Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

Click here to switch to the map view.

The map label for this gene is 103487298

Identifier: 103487298

GI number: 103487298

Start: 1911610

End: 1912551

Strand: Reverse

Name: 103487298

Synonym: Sala_1814

Alternate gene names: NA

Gene position: 1912551-1911610 (Counterclockwise)

Preceding gene: 103487299

Following gene: 103487297

Centisome position: 57.17

GC content: 63.59

Gene sequence:

>942_bases
ATGCTAGGGAAAACCGCCGGTGCCCTTTACTGGATGGCGCGCTATCTGGAGCGCAGCGAAAACAATGCGCGGCTGATCGA
CGCGGGGTTCCGCATCGCCTTGACGCGGTCGAACACCGCGGCGGCCGAATGGCGGTCGGTGCTCGTCACCGCGGGACAGG
ACTATGCCTTTCGGCAGGCGCATGAGGATTATCATTCGCAGCGCGTCGTCGATTTCATGCTGCGTGACCCCGCCAATCCG
TCGAGCATATTGTCGGTGATCAAGCGCGCGCGCGACAATGCCCGCACCGCACGCACCTATCTGACGCGCGAGGCGTGGGA
GGCGATCAACACGAGCTGGATGACGCTGGGCACGCTTTTGAAGCGGCCGGTGCGCGAGGACGATCTGCCCGACGTGCTCG
CGGCGATCCGCCAGCAGAGCGGGCTGGTGCGCGGCGCCTTCGCGGGCACGATGCTGCGCAACGACGGCTATAATTTCTCG
CGCCTCGGCACCTTCCTCGAACGCGCCGACAACACCGCGCGCATCCTCGACGTCAAATATTATCTCCTGCTGCCCTCGGT
TGCGCATATCGGCACCTCGATCGACAATGTGCAGTGGGAGACGATCCTGCGTTCGGTGTCGGCGCATCGCGCCTATCACT
GGCTCTATGGCACCGAAATCAGCGCGCTGAAGATCGCGGAGTTCCTGATCCTCTACAGACAGATGCCGCGCAGCCTGGCC
TTTTGCTGCGACAAGATGAACGACAATCTCGGCTGGCTCGCGCGCGCTTATGGCGAAGAGACCGAGGCGGTGCGGATGGG
GGCGTCGATCTGCAACGACCGGCTGTCGCGGCCGATCGCGGCGATCTTTGACGGCGGGCTGCACGAGTTCATCACCGATT
TCCTTCGCGCCAATGCCGCTCTCGCGCGGCAGATCGAGCGCGATTACCGTTTCGTGGAGTGA

Upstream 100 bases:

>100_bases
GTCGCCCCCGCGAAGGCGGGGGCCGCCGACAGCCTGACCCTTCGTTGCGGCGTAAGCCGCCAGCGGCCCCCACCTTCGCG
GCGGCGACGGGAATCTGCCC

Downstream 100 bases:

>100_bases
CCATGCGGCTGCGCGTCGAACATATCACCCATTATCAATATGACAGCCCGGTGCGCTACGCGCTCCAGCAGTTGAAACTG
ACGCCCAAGGAGCGGCCGGG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MLGKTAGALYWMARYLERSENNARLIDAGFRIALTRSNTAAAEWRSVLVTAGQDYAFRQAHEDYHSQRVVDFMLRDPANP
SSILSVIKRARDNARTARTYLTREAWEAINTSWMTLGTLLKRPVREDDLPDVLAAIRQQSGLVRGAFAGTMLRNDGYNFS
RLGTFLERADNTARILDVKYYLLLPSVAHIGTSIDNVQWETILRSVSAHRAYHWLYGTEISALKIAEFLILYRQMPRSLA
FCCDKMNDNLGWLARAYGEETEAVRMGASICNDRLSRPIAAIFDGGLHEFITDFLRANAALARQIERDYRFVE

Sequences:

>Translated_313_residues
MLGKTAGALYWMARYLERSENNARLIDAGFRIALTRSNTAAAEWRSVLVTAGQDYAFRQAHEDYHSQRVVDFMLRDPANP
SSILSVIKRARDNARTARTYLTREAWEAINTSWMTLGTLLKRPVREDDLPDVLAAIRQQSGLVRGAFAGTMLRNDGYNFS
RLGTFLERADNTARILDVKYYLLLPSVAHIGTSIDNVQWETILRSVSAHRAYHWLYGTEISALKIAEFLILYRQMPRSLA
FCCDKMNDNLGWLARAYGEETEAVRMGASICNDRLSRPIAAIFDGGLHEFITDFLRANAALARQIERDYRFVE
>Mature_313_residues
MLGKTAGALYWMARYLERSENNARLIDAGFRIALTRSNTAAAEWRSVLVTAGQDYAFRQAHEDYHSQRVVDFMLRDPANP
SSILSVIKRARDNARTARTYLTREAWEAINTSWMTLGTLLKRPVREDDLPDVLAAIRQQSGLVRGAFAGTMLRNDGYNFS
RLGTFLERADNTARILDVKYYLLLPSVAHIGTSIDNVQWETILRSVSAHRAYHWLYGTEISALKIAEFLILYRQMPRSLA
FCCDKMNDNLGWLARAYGEETEAVRMGASICNDRLSRPIAAIFDGGLHEFITDFLRANAALARQIERDYRFVE

Specific function: Unknown

COG id: COG2307

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 35627; Mature: 35627

Theoretical pI: Translated: 8.99; Mature: 8.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLGKTAGALYWMARYLERSENNARLIDAGFRIALTRSNTAAAEWRSVLVTAGQDYAFRQA
CCCCHHHHHHHHHHHHHHCCCCCEEEECCEEEEEECCCCHHHHHHHHHHCCCCCHHHHHH
HEDYHSQRVVDFMLRDPANPSSILSVIKRARDNARTARTYLTREAWEAINTSWMTLGTLL
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
KRPVREDDLPDVLAAIRQQSGLVRGAFAGTMLRNDGYNFSRLGTFLERADNTARILDVKY
HCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEEEHHH
YLLLPSVAHIGTSIDNVQWETILRSVSAHRAYHWLYGTEISALKIAEFLILYRQMPRSLA
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
FCCDKMNDNLGWLARAYGEETEAVRMGASICNDRLSRPIAAIFDGGLHEFITDFLRANAA
HHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHH
LARQIERDYRFVE
HHHHHHHHCCCCC
>Mature Secondary Structure
MLGKTAGALYWMARYLERSENNARLIDAGFRIALTRSNTAAAEWRSVLVTAGQDYAFRQA
CCCCHHHHHHHHHHHHHHCCCCCEEEECCEEEEEECCCCHHHHHHHHHHCCCCCHHHHHH
HEDYHSQRVVDFMLRDPANPSSILSVIKRARDNARTARTYLTREAWEAINTSWMTLGTLL
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
KRPVREDDLPDVLAAIRQQSGLVRGAFAGTMLRNDGYNFSRLGTFLERADNTARILDVKY
HCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEEEHHH
YLLLPSVAHIGTSIDNVQWETILRSVSAHRAYHWLYGTEISALKIAEFLILYRQMPRSLA
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
FCCDKMNDNLGWLARAYGEETEAVRMGASICNDRLSRPIAAIFDGGLHEFITDFLRANAA
HHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHH
LARQIERDYRFVE
HHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA