Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is zraS [C]

Identifier: 103487212

GI number: 103487212

Start: 1816029

End: 1818410

Strand: Reverse

Name: zraS [C]

Synonym: Sala_1727

Alternate gene names: 103487212

Gene position: 1818410-1816029 (Counterclockwise)

Preceding gene: 103487213

Following gene: 103487211

Centisome position: 54.36

GC content: 66.67

Gene sequence:

>2382_bases
ATGCCGCCTGCGGCACTGTCGCGGCTCGATGTCGCCTTGCTCGCGGCGCTCGCGCTCGTCTCGGCCGTGCTGCTGTTCTG
GGCCACGGGCAGCAAGATCCTTGCCGCGGGCTTTGTTGCGGGACTTGCGGTGGCCGCCGGCGGCGTGCTGCTGGTGCGGC
GCCTGTTTCCCACCGCGGCGGGAGGCGAAGCCGCGACACCTGACTGGACCATGCTGCGCCAGGCCGTCAATCACGACGAT
GTCGCGATTGCCGTCACCGACCGCACGGGCCGCATGGTTTGCGCCAACGACCTGTTCGCCACCTGGATGGGCGGTTTTGT
CACACCCCCCGGCCTGCCGGTCGACGGACGCGGCGCCGAACTGCTCAAAAACGCCGGGCGGACGGCGTGGCGCGATGGCG
AGGGACGCGCCGATGACCTTGCGATCGGCCCGCTGCGATTGCGCGCGCAGGTGATGCGCACGGGGCAGGCGGAGGATTAT
CTGGTCTGGCGCTTTGCCGCGATCGAACGGTTCGATCTGGTCGCCGAACTCACGCGGCATCTGGGCGGTCCGGCGGGCCG
GACGCTGGGCCATGCCGGGGTCATGGCGGCGCTGGTCAACAGCGAAGGCCGCCTTCGCGCTGCCAATGAGGCGTTTCTGC
TGCGCGCACTCGGCGAGGAGGATGCCCGCCATTACGCCGGGCGCGATGTTGCGGCGATGTTGCGTATCGACGATGGCGGC
GCCCTTTATTTTGCGCGCGAGGGCGACCGCGCGACGCCGGTGCGGCTGATCCAGATCCCGCTCGTTTCGTCCGACAGCAA
TTCGCCAGTGCTGCTCGCGATGCTCGACGAGGAGATGGGGCCGGCCGACCGCGGCACCGCGCAAACCTATGTCGAAACCT
TGCTTTCGCTGCTGCCCTTCGGGCTGGCGCTCGTCGACCGCGACGGACGCTTCCTTTACATGAATCGCGCTTTCAAGCGT
GCTGCCAACCTTCCTGAAGCCAAGATGCCGCGTTATCCGGGCGACATCGTCGTCGGCGAGGACAAGGGGCCGCTGGCCGA
CATGATCCGTCGTCACAGCAGCGGGCAACAGGTCGGCGGCGACCTGTCGATCCGCTTGGCTGGGCAGAGCGGCGATCCGG
TGTCGATGCGCGTTGTCGGGGTGCGGGGCCTCGGCGAAGCGGCGGTGCTTTTGAGTCTCAAGGATTCGAGCGAGGAATCG
CGCCTCAAGCGCCAGGTCGCGCAGGCGTCGAAGATGCAGGCGGTGGGCCAGCTTGCGGGCGGTGTCGCGCATGATTTCAA
CAATATCCTGACCGCGGTGCTCGGTGCGTGCGACCTGATGCTGATGCGGCATACGCCGGGCGACAGCGACTATGACGACA
TCCAGCAGATTCGCAGCAACGCCAATCGCGCCGCCAGCCTGACGCGGCAATTGCTTGCCTTTTCGCGGCAACAGACGCTG
CGACCGCAGATATTGCAACTGCCCGACGTGATTTCGGAGGTGTCGCATTTGTTGAAACGCCTGATCGGCGAGACGGTGCA
GCTTTCGGTGCATCACGGTCGCGGCCTCGGGGCGGTGCGCGCCGACCCCGGCCAGCTCGAACAGGTGATCATCAACCTGG
CCGTCAACGCGCGCGACGCGATGCCCGGCGGCGGGACGCTGACGATCGAAACCTATCCGGTGTCGGCCACCGATGTGCGC
CAGATGGGCAATGAGTTCATGCCACCCGCCGATTATTGCGCGCTGAAGGTCAGCGATACGGGCACCGGCATTCCCGCCGA
CATATTGCCCAAGATTTTCGAACCCTTTTTCACGACCAAGGATGTGGGCAAAGGGACGGGGCTCGGCCTGTCGACCGTTT
ATGGCATCATCAAGCAGTCGGCGGGCTTCATCTTTGCCGACAGCAAGCCGGGAGAGGGCACCAGCTTTACCATCTATCTG
CCCGTCCACCGCGTCGCGGGTGACGCCCCGGCGGCGCCGCAGCCGCCCGCCAAGCCCAAAAAGAGCCAGTGGGGCAGCGG
GACGATCCTGCTCGTCGAAGACGAGGACATGGTGCGTGCGGTCGCGGAACGCGCCCTGGCCCGCGCGGGTTATACGGTCG
TCACCGCCGCGCAGGGCGAGGAAGGACTCGAACGTTTTGCCGGGATGGAGAAGGTCGATTTGGTCATCAGCGATGTCGTG
ATGCCGACGATGGACGGGTCGGCGATGGTGCGCGCGATGCGCGCCAGGCGCCCCGGCCTGCCGGTGCTGTTCATGTCGGG
CTATGCCGAGGAACAGCTGCGCCAGTCGATCGACATCGACAATGTGTCTTTCCTGCCCAAACCCTTCTCGGTCGCGCAGC
TGGCCGAGGCGACCTCGGCGGCGCTGGACGAGGCCGCGCATCGCGGGGGCCGGGATGGCTGA

Upstream 100 bases:

>100_bases
TCTGGTGACAAGCCGATAGAAAGAGTGTGATTTGACCGCGCAAAGCCTGTCCTCCGCTGATGGTAACGTCATCGGGGAGA
CGGGCCCTGCGGACACGATC

Downstream 100 bases:

>100_bases
GCGGCGCATCCTGATCGTCGAGGATGATGTGCTGATCGGCATGATGCTGGTCGACATGTTCGACGCGCTCGGCCTGCCCG
AACCCGCGCAGGCGACGAGC

Product: periplasmic sensor hybrid histidine kinase

Products: NA

Alternate protein names: Blue-light-activated histidine kinase; Response regulator [H]

Number of amino acids: Translated: 793; Mature: 792

Protein sequence:

>793_residues
MPPAALSRLDVALLAALALVSAVLLFWATGSKILAAGFVAGLAVAAGGVLLVRRLFPTAAGGEAATPDWTMLRQAVNHDD
VAIAVTDRTGRMVCANDLFATWMGGFVTPPGLPVDGRGAELLKNAGRTAWRDGEGRADDLAIGPLRLRAQVMRTGQAEDY
LVWRFAAIERFDLVAELTRHLGGPAGRTLGHAGVMAALVNSEGRLRAANEAFLLRALGEEDARHYAGRDVAAMLRIDDGG
ALYFAREGDRATPVRLIQIPLVSSDSNSPVLLAMLDEEMGPADRGTAQTYVETLLSLLPFGLALVDRDGRFLYMNRAFKR
AANLPEAKMPRYPGDIVVGEDKGPLADMIRRHSSGQQVGGDLSIRLAGQSGDPVSMRVVGVRGLGEAAVLLSLKDSSEES
RLKRQVAQASKMQAVGQLAGGVAHDFNNILTAVLGACDLMLMRHTPGDSDYDDIQQIRSNANRAASLTRQLLAFSRQQTL
RPQILQLPDVISEVSHLLKRLIGETVQLSVHHGRGLGAVRADPGQLEQVIINLAVNARDAMPGGGTLTIETYPVSATDVR
QMGNEFMPPADYCALKVSDTGTGIPADILPKIFEPFFTTKDVGKGTGLGLSTVYGIIKQSAGFIFADSKPGEGTSFTIYL
PVHRVAGDAPAAPQPPAKPKKSQWGSGTILLVEDEDMVRAVAERALARAGYTVVTAAQGEEGLERFAGMEKVDLVISDVV
MPTMDGSAMVRAMRARRPGLPVLFMSGYAEEQLRQSIDIDNVSFLPKPFSVAQLAEATSAALDEAAHRGGRDG

Sequences:

>Translated_793_residues
MPPAALSRLDVALLAALALVSAVLLFWATGSKILAAGFVAGLAVAAGGVLLVRRLFPTAAGGEAATPDWTMLRQAVNHDD
VAIAVTDRTGRMVCANDLFATWMGGFVTPPGLPVDGRGAELLKNAGRTAWRDGEGRADDLAIGPLRLRAQVMRTGQAEDY
LVWRFAAIERFDLVAELTRHLGGPAGRTLGHAGVMAALVNSEGRLRAANEAFLLRALGEEDARHYAGRDVAAMLRIDDGG
ALYFAREGDRATPVRLIQIPLVSSDSNSPVLLAMLDEEMGPADRGTAQTYVETLLSLLPFGLALVDRDGRFLYMNRAFKR
AANLPEAKMPRYPGDIVVGEDKGPLADMIRRHSSGQQVGGDLSIRLAGQSGDPVSMRVVGVRGLGEAAVLLSLKDSSEES
RLKRQVAQASKMQAVGQLAGGVAHDFNNILTAVLGACDLMLMRHTPGDSDYDDIQQIRSNANRAASLTRQLLAFSRQQTL
RPQILQLPDVISEVSHLLKRLIGETVQLSVHHGRGLGAVRADPGQLEQVIINLAVNARDAMPGGGTLTIETYPVSATDVR
QMGNEFMPPADYCALKVSDTGTGIPADILPKIFEPFFTTKDVGKGTGLGLSTVYGIIKQSAGFIFADSKPGEGTSFTIYL
PVHRVAGDAPAAPQPPAKPKKSQWGSGTILLVEDEDMVRAVAERALARAGYTVVTAAQGEEGLERFAGMEKVDLVISDVV
MPTMDGSAMVRAMRARRPGLPVLFMSGYAEEQLRQSIDIDNVSFLPKPFSVAQLAEATSAALDEAAHRGGRDG
>Mature_792_residues
PPAALSRLDVALLAALALVSAVLLFWATGSKILAAGFVAGLAVAAGGVLLVRRLFPTAAGGEAATPDWTMLRQAVNHDDV
AIAVTDRTGRMVCANDLFATWMGGFVTPPGLPVDGRGAELLKNAGRTAWRDGEGRADDLAIGPLRLRAQVMRTGQAEDYL
VWRFAAIERFDLVAELTRHLGGPAGRTLGHAGVMAALVNSEGRLRAANEAFLLRALGEEDARHYAGRDVAAMLRIDDGGA
LYFAREGDRATPVRLIQIPLVSSDSNSPVLLAMLDEEMGPADRGTAQTYVETLLSLLPFGLALVDRDGRFLYMNRAFKRA
ANLPEAKMPRYPGDIVVGEDKGPLADMIRRHSSGQQVGGDLSIRLAGQSGDPVSMRVVGVRGLGEAAVLLSLKDSSEESR
LKRQVAQASKMQAVGQLAGGVAHDFNNILTAVLGACDLMLMRHTPGDSDYDDIQQIRSNANRAASLTRQLLAFSRQQTLR
PQILQLPDVISEVSHLLKRLIGETVQLSVHHGRGLGAVRADPGQLEQVIINLAVNARDAMPGGGTLTIETYPVSATDVRQ
MGNEFMPPADYCALKVSDTGTGIPADILPKIFEPFFTTKDVGKGTGLGLSTVYGIIKQSAGFIFADSKPGEGTSFTIYLP
VHRVAGDAPAAPQPPAKPKKSQWGSGTILLVEDEDMVRAVAERALARAGYTVVTAAQGEEGLERFAGMEKVDLVISDVVM
PTMDGSAMVRAMRARRPGLPVLFMSGYAEEQLRQSIDIDNVSFLPKPFSVAQLAEATSAALDEAAHRGGRDG

Specific function: Photosensitive kinase and response regulator that is involved in increased bacterial virulence upon exposure to light [H]

COG id: COG0642

COG function: function code T; Signal transduction histidine kinase

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1790436, Length=248, Percent_Identity=31.4516129032258, Blast_Score=113, Evalue=5e-26,
Organism=Escherichia coli, GI1788549, Length=256, Percent_Identity=30.46875, Blast_Score=106, Evalue=5e-24,
Organism=Escherichia coli, GI145693157, Length=435, Percent_Identity=25.0574712643678, Blast_Score=94, Evalue=3e-20,
Organism=Escherichia coli, GI1788713, Length=289, Percent_Identity=28.0276816608997, Blast_Score=90, Evalue=5e-19,
Organism=Escherichia coli, GI87081816, Length=254, Percent_Identity=28.3464566929134, Blast_Score=83, Evalue=6e-17,
Organism=Escherichia coli, GI1790300, Length=267, Percent_Identity=28.4644194756554, Blast_Score=83, Evalue=7e-17,
Organism=Escherichia coli, GI48994928, Length=215, Percent_Identity=33.0232558139535, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI1790299, Length=106, Percent_Identity=36.7924528301887, Blast_Score=72, Evalue=2e-13,
Organism=Escherichia coli, GI1788905, Length=123, Percent_Identity=36.5853658536585, Blast_Score=64, Evalue=3e-11,
Organism=Escherichia coli, GI1790346, Length=242, Percent_Identity=26.0330578512397, Blast_Score=64, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR011006
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013767
- InterPro:   IPR004358
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082
- InterPro:   IPR001789 [H]

Pfam domain/function: PF02518 HATPase_c; PF00512 HisKA; PF00989 PAS; PF00072 Response_reg [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 84455; Mature: 84324

Theoretical pI: Translated: 6.27; Mature: 6.27

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPPAALSRLDVALLAALALVSAVLLFWATGSKILAAGFVAGLAVAAGGVLLVRRLFPTAA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
GGEAATPDWTMLRQAVNHDDVAIAVTDRTGRMVCANDLFATWMGGFVTPPGLPVDGRGAE
CCCCCCCCHHHHHHHCCCCCEEEEEECCCCCEEEHHHHHHHHHCCCCCCCCCCCCCCCHH
LLKNAGRTAWRDGEGRADDLAIGPLRLRAQVMRTGQAEDYLVWRFAAIERFDLVAELTRH
HHHHCCCCCCCCCCCCCCCEEECHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHH
LGGPAGRTLGHAGVMAALVNSEGRLRAANEAFLLRALGEEDARHYAGRDVAAMLRIDDGG
CCCCCCCHHHHHHHHHHHHCCCCCEEECCHHHHHHHHCHHHHHHHCCCCEEEEEEECCCC
ALYFAREGDRATPVRLIQIPLVSSDSNSPVLLAMLDEEMGPADRGTAQTYVETLLSLLPF
EEEEEECCCCCCCEEEEEEEEEECCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCC
GLALVDRDGRFLYMNRAFKRAANLPEAKMPRYPGDIVVGEDKGPLADMIRRHSSGQQVGG
CEEEEECCCCEEEEEHHHHHHCCCCCCCCCCCCCCEEEECCCCCHHHHHHHCCCCCCCCC
DLSIRLAGQSGDPVSMRVVGVRGLGEAAVLLSLKDSSEESRLKRQVAQASKMQAVGQLAG
CEEEEEECCCCCCEEEEEEEECCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHH
GVAHDFNNILTAVLGACDLMLMRHTPGDSDYDDIQQIRSNANRAASLTRQLLAFSRQQTL
HHHHHHHHHHHHHHHHHHHEEEECCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHC
RPQILQLPDVISEVSHLLKRLIGETVQLSVHHGRGLGAVRADPGQLEQVIINLAVNARDA
CHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCC
MPGGGTLTIETYPVSATDVRQMGNEFMPPADYCALKVSDTGTGIPADILPKIFEPFFTTK
CCCCCEEEEEEECCCHHHHHHHCCCCCCCCHHEEEEECCCCCCCCHHHHHHHHHHHCCCC
DVGKGTGLGLSTVYGIIKQSAGFIFADSKPGEGTSFTIYLPVHRVAGDAPAAPQPPAKPK
CCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCEEEEEEEHHHHCCCCCCCCCCCCCCC
KSQWGSGTILLVEDEDMVRAVAERALARAGYTVVTAAQGEEGLERFAGMEKVDLVISDVV
CCCCCCCEEEEECCHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHCCCHHHHHHHHHHH
MPTMDGSAMVRAMRARRPGLPVLFMSGYAEEQLRQSIDIDNVSFLPKPFSVAQLAEATSA
HCCCCHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
ALDEAAHRGGRDG
HHHHHHHCCCCCC
>Mature Secondary Structure 
PPAALSRLDVALLAALALVSAVLLFWATGSKILAAGFVAGLAVAAGGVLLVRRLFPTAA
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
GGEAATPDWTMLRQAVNHDDVAIAVTDRTGRMVCANDLFATWMGGFVTPPGLPVDGRGAE
CCCCCCCCHHHHHHHCCCCCEEEEEECCCCCEEEHHHHHHHHHCCCCCCCCCCCCCCCHH
LLKNAGRTAWRDGEGRADDLAIGPLRLRAQVMRTGQAEDYLVWRFAAIERFDLVAELTRH
HHHHCCCCCCCCCCCCCCCEEECHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHH
LGGPAGRTLGHAGVMAALVNSEGRLRAANEAFLLRALGEEDARHYAGRDVAAMLRIDDGG
CCCCCCCHHHHHHHHHHHHCCCCCEEECCHHHHHHHHCHHHHHHHCCCCEEEEEEECCCC
ALYFAREGDRATPVRLIQIPLVSSDSNSPVLLAMLDEEMGPADRGTAQTYVETLLSLLPF
EEEEEECCCCCCCEEEEEEEEEECCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCC
GLALVDRDGRFLYMNRAFKRAANLPEAKMPRYPGDIVVGEDKGPLADMIRRHSSGQQVGG
CEEEEECCCCEEEEEHHHHHHCCCCCCCCCCCCCCEEEECCCCCHHHHHHHCCCCCCCCC
DLSIRLAGQSGDPVSMRVVGVRGLGEAAVLLSLKDSSEESRLKRQVAQASKMQAVGQLAG
CEEEEEECCCCCCEEEEEEEECCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHH
GVAHDFNNILTAVLGACDLMLMRHTPGDSDYDDIQQIRSNANRAASLTRQLLAFSRQQTL
HHHHHHHHHHHHHHHHHHHEEEECCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHC
RPQILQLPDVISEVSHLLKRLIGETVQLSVHHGRGLGAVRADPGQLEQVIINLAVNARDA
CHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCC
MPGGGTLTIETYPVSATDVRQMGNEFMPPADYCALKVSDTGTGIPADILPKIFEPFFTTK
CCCCCEEEEEEECCCHHHHHHHCCCCCCCCHHEEEEECCCCCCCCHHHHHHHHHHHCCCC
DVGKGTGLGLSTVYGIIKQSAGFIFADSKPGEGTSFTIYLPVHRVAGDAPAAPQPPAKPK
CCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCEEEEEEEHHHHCCCCCCCCCCCCCCC
KSQWGSGTILLVEDEDMVRAVAERALARAGYTVVTAAQGEEGLERFAGMEKVDLVISDVV
CCCCCCCEEEEECCHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHCCCHHHHHHHHHHH
MPTMDGSAMVRAMRARRPGLPVLFMSGYAEEQLRQSIDIDNVSFLPKPFSVAQLAEATSA
HCCCCHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
ALDEAAHRGGRDG
HHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA