| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is exuT [H]
Identifier: 103487151
GI number: 103487151
Start: 1753403
End: 1754638
Strand: Reverse
Name: exuT [H]
Synonym: Sala_1666
Alternate gene names: 103487151
Gene position: 1754638-1753403 (Counterclockwise)
Preceding gene: 103487153
Following gene: 103487150
Centisome position: 52.45
GC content: 64.08
Gene sequence:
>1236_bases ATGGCGACGGCAGCAGCGCAGGGGGACCGGTCGACACGCATCGCGATCGTGCTGGTCACGCTGCTTTTCCTGGGCAATGC CCTCAACTATGTCGACCGGCAGGTTCTCGCTCTTCTGAAACCCACGCTGGAAGCCGAGTTCGGCTGGAGTGATTCGGATT ACGCGCATCTGGGCTCGACATTCCAGATCGCGGCTGCCGGGGCGCTTCTCGGTGTCGGGTGGTTCGTCGATCGTCTCGGG GTGCGCTGGGCCTATGCGATCGCGATATCGGTGTGGAGCCTGGCGGGCATGGCGCACGCGCTTGCGCAAAGCGTTCAGCA GTTTGTTGCGGCGCGCGTCGTGCTGGCGGTCGGGGAATCGGTCAGTACCCCCGCCGGTATCAAGACGGCGGCGACCTATC TGCCGGTGCGGCAGCGCAATATGGCGATCGGGCTGATCAATACCGCGCCCAACATCGGCGCGATTGTCACGCCGCTCCTG ATCCCGCCGCTGGCGCTGGCCTTTGGCTGGAAGGCCGCGTTTATCGCCACCGGTGCGCTCGGTTTTGTGTGGCTCGCATT CTGGCTTCCGGCGATGCGCAAAATGCGACCGCTCGGCGACCTCCCCGAACGCGCGAAAGTCGCATGGCGTCCGCTGCTTC GCGACCGCCGGACCTGGGCCGTGGTCGGCGCGAAGTTCTGCACCGATTGCGTGTGGTGGTTCGTGCTCTTCTGGATGCCC GACTTTTTCAGCCGGGAGTTCGGAATGAGCCAGGGGGCGCTCGGCCTGCCCATCGCAATTGTCTTCACGCTGGCGGCGCT CGGCGCGGTCACGTCGGGGGCGCTCTATCCGATCCTTCTCGGACGCGGTTTTTCGGTGGATCGCGCGCGCAAATTGTCGA TGTTCGTCTTCGCCCTCGCCGTGCTGGTGATGCCGCTCGCCATGTACACCACCAGTCCCTGGGTGGCAGCGCTGTGCGTC GGCCTCGGACTGTTTGCTCATCAGGGTTTTTCGACGAACATCTTTGGCATGACTGCCGACATCATCCCGCCGCTGCGCGT CGCGACCGTGATCGCGCTCGGCGCGGTCGCAGGCAATTTGTCCGGCACCGCGATCATCGAATTTGCTGGTTGGTCGCTTG GAAACGGGCTGGGTTACGGGCCGCTTTTTATAATCTGCAGCCTTGCCTATCTCACGGCGCTTCTGGTGATTCACCTTATC GTGCCGCGGCTCGAACTCGCTGAGTCGCGCGCCTAG
Upstream 100 bases:
>100_bases GTCCTACGGTATGTCCTACGGTGTCATATTTTTCTTCCCTTATCGGCAGCGGGCGCTAGGTTGCAAGTCGAAACAGCTCA AAGGGCGAGGGAGAGAGGTC
Downstream 100 bases:
>100_bases AGCGCGATGACATGATATTGACCCACCGTGATTGCCCCCTGAAGTTCGTCGGCAAGAAGCATCTCGCAGGACGGGCTGGT TGCCCGGACCAGAGACGCGC
Product: major facilitator transporter
Products: galacturonate [Cytoplasm]; Proton [Cytoplasm]; glucuronate [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 411; Mature: 410
Protein sequence:
>411_residues MATAAAQGDRSTRIAIVLVTLLFLGNALNYVDRQVLALLKPTLEAEFGWSDSDYAHLGSTFQIAAAGALLGVGWFVDRLG VRWAYAIAISVWSLAGMAHALAQSVQQFVAARVVLAVGESVSTPAGIKTAATYLPVRQRNMAIGLINTAPNIGAIVTPLL IPPLALAFGWKAAFIATGALGFVWLAFWLPAMRKMRPLGDLPERAKVAWRPLLRDRRTWAVVGAKFCTDCVWWFVLFWMP DFFSREFGMSQGALGLPIAIVFTLAALGAVTSGALYPILLGRGFSVDRARKLSMFVFALAVLVMPLAMYTTSPWVAALCV GLGLFAHQGFSTNIFGMTADIIPPLRVATVIALGAVAGNLSGTAIIEFAGWSLGNGLGYGPLFIICSLAYLTALLVIHLI VPRLELAESRA
Sequences:
>Translated_411_residues MATAAAQGDRSTRIAIVLVTLLFLGNALNYVDRQVLALLKPTLEAEFGWSDSDYAHLGSTFQIAAAGALLGVGWFVDRLG VRWAYAIAISVWSLAGMAHALAQSVQQFVAARVVLAVGESVSTPAGIKTAATYLPVRQRNMAIGLINTAPNIGAIVTPLL IPPLALAFGWKAAFIATGALGFVWLAFWLPAMRKMRPLGDLPERAKVAWRPLLRDRRTWAVVGAKFCTDCVWWFVLFWMP DFFSREFGMSQGALGLPIAIVFTLAALGAVTSGALYPILLGRGFSVDRARKLSMFVFALAVLVMPLAMYTTSPWVAALCV GLGLFAHQGFSTNIFGMTADIIPPLRVATVIALGAVAGNLSGTAIIEFAGWSLGNGLGYGPLFIICSLAYLTALLVIHLI VPRLELAESRA >Mature_410_residues ATAAAQGDRSTRIAIVLVTLLFLGNALNYVDRQVLALLKPTLEAEFGWSDSDYAHLGSTFQIAAAGALLGVGWFVDRLGV RWAYAIAISVWSLAGMAHALAQSVQQFVAARVVLAVGESVSTPAGIKTAATYLPVRQRNMAIGLINTAPNIGAIVTPLLI PPLALAFGWKAAFIATGALGFVWLAFWLPAMRKMRPLGDLPERAKVAWRPLLRDRRTWAVVGAKFCTDCVWWFVLFWMPD FFSREFGMSQGALGLPIAIVFTLAALGAVTSGALYPILLGRGFSVDRARKLSMFVFALAVLVMPLAMYTTSPWVAALCVG LGLFAHQGFSTNIFGMTADIIPPLRVATVIALGAVAGNLSGTAIIEFAGWSLGNGLGYGPLFIICSLAYLTALLVIHLIV PRLELAESRA
Specific function: Aldohexuronate transport system [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily. Phthalate permease family [H]
Homologues:
Organism=Homo sapiens, GI154350196, Length=368, Percent_Identity=22.554347826087, Blast_Score=70, Evalue=3e-12, Organism=Escherichia coli, GI2367193, Length=415, Percent_Identity=27.2289156626506, Blast_Score=137, Evalue=1e-33, Organism=Escherichia coli, GI2367379, Length=352, Percent_Identity=27.5568181818182, Blast_Score=132, Evalue=3e-32, Organism=Escherichia coli, GI87082320, Length=424, Percent_Identity=25.9433962264151, Blast_Score=124, Evalue=1e-29, Organism=Escherichia coli, GI1789515, Length=399, Percent_Identity=24.3107769423559, Blast_Score=99, Evalue=5e-22, Organism=Escherichia coli, GI1789152, Length=443, Percent_Identity=21.2189616252822, Blast_Score=89, Evalue=4e-19, Organism=Drosophila melanogaster, GI19920686, Length=380, Percent_Identity=22.8947368421053, Blast_Score=67, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004744 - InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 43954; Mature: 43822
Theoretical pI: Translated: 10.08; Mature: 10.08
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATAAAQGDRSTRIAIVLVTLLFLGNALNYVDRQVLALLKPTLEAEFGWSDSDYAHLGST CCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCC FQIAAAGALLGVGWFVDRLGVRWAYAIAISVWSLAGMAHALAQSVQQFVAARVVLAVGES HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC VSTPAGIKTAATYLPVRQRNMAIGLINTAPNIGAIVTPLLIPPLALAFGWKAAFIATGAL CCCCCCHHHHHHHCCHHHCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHH GFVWLAFWLPAMRKMRPLGDLPERAKVAWRPLLRDRRTWAVVGAKFCTDCVWWFVLFWMP HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH DFFSREFGMSQGALGLPIAIVFTLAALGAVTSGALYPILLGRGFSVDRARKLSMFVFALA HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHH VLVMPLAMYTTSPWVAALCVGLGLFAHQGFSTNIFGMTADIIPPLRVATVIALGAVAGNL HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHCCC SGTAIIEFAGWSLGNGLGYGPLFIICSLAYLTALLVIHLIVPRLELAESRA CCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure ATAAAQGDRSTRIAIVLVTLLFLGNALNYVDRQVLALLKPTLEAEFGWSDSDYAHLGST CCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCC FQIAAAGALLGVGWFVDRLGVRWAYAIAISVWSLAGMAHALAQSVQQFVAARVVLAVGES HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC VSTPAGIKTAATYLPVRQRNMAIGLINTAPNIGAIVTPLLIPPLALAFGWKAAFIATGAL CCCCCCHHHHHHHCCHHHCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHH GFVWLAFWLPAMRKMRPLGDLPERAKVAWRPLLRDRRTWAVVGAKFCTDCVWWFVLFWMP HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH DFFSREFGMSQGALGLPIAIVFTLAALGAVTSGALYPILLGRGFSVDRARKLSMFVFALA HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHH VLVMPLAMYTTSPWVAALCVGLGLFAHQGFSTNIFGMTADIIPPLRVATVIALGAVAGNL HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHCCC SGTAIIEFAGWSLGNGLGYGPLFIICSLAYLTALLVIHLIVPRLELAESRA CCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: galacturonate [Periplasm]; Proton [Periplasm]; glucuronate [Periplasm] [C]
Specific reaction: Proton [Periplasm] + galacturonate [Periplasm] = galacturonate [Cytoplasm] + Proton [Cytoplasm] Proton [Periplasm] + glucuronate [Periplasm] = Proton [Cytoplasm] + glucuronate [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]