| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
Click here to switch to the map view.
The map label for this gene is 103487132
Identifier: 103487132
GI number: 103487132
Start: 1730285
End: 1730851
Strand: Reverse
Name: 103487132
Synonym: Sala_1647
Alternate gene names: NA
Gene position: 1730851-1730285 (Counterclockwise)
Preceding gene: 103487133
Following gene: 103487131
Centisome position: 51.74
GC content: 64.02
Gene sequence:
>567_bases ATGTCGGCTCATTCCAGCGAACGACGTCAACTCATCTGTCACCCCGGCACGCCCGCGCGCGCCGTGCGGTCGGTTGCGGT CGAGGTCAGCCTGTCGTTCGACGATGGCTTCGCACTTCGCTTCCTGATCGACGGGGCGATCGCCGATCTGGTGCTTCCCG ATGGCGAGGGCGAGCTGGTCATCGCCGACAGCGCGACCGACGGATTGTGGGAAAGCACCTGTTTCGAGGCGTTCCTGACC GAAGAGGGGCAGCCCGACTATACCGAGTTCAACTATAGCCCCGACGGCCGCTGGGCCTGTTACCAGTTCGACGATTATCG GTCGCTTCTGCGCTCCGACCAACTGGCGCCTTGGGAAATCGCAGCCGAGCGCAGCGAGCAGAGCTATGCGCTGCGCGTCG AACCCGGCATCTTTCCCGATGTCGGGGCCAAGCTGGGCCTCTCTGCCGTGATCGAGGAACGCGACGGCACCAAAAGCTAT TGGGCGCTCGCGCATCCGCCGGGGCAGCCCGATTTCCATCATCCCGATTGCTTTGCCTTAACGCTTGAGGCACGCGGGCG GGCATGA
Upstream 100 bases:
>100_bases AAAAATGGCATTGATCCGCGGCGATTGGGACAGCATTTCGAACTTGGCAAAAGGGAAGAACGGTCCTTCGACAGGCTCAG GACGAACGGAGAGGGACTGA
Downstream 100 bases:
>100_bases CTATCTCCTTCGGTATCGACCGCCTGCTCGCCGACCCGGATCTCCGCAAACCGCTCGAAGGCAGGCGCGTCGCGCTGCTG GCGCATCCGGCATCGGTTAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 188; Mature: 187
Protein sequence:
>188_residues MSAHSSERRQLICHPGTPARAVRSVAVEVSLSFDDGFALRFLIDGAIADLVLPDGEGELVIADSATDGLWESTCFEAFLT EEGQPDYTEFNYSPDGRWACYQFDDYRSLLRSDQLAPWEIAAERSEQSYALRVEPGIFPDVGAKLGLSAVIEERDGTKSY WALAHPPGQPDFHHPDCFALTLEARGRA
Sequences:
>Translated_188_residues MSAHSSERRQLICHPGTPARAVRSVAVEVSLSFDDGFALRFLIDGAIADLVLPDGEGELVIADSATDGLWESTCFEAFLT EEGQPDYTEFNYSPDGRWACYQFDDYRSLLRSDQLAPWEIAAERSEQSYALRVEPGIFPDVGAKLGLSAVIEERDGTKSY WALAHPPGQPDFHHPDCFALTLEARGRA >Mature_187_residues SAHSSERRQLICHPGTPARAVRSVAVEVSLSFDDGFALRFLIDGAIADLVLPDGEGELVIADSATDGLWESTCFEAFLTE EGQPDYTEFNYSPDGRWACYQFDDYRSLLRSDQLAPWEIAAERSEQSYALRVEPGIFPDVGAKLGLSAVIEERDGTKSYW ALAHPPGQPDFHHPDCFALTLEARGRA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20783; Mature: 20652
Theoretical pI: Translated: 4.23; Mature: 4.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAHSSERRQLICHPGTPARAVRSVAVEVSLSFDDGFALRFLIDGAIADLVLPDGEGELV CCCCCCCCCEEEECCCCHHHHHEEEEEEEEEECCCCEEEEEEECCHHEEEEEECCCCCEE IADSATDGLWESTCFEAFLTEEGQPDYTEFNYSPDGRWACYQFDDYRSLLRSDQLAPWEI EEECCCCCCHHHHHHHHHHCCCCCCCCEEECCCCCCCEEEEEEHHHHHHHHHCCCCCCCE AAERSEQSYALRVEPGIFPDVGAKLGLSAVIEERDGTKSYWALAHPPGQPDFHHPDCFAL EECCCCCCEEEEECCCCCCCCCCCCCHHEEEECCCCCCEEEEEECCCCCCCCCCCCEEEE TLEARGRA EEECCCCC >Mature Secondary Structure SAHSSERRQLICHPGTPARAVRSVAVEVSLSFDDGFALRFLIDGAIADLVLPDGEGELV CCCCCCCCEEEECCCCHHHHHEEEEEEEEEECCCCEEEEEEECCHHEEEEEECCCCCEE IADSATDGLWESTCFEAFLTEEGQPDYTEFNYSPDGRWACYQFDDYRSLLRSDQLAPWEI EEECCCCCCHHHHHHHHHHCCCCCCCCEEECCCCCCCEEEEEEHHHHHHHHHCCCCCCCE AAERSEQSYALRVEPGIFPDVGAKLGLSAVIEERDGTKSYWALAHPPGQPDFHHPDCFAL EECCCCCCEEEEECCCCCCCCCCCCCHHEEEECCCCCCEEEEEECCCCCCCCCCCCEEEE TLEARGRA EEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA