| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is zraS [C]
Identifier: 103487212
GI number: 103487212
Start: 1816029
End: 1818410
Strand: Reverse
Name: zraS [C]
Synonym: Sala_1727
Alternate gene names: 103487212
Gene position: 1818410-1816029 (Counterclockwise)
Preceding gene: 103487213
Following gene: 103487211
Centisome position: 54.36
GC content: 66.67
Gene sequence:
>2382_bases ATGCCGCCTGCGGCACTGTCGCGGCTCGATGTCGCCTTGCTCGCGGCGCTCGCGCTCGTCTCGGCCGTGCTGCTGTTCTG GGCCACGGGCAGCAAGATCCTTGCCGCGGGCTTTGTTGCGGGACTTGCGGTGGCCGCCGGCGGCGTGCTGCTGGTGCGGC GCCTGTTTCCCACCGCGGCGGGAGGCGAAGCCGCGACACCTGACTGGACCATGCTGCGCCAGGCCGTCAATCACGACGAT GTCGCGATTGCCGTCACCGACCGCACGGGCCGCATGGTTTGCGCCAACGACCTGTTCGCCACCTGGATGGGCGGTTTTGT CACACCCCCCGGCCTGCCGGTCGACGGACGCGGCGCCGAACTGCTCAAAAACGCCGGGCGGACGGCGTGGCGCGATGGCG AGGGACGCGCCGATGACCTTGCGATCGGCCCGCTGCGATTGCGCGCGCAGGTGATGCGCACGGGGCAGGCGGAGGATTAT CTGGTCTGGCGCTTTGCCGCGATCGAACGGTTCGATCTGGTCGCCGAACTCACGCGGCATCTGGGCGGTCCGGCGGGCCG GACGCTGGGCCATGCCGGGGTCATGGCGGCGCTGGTCAACAGCGAAGGCCGCCTTCGCGCTGCCAATGAGGCGTTTCTGC TGCGCGCACTCGGCGAGGAGGATGCCCGCCATTACGCCGGGCGCGATGTTGCGGCGATGTTGCGTATCGACGATGGCGGC GCCCTTTATTTTGCGCGCGAGGGCGACCGCGCGACGCCGGTGCGGCTGATCCAGATCCCGCTCGTTTCGTCCGACAGCAA TTCGCCAGTGCTGCTCGCGATGCTCGACGAGGAGATGGGGCCGGCCGACCGCGGCACCGCGCAAACCTATGTCGAAACCT TGCTTTCGCTGCTGCCCTTCGGGCTGGCGCTCGTCGACCGCGACGGACGCTTCCTTTACATGAATCGCGCTTTCAAGCGT GCTGCCAACCTTCCTGAAGCCAAGATGCCGCGTTATCCGGGCGACATCGTCGTCGGCGAGGACAAGGGGCCGCTGGCCGA CATGATCCGTCGTCACAGCAGCGGGCAACAGGTCGGCGGCGACCTGTCGATCCGCTTGGCTGGGCAGAGCGGCGATCCGG TGTCGATGCGCGTTGTCGGGGTGCGGGGCCTCGGCGAAGCGGCGGTGCTTTTGAGTCTCAAGGATTCGAGCGAGGAATCG CGCCTCAAGCGCCAGGTCGCGCAGGCGTCGAAGATGCAGGCGGTGGGCCAGCTTGCGGGCGGTGTCGCGCATGATTTCAA CAATATCCTGACCGCGGTGCTCGGTGCGTGCGACCTGATGCTGATGCGGCATACGCCGGGCGACAGCGACTATGACGACA TCCAGCAGATTCGCAGCAACGCCAATCGCGCCGCCAGCCTGACGCGGCAATTGCTTGCCTTTTCGCGGCAACAGACGCTG CGACCGCAGATATTGCAACTGCCCGACGTGATTTCGGAGGTGTCGCATTTGTTGAAACGCCTGATCGGCGAGACGGTGCA GCTTTCGGTGCATCACGGTCGCGGCCTCGGGGCGGTGCGCGCCGACCCCGGCCAGCTCGAACAGGTGATCATCAACCTGG CCGTCAACGCGCGCGACGCGATGCCCGGCGGCGGGACGCTGACGATCGAAACCTATCCGGTGTCGGCCACCGATGTGCGC CAGATGGGCAATGAGTTCATGCCACCCGCCGATTATTGCGCGCTGAAGGTCAGCGATACGGGCACCGGCATTCCCGCCGA CATATTGCCCAAGATTTTCGAACCCTTTTTCACGACCAAGGATGTGGGCAAAGGGACGGGGCTCGGCCTGTCGACCGTTT ATGGCATCATCAAGCAGTCGGCGGGCTTCATCTTTGCCGACAGCAAGCCGGGAGAGGGCACCAGCTTTACCATCTATCTG CCCGTCCACCGCGTCGCGGGTGACGCCCCGGCGGCGCCGCAGCCGCCCGCCAAGCCCAAAAAGAGCCAGTGGGGCAGCGG GACGATCCTGCTCGTCGAAGACGAGGACATGGTGCGTGCGGTCGCGGAACGCGCCCTGGCCCGCGCGGGTTATACGGTCG TCACCGCCGCGCAGGGCGAGGAAGGACTCGAACGTTTTGCCGGGATGGAGAAGGTCGATTTGGTCATCAGCGATGTCGTG ATGCCGACGATGGACGGGTCGGCGATGGTGCGCGCGATGCGCGCCAGGCGCCCCGGCCTGCCGGTGCTGTTCATGTCGGG CTATGCCGAGGAACAGCTGCGCCAGTCGATCGACATCGACAATGTGTCTTTCCTGCCCAAACCCTTCTCGGTCGCGCAGC TGGCCGAGGCGACCTCGGCGGCGCTGGACGAGGCCGCGCATCGCGGGGGCCGGGATGGCTGA
Upstream 100 bases:
>100_bases TCTGGTGACAAGCCGATAGAAAGAGTGTGATTTGACCGCGCAAAGCCTGTCCTCCGCTGATGGTAACGTCATCGGGGAGA CGGGCCCTGCGGACACGATC
Downstream 100 bases:
>100_bases GCGGCGCATCCTGATCGTCGAGGATGATGTGCTGATCGGCATGATGCTGGTCGACATGTTCGACGCGCTCGGCCTGCCCG AACCCGCGCAGGCGACGAGC
Product: periplasmic sensor hybrid histidine kinase
Products: NA
Alternate protein names: Blue-light-activated histidine kinase; Response regulator [H]
Number of amino acids: Translated: 793; Mature: 792
Protein sequence:
>793_residues MPPAALSRLDVALLAALALVSAVLLFWATGSKILAAGFVAGLAVAAGGVLLVRRLFPTAAGGEAATPDWTMLRQAVNHDD VAIAVTDRTGRMVCANDLFATWMGGFVTPPGLPVDGRGAELLKNAGRTAWRDGEGRADDLAIGPLRLRAQVMRTGQAEDY LVWRFAAIERFDLVAELTRHLGGPAGRTLGHAGVMAALVNSEGRLRAANEAFLLRALGEEDARHYAGRDVAAMLRIDDGG ALYFAREGDRATPVRLIQIPLVSSDSNSPVLLAMLDEEMGPADRGTAQTYVETLLSLLPFGLALVDRDGRFLYMNRAFKR AANLPEAKMPRYPGDIVVGEDKGPLADMIRRHSSGQQVGGDLSIRLAGQSGDPVSMRVVGVRGLGEAAVLLSLKDSSEES RLKRQVAQASKMQAVGQLAGGVAHDFNNILTAVLGACDLMLMRHTPGDSDYDDIQQIRSNANRAASLTRQLLAFSRQQTL RPQILQLPDVISEVSHLLKRLIGETVQLSVHHGRGLGAVRADPGQLEQVIINLAVNARDAMPGGGTLTIETYPVSATDVR QMGNEFMPPADYCALKVSDTGTGIPADILPKIFEPFFTTKDVGKGTGLGLSTVYGIIKQSAGFIFADSKPGEGTSFTIYL PVHRVAGDAPAAPQPPAKPKKSQWGSGTILLVEDEDMVRAVAERALARAGYTVVTAAQGEEGLERFAGMEKVDLVISDVV MPTMDGSAMVRAMRARRPGLPVLFMSGYAEEQLRQSIDIDNVSFLPKPFSVAQLAEATSAALDEAAHRGGRDG
Sequences:
>Translated_793_residues MPPAALSRLDVALLAALALVSAVLLFWATGSKILAAGFVAGLAVAAGGVLLVRRLFPTAAGGEAATPDWTMLRQAVNHDD VAIAVTDRTGRMVCANDLFATWMGGFVTPPGLPVDGRGAELLKNAGRTAWRDGEGRADDLAIGPLRLRAQVMRTGQAEDY LVWRFAAIERFDLVAELTRHLGGPAGRTLGHAGVMAALVNSEGRLRAANEAFLLRALGEEDARHYAGRDVAAMLRIDDGG ALYFAREGDRATPVRLIQIPLVSSDSNSPVLLAMLDEEMGPADRGTAQTYVETLLSLLPFGLALVDRDGRFLYMNRAFKR AANLPEAKMPRYPGDIVVGEDKGPLADMIRRHSSGQQVGGDLSIRLAGQSGDPVSMRVVGVRGLGEAAVLLSLKDSSEES RLKRQVAQASKMQAVGQLAGGVAHDFNNILTAVLGACDLMLMRHTPGDSDYDDIQQIRSNANRAASLTRQLLAFSRQQTL RPQILQLPDVISEVSHLLKRLIGETVQLSVHHGRGLGAVRADPGQLEQVIINLAVNARDAMPGGGTLTIETYPVSATDVR QMGNEFMPPADYCALKVSDTGTGIPADILPKIFEPFFTTKDVGKGTGLGLSTVYGIIKQSAGFIFADSKPGEGTSFTIYL PVHRVAGDAPAAPQPPAKPKKSQWGSGTILLVEDEDMVRAVAERALARAGYTVVTAAQGEEGLERFAGMEKVDLVISDVV MPTMDGSAMVRAMRARRPGLPVLFMSGYAEEQLRQSIDIDNVSFLPKPFSVAQLAEATSAALDEAAHRGGRDG >Mature_792_residues PPAALSRLDVALLAALALVSAVLLFWATGSKILAAGFVAGLAVAAGGVLLVRRLFPTAAGGEAATPDWTMLRQAVNHDDV AIAVTDRTGRMVCANDLFATWMGGFVTPPGLPVDGRGAELLKNAGRTAWRDGEGRADDLAIGPLRLRAQVMRTGQAEDYL VWRFAAIERFDLVAELTRHLGGPAGRTLGHAGVMAALVNSEGRLRAANEAFLLRALGEEDARHYAGRDVAAMLRIDDGGA LYFAREGDRATPVRLIQIPLVSSDSNSPVLLAMLDEEMGPADRGTAQTYVETLLSLLPFGLALVDRDGRFLYMNRAFKRA ANLPEAKMPRYPGDIVVGEDKGPLADMIRRHSSGQQVGGDLSIRLAGQSGDPVSMRVVGVRGLGEAAVLLSLKDSSEESR LKRQVAQASKMQAVGQLAGGVAHDFNNILTAVLGACDLMLMRHTPGDSDYDDIQQIRSNANRAASLTRQLLAFSRQQTLR PQILQLPDVISEVSHLLKRLIGETVQLSVHHGRGLGAVRADPGQLEQVIINLAVNARDAMPGGGTLTIETYPVSATDVRQ MGNEFMPPADYCALKVSDTGTGIPADILPKIFEPFFTTKDVGKGTGLGLSTVYGIIKQSAGFIFADSKPGEGTSFTIYLP VHRVAGDAPAAPQPPAKPKKSQWGSGTILLVEDEDMVRAVAERALARAGYTVVTAAQGEEGLERFAGMEKVDLVISDVVM PTMDGSAMVRAMRARRPGLPVLFMSGYAEEQLRQSIDIDNVSFLPKPFSVAQLAEATSAALDEAAHRGGRDG
Specific function: Photosensitive kinase and response regulator that is involved in increased bacterial virulence upon exposure to light [H]
COG id: COG0642
COG function: function code T; Signal transduction histidine kinase
Gene ontology:
Cell location: Integral Membrane Protein. Inner Membrane [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 response regulatory domain [H]
Homologues:
Organism=Escherichia coli, GI1790436, Length=248, Percent_Identity=31.4516129032258, Blast_Score=113, Evalue=5e-26, Organism=Escherichia coli, GI1788549, Length=256, Percent_Identity=30.46875, Blast_Score=106, Evalue=5e-24, Organism=Escherichia coli, GI145693157, Length=435, Percent_Identity=25.0574712643678, Blast_Score=94, Evalue=3e-20, Organism=Escherichia coli, GI1788713, Length=289, Percent_Identity=28.0276816608997, Blast_Score=90, Evalue=5e-19, Organism=Escherichia coli, GI87081816, Length=254, Percent_Identity=28.3464566929134, Blast_Score=83, Evalue=6e-17, Organism=Escherichia coli, GI1790300, Length=267, Percent_Identity=28.4644194756554, Blast_Score=83, Evalue=7e-17, Organism=Escherichia coli, GI48994928, Length=215, Percent_Identity=33.0232558139535, Blast_Score=78, Evalue=2e-15, Organism=Escherichia coli, GI1790299, Length=106, Percent_Identity=36.7924528301887, Blast_Score=72, Evalue=2e-13, Organism=Escherichia coli, GI1788905, Length=123, Percent_Identity=36.5853658536585, Blast_Score=64, Evalue=3e-11, Organism=Escherichia coli, GI1790346, Length=242, Percent_Identity=26.0330578512397, Blast_Score=64, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR011006 - InterPro: IPR001610 - InterPro: IPR000014 - InterPro: IPR000700 - InterPro: IPR013767 - InterPro: IPR004358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 - InterPro: IPR001789 [H]
Pfam domain/function: PF02518 HATPase_c; PF00512 HisKA; PF00989 PAS; PF00072 Response_reg [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 84455; Mature: 84324
Theoretical pI: Translated: 6.27; Mature: 6.27
Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPPAALSRLDVALLAALALVSAVLLFWATGSKILAAGFVAGLAVAAGGVLLVRRLFPTAA CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC GGEAATPDWTMLRQAVNHDDVAIAVTDRTGRMVCANDLFATWMGGFVTPPGLPVDGRGAE CCCCCCCCHHHHHHHCCCCCEEEEEECCCCCEEEHHHHHHHHHCCCCCCCCCCCCCCCHH LLKNAGRTAWRDGEGRADDLAIGPLRLRAQVMRTGQAEDYLVWRFAAIERFDLVAELTRH HHHHCCCCCCCCCCCCCCCEEECHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHH LGGPAGRTLGHAGVMAALVNSEGRLRAANEAFLLRALGEEDARHYAGRDVAAMLRIDDGG CCCCCCCHHHHHHHHHHHHCCCCCEEECCHHHHHHHHCHHHHHHHCCCCEEEEEEECCCC ALYFAREGDRATPVRLIQIPLVSSDSNSPVLLAMLDEEMGPADRGTAQTYVETLLSLLPF EEEEEECCCCCCCEEEEEEEEEECCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCC GLALVDRDGRFLYMNRAFKRAANLPEAKMPRYPGDIVVGEDKGPLADMIRRHSSGQQVGG CEEEEECCCCEEEEEHHHHHHCCCCCCCCCCCCCCEEEECCCCCHHHHHHHCCCCCCCCC DLSIRLAGQSGDPVSMRVVGVRGLGEAAVLLSLKDSSEESRLKRQVAQASKMQAVGQLAG CEEEEEECCCCCCEEEEEEEECCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHH GVAHDFNNILTAVLGACDLMLMRHTPGDSDYDDIQQIRSNANRAASLTRQLLAFSRQQTL HHHHHHHHHHHHHHHHHHHEEEECCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHC RPQILQLPDVISEVSHLLKRLIGETVQLSVHHGRGLGAVRADPGQLEQVIINLAVNARDA CHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCC MPGGGTLTIETYPVSATDVRQMGNEFMPPADYCALKVSDTGTGIPADILPKIFEPFFTTK CCCCCEEEEEEECCCHHHHHHHCCCCCCCCHHEEEEECCCCCCCCHHHHHHHHHHHCCCC DVGKGTGLGLSTVYGIIKQSAGFIFADSKPGEGTSFTIYLPVHRVAGDAPAAPQPPAKPK CCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCEEEEEEEHHHHCCCCCCCCCCCCCCC KSQWGSGTILLVEDEDMVRAVAERALARAGYTVVTAAQGEEGLERFAGMEKVDLVISDVV CCCCCCCEEEEECCHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHCCCHHHHHHHHHHH MPTMDGSAMVRAMRARRPGLPVLFMSGYAEEQLRQSIDIDNVSFLPKPFSVAQLAEATSA HCCCCHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH ALDEAAHRGGRDG HHHHHHHCCCCCC >Mature Secondary Structure PPAALSRLDVALLAALALVSAVLLFWATGSKILAAGFVAGLAVAAGGVLLVRRLFPTAA CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC GGEAATPDWTMLRQAVNHDDVAIAVTDRTGRMVCANDLFATWMGGFVTPPGLPVDGRGAE CCCCCCCCHHHHHHHCCCCCEEEEEECCCCCEEEHHHHHHHHHCCCCCCCCCCCCCCCHH LLKNAGRTAWRDGEGRADDLAIGPLRLRAQVMRTGQAEDYLVWRFAAIERFDLVAELTRH HHHHCCCCCCCCCCCCCCCEEECHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHH LGGPAGRTLGHAGVMAALVNSEGRLRAANEAFLLRALGEEDARHYAGRDVAAMLRIDDGG CCCCCCCHHHHHHHHHHHHCCCCCEEECCHHHHHHHHCHHHHHHHCCCCEEEEEEECCCC ALYFAREGDRATPVRLIQIPLVSSDSNSPVLLAMLDEEMGPADRGTAQTYVETLLSLLPF EEEEEECCCCCCCEEEEEEEEEECCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCC GLALVDRDGRFLYMNRAFKRAANLPEAKMPRYPGDIVVGEDKGPLADMIRRHSSGQQVGG CEEEEECCCCEEEEEHHHHHHCCCCCCCCCCCCCCEEEECCCCCHHHHHHHCCCCCCCCC DLSIRLAGQSGDPVSMRVVGVRGLGEAAVLLSLKDSSEESRLKRQVAQASKMQAVGQLAG CEEEEEECCCCCCEEEEEEEECCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHH GVAHDFNNILTAVLGACDLMLMRHTPGDSDYDDIQQIRSNANRAASLTRQLLAFSRQQTL HHHHHHHHHHHHHHHHHHHEEEECCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHC RPQILQLPDVISEVSHLLKRLIGETVQLSVHHGRGLGAVRADPGQLEQVIINLAVNARDA CHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCC MPGGGTLTIETYPVSATDVRQMGNEFMPPADYCALKVSDTGTGIPADILPKIFEPFFTTK CCCCCEEEEEEECCCHHHHHHHCCCCCCCCHHEEEEECCCCCCCCHHHHHHHHHHHCCCC DVGKGTGLGLSTVYGIIKQSAGFIFADSKPGEGTSFTIYLPVHRVAGDAPAAPQPPAKPK CCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCEEEEEEEHHHHCCCCCCCCCCCCCCC KSQWGSGTILLVEDEDMVRAVAERALARAGYTVVTAAQGEEGLERFAGMEKVDLVISDVV CCCCCCCEEEEECCHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHCCCHHHHHHHHHHH MPTMDGSAMVRAMRARRPGLPVLFMSGYAEEQLRQSIDIDNVSFLPKPFSVAQLAEATSA HCCCCHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH ALDEAAHRGGRDG HHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA