| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487298
Identifier: 103487298
GI number: 103487298
Start: 1911610
End: 1912551
Strand: Reverse
Name: 103487298
Synonym: Sala_1814
Alternate gene names: NA
Gene position: 1912551-1911610 (Counterclockwise)
Preceding gene: 103487299
Following gene: 103487297
Centisome position: 57.17
GC content: 63.59
Gene sequence:
>942_bases ATGCTAGGGAAAACCGCCGGTGCCCTTTACTGGATGGCGCGCTATCTGGAGCGCAGCGAAAACAATGCGCGGCTGATCGA CGCGGGGTTCCGCATCGCCTTGACGCGGTCGAACACCGCGGCGGCCGAATGGCGGTCGGTGCTCGTCACCGCGGGACAGG ACTATGCCTTTCGGCAGGCGCATGAGGATTATCATTCGCAGCGCGTCGTCGATTTCATGCTGCGTGACCCCGCCAATCCG TCGAGCATATTGTCGGTGATCAAGCGCGCGCGCGACAATGCCCGCACCGCACGCACCTATCTGACGCGCGAGGCGTGGGA GGCGATCAACACGAGCTGGATGACGCTGGGCACGCTTTTGAAGCGGCCGGTGCGCGAGGACGATCTGCCCGACGTGCTCG CGGCGATCCGCCAGCAGAGCGGGCTGGTGCGCGGCGCCTTCGCGGGCACGATGCTGCGCAACGACGGCTATAATTTCTCG CGCCTCGGCACCTTCCTCGAACGCGCCGACAACACCGCGCGCATCCTCGACGTCAAATATTATCTCCTGCTGCCCTCGGT TGCGCATATCGGCACCTCGATCGACAATGTGCAGTGGGAGACGATCCTGCGTTCGGTGTCGGCGCATCGCGCCTATCACT GGCTCTATGGCACCGAAATCAGCGCGCTGAAGATCGCGGAGTTCCTGATCCTCTACAGACAGATGCCGCGCAGCCTGGCC TTTTGCTGCGACAAGATGAACGACAATCTCGGCTGGCTCGCGCGCGCTTATGGCGAAGAGACCGAGGCGGTGCGGATGGG GGCGTCGATCTGCAACGACCGGCTGTCGCGGCCGATCGCGGCGATCTTTGACGGCGGGCTGCACGAGTTCATCACCGATT TCCTTCGCGCCAATGCCGCTCTCGCGCGGCAGATCGAGCGCGATTACCGTTTCGTGGAGTGA
Upstream 100 bases:
>100_bases GTCGCCCCCGCGAAGGCGGGGGCCGCCGACAGCCTGACCCTTCGTTGCGGCGTAAGCCGCCAGCGGCCCCCACCTTCGCG GCGGCGACGGGAATCTGCCC
Downstream 100 bases:
>100_bases CCATGCGGCTGCGCGTCGAACATATCACCCATTATCAATATGACAGCCCGGTGCGCTACGCGCTCCAGCAGTTGAAACTG ACGCCCAAGGAGCGGCCGGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 313; Mature: 313
Protein sequence:
>313_residues MLGKTAGALYWMARYLERSENNARLIDAGFRIALTRSNTAAAEWRSVLVTAGQDYAFRQAHEDYHSQRVVDFMLRDPANP SSILSVIKRARDNARTARTYLTREAWEAINTSWMTLGTLLKRPVREDDLPDVLAAIRQQSGLVRGAFAGTMLRNDGYNFS RLGTFLERADNTARILDVKYYLLLPSVAHIGTSIDNVQWETILRSVSAHRAYHWLYGTEISALKIAEFLILYRQMPRSLA FCCDKMNDNLGWLARAYGEETEAVRMGASICNDRLSRPIAAIFDGGLHEFITDFLRANAALARQIERDYRFVE
Sequences:
>Translated_313_residues MLGKTAGALYWMARYLERSENNARLIDAGFRIALTRSNTAAAEWRSVLVTAGQDYAFRQAHEDYHSQRVVDFMLRDPANP SSILSVIKRARDNARTARTYLTREAWEAINTSWMTLGTLLKRPVREDDLPDVLAAIRQQSGLVRGAFAGTMLRNDGYNFS RLGTFLERADNTARILDVKYYLLLPSVAHIGTSIDNVQWETILRSVSAHRAYHWLYGTEISALKIAEFLILYRQMPRSLA FCCDKMNDNLGWLARAYGEETEAVRMGASICNDRLSRPIAAIFDGGLHEFITDFLRANAALARQIERDYRFVE >Mature_313_residues MLGKTAGALYWMARYLERSENNARLIDAGFRIALTRSNTAAAEWRSVLVTAGQDYAFRQAHEDYHSQRVVDFMLRDPANP SSILSVIKRARDNARTARTYLTREAWEAINTSWMTLGTLLKRPVREDDLPDVLAAIRQQSGLVRGAFAGTMLRNDGYNFS RLGTFLERADNTARILDVKYYLLLPSVAHIGTSIDNVQWETILRSVSAHRAYHWLYGTEISALKIAEFLILYRQMPRSLA FCCDKMNDNLGWLARAYGEETEAVRMGASICNDRLSRPIAAIFDGGLHEFITDFLRANAALARQIERDYRFVE
Specific function: Unknown
COG id: COG2307
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35627; Mature: 35627
Theoretical pI: Translated: 8.99; Mature: 8.99
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLGKTAGALYWMARYLERSENNARLIDAGFRIALTRSNTAAAEWRSVLVTAGQDYAFRQA CCCCHHHHHHHHHHHHHHCCCCCEEEECCEEEEEECCCCHHHHHHHHHHCCCCCHHHHHH HEDYHSQRVVDFMLRDPANPSSILSVIKRARDNARTARTYLTREAWEAINTSWMTLGTLL HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH KRPVREDDLPDVLAAIRQQSGLVRGAFAGTMLRNDGYNFSRLGTFLERADNTARILDVKY HCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEEEHHH YLLLPSVAHIGTSIDNVQWETILRSVSAHRAYHWLYGTEISALKIAEFLILYRQMPRSLA HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH FCCDKMNDNLGWLARAYGEETEAVRMGASICNDRLSRPIAAIFDGGLHEFITDFLRANAA HHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHH LARQIERDYRFVE HHHHHHHHCCCCC >Mature Secondary Structure MLGKTAGALYWMARYLERSENNARLIDAGFRIALTRSNTAAAEWRSVLVTAGQDYAFRQA CCCCHHHHHHHHHHHHHHCCCCCEEEECCEEEEEECCCCHHHHHHHHHHCCCCCHHHHHH HEDYHSQRVVDFMLRDPANPSSILSVIKRARDNARTARTYLTREAWEAINTSWMTLGTLL HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH KRPVREDDLPDVLAAIRQQSGLVRGAFAGTMLRNDGYNFSRLGTFLERADNTARILDVKY HCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEEEHHH YLLLPSVAHIGTSIDNVQWETILRSVSAHRAYHWLYGTEISALKIAEFLILYRQMPRSLA HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH FCCDKMNDNLGWLARAYGEETEAVRMGASICNDRLSRPIAAIFDGGLHEFITDFLRANAA HHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHH LARQIERDYRFVE HHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA