| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
Click here to switch to the map view.
The map label for this gene is 103487350
Identifier: 103487350
GI number: 103487350
Start: 1961285
End: 1962391
Strand: Reverse
Name: 103487350
Synonym: Sala_1866
Alternate gene names: NA
Gene position: 1962391-1961285 (Counterclockwise)
Preceding gene: 103487351
Following gene: 103487349
Centisome position: 58.66
GC content: 70.46
Gene sequence:
>1107_bases ATGACGGGTAACAGGGGAGGGTGCGATGAGCTGGGACAGCCTGTTCCTGCTGGCGAATTATTGGGCCATCGCGGCGTGGA TCGCGCTCGCCTTCCTGCCGCGCGGGCCAGGGACGCTCGCGCTGATCCTCTACCTCGGCGTGGCGCTGCTCTGCCTCGCT TACACCGTGCTGATCGCCGGATTCCTCACCGGCGGCATCGACCCCGGCGGGCCGGGCGGCGGCGACTTCACGACGCTCAA GGGCGTGATGATGCTGTTCGACAGCCCCGGCGGCGCGACGCTCGGCTGGATCCATTATCTCGCCTTCGACCTGTTCACCG GCATGTGGATCGCGCGCGACGCCGATCAGAAGGGGTTCAGCCGCATCGCCCAATTTCCCTTCCTGCTCCTGACCCTGCTC GTCGGGCCGGTCGGGCTGTTCGCGTGGCTGATCGTCCGCGAACGCCGCGCGCGGGCGCAGGCGAAGGCGAAGTGACGCCG CAGCCGTGGATGCCGGGTGACGAGGGCGCGGCGGACAAGCGCCACGCGCCCGCGACCTTGCGCAACCGCGACGCCATCGC CGCGGTGCTCGCCGACTGGCTGCCCGAGTTCGGCACGGTGCTGGAGGTTGCGAGCGGGTCGGGCGAACATGCCGTGCATT TCGCGGCGGCCTTTCCGCACCTCCTTTGGCAACCGAGCGACCCCGACCCCGCCGGGCTGACCTCGATCGCCGCCTGGCGC GCCGAGGCGGGGCTTGCCAATCTTGCACCGCCACTGGCACTCGATGCGGCGGCGCCCGACTGGCCGACCGGGCGCGCCGA CGCGATCCTGTGCATCAACATGGTGCATATCAGCCCGTGGGCTGCGACGCTGGGCCTGTTCGCGGGGGCGGCGCGATTGC TCGTGCCCGGTGCCCCGCTCATCCTCTATGGCCCCTTCATCGAACCCGATGTGCCGACCGCGGCGAGCAACCTCGACTTC GACGCCAATCTGCGCGCGCGCGATCCGGCGTGGGGGCTGCGCGACACCGATGCGGTCAAGGCCGCCGCCGACGACGCCGG GCTGGCCTTTGCCGAACGCCGCGCCATGCCCGCGAACAATCTGATGCTGCTGTTCCGCGGCACCTGA
Upstream 100 bases:
>100_bases TGGCGTGGGAAGGCGATCTATAATCCATCGTCATCCCGGCGAAGGCCGGGATCTCGCCGGTGCGTCATGATTACAGGATG AGATCCCGGCCTTCGCCGGG
Downstream 100 bases:
>100_bases CCGATCGGGCAGGGCAGGGGATCGGCGCTTTACCTCGGCGCGCCAATCGCTAGCTTTCTATGCAACCGCGCGAACGACGC GATTCGAGGAGAGAGAGGCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 368; Mature: 367
Protein sequence:
>368_residues MTGNRGGCDELGQPVPAGELLGHRGVDRARLPAARARDARADPLPRRGAALPRLHRADRRIPHRRHRPRRAGRRRLHDAQ GRDDAVRQPRRRDARLDPLSRLRPVHRHVDRARRRSEGVQPHRPISLPAPDPARRAGRAVRVADRPRTPRAGAGEGEVTP QPWMPGDEGAADKRHAPATLRNRDAIAAVLADWLPEFGTVLEVASGSGEHAVHFAAAFPHLLWQPSDPDPAGLTSIAAWR AEAGLANLAPPLALDAAAPDWPTGRADAILCINMVHISPWAATLGLFAGAARLLVPGAPLILYGPFIEPDVPTAASNLDF DANLRARDPAWGLRDTDAVKAAADDAGLAFAERRAMPANNLMLLFRGT
Sequences:
>Translated_368_residues MTGNRGGCDELGQPVPAGELLGHRGVDRARLPAARARDARADPLPRRGAALPRLHRADRRIPHRRHRPRRAGRRRLHDAQ GRDDAVRQPRRRDARLDPLSRLRPVHRHVDRARRRSEGVQPHRPISLPAPDPARRAGRAVRVADRPRTPRAGAGEGEVTP QPWMPGDEGAADKRHAPATLRNRDAIAAVLADWLPEFGTVLEVASGSGEHAVHFAAAFPHLLWQPSDPDPAGLTSIAAWR AEAGLANLAPPLALDAAAPDWPTGRADAILCINMVHISPWAATLGLFAGAARLLVPGAPLILYGPFIEPDVPTAASNLDF DANLRARDPAWGLRDTDAVKAAADDAGLAFAERRAMPANNLMLLFRGT >Mature_367_residues TGNRGGCDELGQPVPAGELLGHRGVDRARLPAARARDARADPLPRRGAALPRLHRADRRIPHRRHRPRRAGRRRLHDAQG RDDAVRQPRRRDARLDPLSRLRPVHRHVDRARRRSEGVQPHRPISLPAPDPARRAGRAVRVADRPRTPRAGAGEGEVTPQ PWMPGDEGAADKRHAPATLRNRDAIAAVLADWLPEFGTVLEVASGSGEHAVHFAAAFPHLLWQPSDPDPAGLTSIAAWRA EAGLANLAPPLALDAAAPDWPTGRADAILCINMVHISPWAATLGLFAGAARLLVPGAPLILYGPFIEPDVPTAASNLDFD ANLRARDPAWGLRDTDAVKAAADDAGLAFAERRAMPANNLMLLFRGT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI93102387, Length=199, Percent_Identity=47.2361809045226, Blast_Score=145, Evalue=7e-35, Organism=Homo sapiens, GI93102391, Length=138, Percent_Identity=49.2753623188406, Blast_Score=97, Evalue=2e-20, Organism=Homo sapiens, GI93102401, Length=133, Percent_Identity=45.8646616541353, Blast_Score=81, Evalue=2e-15, Organism=Caenorhabditis elegans, GI71998087, Length=199, Percent_Identity=36.1809045226131, Blast_Score=124, Evalue=1e-28, Organism=Drosophila melanogaster, GI28574095, Length=203, Percent_Identity=35.4679802955665, Blast_Score=125, Evalue=3e-29,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39801; Mature: 39669
Theoretical pI: Translated: 11.75; Mature: 11.75
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTGNRGGCDELGQPVPAGELLGHRGVDRARLPAARARDARADPLPRRGAALPRLHRADRR CCCCCCCHHHHCCCCCHHHHHHCCCCCHHHCCHHHHCCCCCCCCCCCCCCCHHHHHHHHC IPHRRHRPRRAGRRRLHDAQGRDDAVRQPRRRDARLDPLSRLRPVHRHVDRARRRSEGVQ CCHHHCCCHHHHHHHHHHCCCCCHHHHCCHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCC PHRPISLPAPDPARRAGRAVRVADRPRTPRAGAGEGEVTPQPWMPGDEGAADKRHAPATL CCCCCCCCCCCHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH RNRDAIAAVLADWLPEFGTVLEVASGSGEHAVHFAAAFPHLLWQPSDPDPAGLTSIAAWR HCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHCCCCCCCCHHHHHHHHHH AEAGLANLAPPLALDAAAPDWPTGRADAILCINMVHISPWAATLGLFAGAARLLVPGAPL HHCCHHHCCCCCEECCCCCCCCCCCCCEEEEEEEEECCHHHHHHHHHHHHHHHHCCCCCE ILYGPFIEPDVPTAASNLDFDANLRARDPAWGLRDTDAVKAAADDAGLAFAERRAMPANN EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHCCCCCC LMLLFRGT EEEEEECC >Mature Secondary Structure TGNRGGCDELGQPVPAGELLGHRGVDRARLPAARARDARADPLPRRGAALPRLHRADRR CCCCCCHHHHCCCCCHHHHHHCCCCCHHHCCHHHHCCCCCCCCCCCCCCCHHHHHHHHC IPHRRHRPRRAGRRRLHDAQGRDDAVRQPRRRDARLDPLSRLRPVHRHVDRARRRSEGVQ CCHHHCCCHHHHHHHHHHCCCCCHHHHCCHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCC PHRPISLPAPDPARRAGRAVRVADRPRTPRAGAGEGEVTPQPWMPGDEGAADKRHAPATL CCCCCCCCCCCHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH RNRDAIAAVLADWLPEFGTVLEVASGSGEHAVHFAAAFPHLLWQPSDPDPAGLTSIAAWR HCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHCCCCCCCCHHHHHHHHHH AEAGLANLAPPLALDAAAPDWPTGRADAILCINMVHISPWAATLGLFAGAARLLVPGAPL HHCCHHHCCCCCEECCCCCCCCCCCCCEEEEEEEEECCHHHHHHHHHHHHHHHHCCCCCE ILYGPFIEPDVPTAASNLDFDANLRARDPAWGLRDTDAVKAAADDAGLAFAERRAMPANN EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHCCCCCC LMLLFRGT EEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA