| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487331
Identifier: 103487331
GI number: 103487331
Start: 1942511
End: 1943266
Strand: Reverse
Name: 103487331
Synonym: Sala_1847
Alternate gene names: NA
Gene position: 1943266-1942511 (Counterclockwise)
Preceding gene: 103487336
Following gene: 103487326
Centisome position: 58.09
GC content: 62.83
Gene sequence:
>756_bases ATGAAGTTTCTTACCAAAGCGTGTTTCGGCATGCTGCTCGCCGCGTCGGCAATGTCGACGCCCGCCTTCGCTCAGGAAGA AGAAGCAGAAGCCAGCGGCCCCTTCACGCTTTCGGGCGGCATTGCGGTGACGAGCGACTATCGCTTCCGCGGCATTTCGC TGTCGAACGAAAAGGTCGCGGTGCAGCCGACGCTGACCGTTTCGCATGAAAGCGGCTTCTATGCCGGCGTCTGGGGCTCG TCGCTTCCCGACAGCCCGGCCTATGGCAAGTTCGAGCTCGACGTCTATGGCGGTTTCAACACCGAAATCGCGCCGGGCAC GACCGCCGACATCGGCGTGACCTGGTATACCTATCCCGGCAGCGACGATGGCGGCGCGCCGACCGACTATTTCGAGGGCA TCGGCAAGCTGTCGCACGACATCGGCCCCGTCTCGATCACCGGCATGGTCGCTTATGCGCCCAAGCAGGATTCACTCGGC GACCAGGACAATATCTATCTGAACCTCGGCGCCGGTTTTGGCATTCCGAACACCCCGGTCACGCTGACCGCGGGGATCGG CTATAATGACGGCTCGCTCGGCCTCGTGTCGCCCGACGGCCAATATGTCGACTGGTCGCTCGGCGCGTCCTTCGCCGCGG GGCCGCTGACTTTCTCGGCGCAATATATCGACACCGACGTCCCGAAGACGGGGGTGAAGGCGGTCGATACGCTGTACGAT CCGACCGTGGTGTTCACACTCGGCGCGTCCTTCTGA
Upstream 100 bases:
>100_bases CGGCAATTTCGAATCGTTCGCCGTCACAGACCCGCAAAAAGAGGTGTGGACGCGTCCGGCAGGCTGGGACGATCCGTTTG ACCATTTAGGGGGATCACCC
Downstream 100 bases:
>100_bases CGACCTAGCGGGTCCGCGGCCACGCGAAGGGGACGGCTTCGGGGGAGGCCGTCCCCTTTGTTGCGCGAAAGCTGGGAGCG ACGGCAGGATTCGTCCATCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 251; Mature: 251
Protein sequence:
>251_residues MKFLTKACFGMLLAASAMSTPAFAQEEEAEASGPFTLSGGIAVTSDYRFRGISLSNEKVAVQPTLTVSHESGFYAGVWGS SLPDSPAYGKFELDVYGGFNTEIAPGTTADIGVTWYTYPGSDDGGAPTDYFEGIGKLSHDIGPVSITGMVAYAPKQDSLG DQDNIYLNLGAGFGIPNTPVTLTAGIGYNDGSLGLVSPDGQYVDWSLGASFAAGPLTFSAQYIDTDVPKTGVKAVDTLYD PTVVFTLGASF
Sequences:
>Translated_251_residues MKFLTKACFGMLLAASAMSTPAFAQEEEAEASGPFTLSGGIAVTSDYRFRGISLSNEKVAVQPTLTVSHESGFYAGVWGS SLPDSPAYGKFELDVYGGFNTEIAPGTTADIGVTWYTYPGSDDGGAPTDYFEGIGKLSHDIGPVSITGMVAYAPKQDSLG DQDNIYLNLGAGFGIPNTPVTLTAGIGYNDGSLGLVSPDGQYVDWSLGASFAAGPLTFSAQYIDTDVPKTGVKAVDTLYD PTVVFTLGASF >Mature_251_residues MKFLTKACFGMLLAASAMSTPAFAQEEEAEASGPFTLSGGIAVTSDYRFRGISLSNEKVAVQPTLTVSHESGFYAGVWGS SLPDSPAYGKFELDVYGGFNTEIAPGTTADIGVTWYTYPGSDDGGAPTDYFEGIGKLSHDIGPVSITGMVAYAPKQDSLG DQDNIYLNLGAGFGIPNTPVTLTAGIGYNDGSLGLVSPDGQYVDWSLGASFAAGPLTFSAQYIDTDVPKTGVKAVDTLYD PTVVFTLGASF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26119; Mature: 26119
Theoretical pI: Translated: 3.89; Mature: 3.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKFLTKACFGMLLAASAMSTPAFAQEEEAEASGPFTLSGGIAVTSDYRFRGISLSNEKVA CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCEEEECCCEEEEEEECCCEEE VQPTLTVSHESGFYAGVWGSSLPDSPAYGKFELDVYGGFNTEIAPGTTADIGVTWYTYPG EEEEEEEECCCCEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEECCC SDDGGAPTDYFEGIGKLSHDIGPVSITGMVAYAPKQDSLGDQDNIYLNLGAGFGIPNTPV CCCCCCCHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCE TLTAGIGYNDGSLGLVSPDGQYVDWSLGASFAAGPLTFSAQYIDTDVPKTGVKAVDTLYD EEEEECCCCCCCEEEECCCCCEEEEECCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHCC PTVVFTLGASF CEEEEEECCCC >Mature Secondary Structure MKFLTKACFGMLLAASAMSTPAFAQEEEAEASGPFTLSGGIAVTSDYRFRGISLSNEKVA CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCEEEECCCEEEEEEECCCEEE VQPTLTVSHESGFYAGVWGSSLPDSPAYGKFELDVYGGFNTEIAPGTTADIGVTWYTYPG EEEEEEEECCCCEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEECCC SDDGGAPTDYFEGIGKLSHDIGPVSITGMVAYAPKQDSLGDQDNIYLNLGAGFGIPNTPV CCCCCCCHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCE TLTAGIGYNDGSLGLVSPDGQYVDWSLGASFAAGPLTFSAQYIDTDVPKTGVKAVDTLYD EEEEECCCCCCCEEEECCCCCEEEEECCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHCC PTVVFTLGASF CEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA