Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103487313

Identifier: 103487313

GI number: 103487313

Start: 1924391

End: 1925137

Strand: Reverse

Name: 103487313

Synonym: Sala_1829

Alternate gene names: NA

Gene position: 1925137-1924391 (Counterclockwise)

Preceding gene: 103487318

Following gene: 103487312

Centisome position: 57.55

GC content: 68.54

Gene sequence:

>747_bases
ATGCGAAACTGGACGATGGCGGCGCTGCCGCTGATGCTTGCGATGTCCGTGACGGCGTGTGGCGCCGGGGTGACGGGCGA
GAGCAAGGATGGCAAACGCACGGTCGAGGCGGGGCCGACGAAATCGCGGGGCTTCGATCTGACCGGCTTTACCGGCGTCA
AGGTCACGGGCCCCGATGATGTGACGATCCGCCGCGGCGACGCTTTCTCGATCGTCGCGCGCGGACCGCAGGCGGTGATC
GACGAGTTGGAAATCGAACTCGACGGCGACATGCTGTCGATCGGCCGGAAAGACTCGATGCTTCGGTTCGACGGGGATCA
GACGGTCGAGGTGACGGTCGTGATGCCCGCGCTCCGCGCGGTGCGCCTGACGGGTTCGGGCGCGATCGACGCCGATGCGA
TCGAGGGCGACGCGGTCGAGGCGGTGGTGACGGGCTCGGGCGACCTCAGGGTTGCGGCGATGAACGGCAAGCGCGCCAAG
CTGACGATCACCGGATCGGGCGATCTGGAGGTGGGCGGCGGCACGATCGGCGCGGGCAATTACGACGTGACGGGATCGGG
CAGCATCGCGGCGAGCGATCTGGCGGCCTCGACGCTCGACGTGTCGATCGCCGGATCGGGCGACGTCGACGCGCGCGCGA
GCGAGAGCGCCGACATTTCGATCCTGGGGTCGGGCGATGCGACGATCGGCGGTGGCGCCAAATGTTCGACGCGCGCGCTG
GGGTCGGGCGACGCGATCTGCAAATGA

Upstream 100 bases:

>100_bases
CGGCGCGCTCTGGCGCACGAAGGTGGCGACAAGATGGCGGCGCCTCTGGACAGGCGGACAGGATGTGTGTTATTAATATA
ATACACAAAGGAGATTCTCG

Downstream 100 bases:

>100_bases
CGCGAGGATGACGCGGCTATGGCGCCGCCCCGCCCGACGCGGTAGGATGGCGCCATGACCAGCCTGCCGCATTGGGCCGC
ATTGGCGGCAAGCACCCTGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 248; Mature: 248

Protein sequence:

>248_residues
MRNWTMAALPLMLAMSVTACGAGVTGESKDGKRTVEAGPTKSRGFDLTGFTGVKVTGPDDVTIRRGDAFSIVARGPQAVI
DELEIELDGDMLSIGRKDSMLRFDGDQTVEVTVVMPALRAVRLTGSGAIDADAIEGDAVEAVVTGSGDLRVAAMNGKRAK
LTITGSGDLEVGGGTIGAGNYDVTGSGSIAASDLAASTLDVSIAGSGDVDARASESADISILGSGDATIGGGAKCSTRAL
GSGDAICK

Sequences:

>Translated_248_residues
MRNWTMAALPLMLAMSVTACGAGVTGESKDGKRTVEAGPTKSRGFDLTGFTGVKVTGPDDVTIRRGDAFSIVARGPQAVI
DELEIELDGDMLSIGRKDSMLRFDGDQTVEVTVVMPALRAVRLTGSGAIDADAIEGDAVEAVVTGSGDLRVAAMNGKRAK
LTITGSGDLEVGGGTIGAGNYDVTGSGSIAASDLAASTLDVSIAGSGDVDARASESADISILGSGDATIGGGAKCSTRAL
GSGDAICK
>Mature_248_residues
MRNWTMAALPLMLAMSVTACGAGVTGESKDGKRTVEAGPTKSRGFDLTGFTGVKVTGPDDVTIRRGDAFSIVARGPQAVI
DELEIELDGDMLSIGRKDSMLRFDGDQTVEVTVVMPALRAVRLTGSGAIDADAIEGDAVEAVVTGSGDLRVAAMNGKRAK
LTITGSGDLEVGGGTIGAGNYDVTGSGSIAASDLAASTLDVSIAGSGDVDARASESADISILGSGDATIGGGAKCSTRAL
GSGDAICK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24789; Mature: 24789

Theoretical pI: Translated: 4.29; Mature: 4.29

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNWTMAALPLMLAMSVTACGAGVTGESKDGKRTVEAGPTKSRGFDLTGFTGVKVTGPDD
CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCEEECCCCEEEEECCCC
VTIRRGDAFSIVARGPQAVIDELEIELDGDMLSIGRKDSMLRFDGDQTVEVTVVMPALRA
EEEECCCEEEEEECCHHHHHEEEEEEECCCEEECCCCCCEEEECCCCEEEEEEEECCCEE
VRLTGSGAIDADAIEGDAVEAVVTGSGDLRVAAMNGKRAKLTITGSGDLEVGGGTIGAGN
EEEECCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEEECCCCEEECCEEECCCC
YDVTGSGSIAASDLAASTLDVSIAGSGDVDARASESADISILGSGDATIGGGAKCSTRAL
EEECCCCCEEECCCCCEEEEEEEECCCCCCCCCCCCCCEEEEECCCCEECCCCCCCEEEC
GSGDAICK
CCCCCCCC
>Mature Secondary Structure
MRNWTMAALPLMLAMSVTACGAGVTGESKDGKRTVEAGPTKSRGFDLTGFTGVKVTGPDD
CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCEEECCCCEEEEECCCC
VTIRRGDAFSIVARGPQAVIDELEIELDGDMLSIGRKDSMLRFDGDQTVEVTVVMPALRA
EEEECCCEEEEEECCHHHHHEEEEEEECCCEEECCCCCCEEEECCCCEEEEEEEECCCEE
VRLTGSGAIDADAIEGDAVEAVVTGSGDLRVAAMNGKRAKLTITGSGDLEVGGGTIGAGN
EEEECCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEEECCCCEEECCEEECCCC
YDVTGSGSIAASDLAASTLDVSIAGSGDVDARASESADISILGSGDATIGGGAKCSTRAL
EEECCCCCEEECCCCCEEEEEEEECCCCCCCCCCCCCCEEEEECCCCEECCCCCCCEEEC
GSGDAICK
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA