylyltransferase

Products: NA

Alternate protein names: CDP-DAG synthase; CDP-DG synthase; CDP-diacylglycerol synthase; CDS; CDP-diglyceride pyrophosphorylase; CDP-diglyceride synthase; CTP:phosphatidate cytidylyltransferase [H]

Number of amino acids: Translated: 221; Mature: 220

Protein sequence:

>221_residues
MAAKSDLWVRVGSAIILFAIAGTALWFGGIAFGLLLLVGGALVLVEWLALVRAMAIGGGSKAALTIIGPVLILGAAAGLW
FVRDQLGMTAALWVFGMVWATDIGAYFAGRSFGGARLAPTISPSKTWSGLFGGMVAALIASATIGDRAGIVGVPLWIGLF
MGLLAQMGDLAQSWMKRRAGVKDSGKLIPGHGGLFDRVDGLLPVALLLGALAFAGQIGARG

Sequences:

>Translated_221_residues
MAAKSDLWVRVGSAIILFAIAGTALWFGGIAFGLLLLVGGALVLVEWLALVRAMAIGGGSKAALTIIGPVLILGAAAGLW
FVRDQLGMTAALWVFGMVWATDIGAYFAGRSFGGARLAPTISPSKTWSGLFGGMVAALIASATIGDRAGIVGVPLWIGLF
MGLLAQMGDLAQSWMKRRAGVKDSGKLIPGHGGLFDRVDGLLPVALLLGALAFAGQIGARG
>Mature_220_residues
AAKSDLWVRVGSAIILFAIAGTALWFGGIAFGLLLLVGGALVLVEWLALVRAMAIGGGSKAALTIIGPVLILGAAAGLWF
VRDQLGMTAALWVFGMVWATDIGAYFAGRSFGGARLAPTISPSKTWSGLFGGMVAALIASATIGDRAGIVGVPLWIGLFM
GLLAQMGDLAQSWMKRRAGVKDSGKLIPGHGGLFDRVDGLLPVALLLGALAFAGQIGARG

Specific function: Phospholipid biosynthesis. [C]

COG id: COG0575

COG function: function code I; CDP-diglyceride synthetase

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CDS family [H]

Homologues:

Organism=Escherichia coli, GI87081696, Length=172, Percent_Identity=39.5348837209302, Blast_Score=97, Evalue=6e-22,
Organism=Escherichia coli, GI1787677, Length=105, Percent_Identity=44.7619047619048, Blast_Score=86, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000374 [H]

Pfam domain/function: PF01148 CTP_transf_1 [H]

EC number: =2.7.7.41 [H]

Molecular weight: Translated: 22575; Mature: 22444

Theoretical pI: Translated: 11.28; Mature: 11.28

Prosite motif: PS01315 CDS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAKSDLWVRVGSAIILFAIAGTALWFGGIAFGLLLLVGGALVLVEWLALVRAMAIGGGS
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
KAALTIIGPVLILGAAAGLWFVRDQLGMTAALWVFGMVWATDIGAYFAGRSFGGARLAPT
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
ISPSKTWSGLFGGMVAALIASATIGDRAGIVGVPLWIGLFMGLLAQMGDLAQSWMKRRAG
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
VKDSGKLIPGHGGLFDRVDGLLPVALLLGALAFAGQIGARG
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
AAKSDLWVRVGSAIILFAIAGTALWFGGIAFGLLLLVGGALVLVEWLALVRAMAIGGGS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
KAALTIIGPVLILGAAAGLWFVRDQLGMTAALWVFGMVWATDIGAYFAGRSFGGARLAPT
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
ISPSKTWSGLFGGMVAALIASATIGDRAGIVGVPLWIGLFMGLLAQMGDLAQSWMKRRAG
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
VKDSGKLIPGHGGLFDRVDGLLPVALLLGALAFAGQIGARG
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]