| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
Click here to switch to the map view.
The map label for this gene is 103487308
Identifier: 103487308
GI number: 103487308
Start: 1921647
End: 1921898
Strand: Reverse
Name: 103487308
Synonym: Sala_1824
Alternate gene names: NA
Gene position: 1921898-1921647 (Counterclockwise)
Preceding gene: 103487310
Following gene: 103487307
Centisome position: 57.45
GC content: 65.48
Gene sequence:
>252_bases TTGACCCACCGTGATTGCCCCCTGAAGTTCGTCGGCAAGAAGCGTCTCGCAGGACGGGCTGGTTGCCCGGACCAGAGACG CGCCGCTGTCCGGCGGGCTTCAGGGGGCAACCCTTCCGGGGCGGGTCGATTCTGGCCGATTGCCACGTTGCTCGTCGGGC GCGATATCTCGCATCGCGCCGCTCCTCGCGCCTCGCACTCGGCCAAAATCGTCTCCGTCACGGTGGGTCAATATCATGTC ATCGCGCTCTAG
Upstream 100 bases:
>100_bases GAGTTTCTGCACCATGGTTTTTCTCCCGCTGGTCAATGCCGTGCGGTCGCCATAAGAAAGGGCGCGATGAGCGACAAGTC TAGAGCGCGATGACATGATA
Downstream 100 bases:
>100_bases CCTGTCAGCCGGATGGACCGGCGCCGCCCCCGACGCCGATGCGCTGTTCGCGATGGCCGAAGCGGCGCTGGAAACCATGC CCGACGTGTTCAGACCGCAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 83; Mature: 82
Protein sequence:
>83_residues MTHRDCPLKFVGKKRLAGRAGCPDQRRAAVRRASGGNPSGAGRFWPIATLLVGRDISHRAAPRASHSAKIVSVTVGQYHV IAL
Sequences:
>Translated_83_residues MTHRDCPLKFVGKKRLAGRAGCPDQRRAAVRRASGGNPSGAGRFWPIATLLVGRDISHRAAPRASHSAKIVSVTVGQYHV IAL >Mature_82_residues THRDCPLKFVGKKRLAGRAGCPDQRRAAVRRASGGNPSGAGRFWPIATLLVGRDISHRAAPRASHSAKIVSVTVGQYHVI AL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 8884; Mature: 8753
Theoretical pI: Translated: 12.28; Mature: 12.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTHRDCPLKFVGKKRLAGRAGCPDQRRAAVRRASGGNPSGAGRFWPIATLLVGRDISHRA CCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCC APRASHSAKIVSVTVGQYHVIAL CCCCCCCCEEEEEECCCEEEEEC >Mature Secondary Structure THRDCPLKFVGKKRLAGRAGCPDQRRAAVRRASGGNPSGAGRFWPIATLLVGRDISHRA CCCCCCEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCC APRASHSAKIVSVTVGQYHVIAL CCCCCCCCEEEEEECCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA