Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103487050

Identifier: 103487050

GI number: 103487050

Start: 1635235

End: 1636851

Strand: Reverse

Name: 103487050

Synonym: Sala_1565

Alternate gene names: NA

Gene position: 1636851-1635235 (Counterclockwise)

Preceding gene: 103487051

Following gene: 103487049

Centisome position: 48.93

GC content: 60.11

Gene sequence:

>1617_bases
GTGATCATTCCGAGAAGGCATTTCCTGTCAAATGCGGCGGGCGCCGGATGGATTTTCCTTGCCGGTGCCTCCGCTCCGGA
ACAGCCGGTAATAGCCGTTCGCCGCTTTGGCGCGGCGGGCAATTGGGATGAACGTTCGGGTCAGGGTTCGGACGACGGGT
CGGCAATCCAGTCGGCTATTGATTTCGCCGCCCGGATGGGTGGCGGGACGGTTCGGCTTGATTCGGCGCGGGTTTACAAA
ACCTCGTCGGATCTGATCGTGAAAGAGAATGTCCGGCTCGACTTGCGCGGATCGACAGTCGTCGGCCGCTTCGATAGCGG
CAATCACAGCGTTTTCAGGATGCGAAGCCGTTCGGAGCTGTTCGGGGGAAAGGTCAAGGTTGTCTCGACGGGACAGCCCG
GGCTGCAGGCCGCTGCGCACTGTGGCGTGTCGGCAGGATGCCGCCTCGGCGATCCCAATGAGGTTGCCCGGCCCGATCCC
GACAATGATCCCCACAGCTTTGCGATATATGACCTTCTGATCCAGAGTGACAAATGGGTGCCGGATGGCGCCGGGGGGCA
CGTCGGGGCGCCGGCAATTCAGATCATCGGTTGCAGCCATTATCGAATCGAAAATATCACAATCCCCTCGTCGGACCGGA
TGTATGGGGCCGTTCACGTCGACTGGGGACATATAGGCCCAATCTCGACAGTCGACCGGGCGCAAGCCCAGACGATGAAC
AAGCGTGCCTATCTGGATGGCATGGCTTATGTCATCCCTTCGCGGCACGGCATCATCCGGAGGATCCGGGCCGGAGCCTT
GTCCGCGCCATCGACCGGTGTCGACCGGGGCAGTTTCTGTGTCAGGATATCGGGCGCCCATTCGATCACAGTGGCGGACT
GTTATGCGGAAAGCGTGACCTATCAGGCCTATGCTCACGAGGTCGGTGACCTTGGTGCCGAATTCGTGCTGCCACAGGAC
CGCGACCTGCTGGGCAAGCGCATCCGATTCGAGAATTGCCGAATCGGGGGCAGCGCGACCGGACAGGTGTTTGAACTGCG
CGGTTATGCCGACAATATCGCCAGGGCGATAACTGACGGGTATGAAAATATGGTCGATCCGCTGGTTGAGTGCGATGTCG
TTTTTGACGGGGTAACGGGAACCGGTCAGGGCGCGGGCGCACGCAATGCGGGTGGCCGCGTTCTGCAGATACGGGGTGGG
GTTATCCGCAATGCCGACCTTTCGCGATTCCGCGATGGCATTCTGGTCGACGAGCGGGCATCTGATGTCCGCATCGAAAA
CGTCGCCTGTTACGATTGCGAACACGAGGGTATTCTTGTGCATCACCCCGTATATCCGCCCGAAGACATCGTCATCGAAA
ACGCCCACACATATGGCAACGGACGGAATGCCGCCTTCAGGGATGCGGCCGGAATCCATCTCGGAACGTCAAGGCGTTGC
CGCATTATCCGCGGCCGGTTCGGATTAAGGGGCTTGGCAAGGGATGGGACGCAGGAATTCGCCTTTCGGATCGGATCGGG
CGCGGTGGCGGCTGTCGTCGAGGAGCCCCTCATTCATTCGCGTGGCAAGAACGGGAAGATTTCTTTCATTCAGCGCGGTG
ATCTGACCCGTCTGTAA

Upstream 100 bases:

>100_bases
CGGTGGTTACGGGCCGGGCACCCATGCTTTTCGCGGTCATCTGTCACTGGTAGGATACCCGCGGATTCATCCCTGGCTGC
CATCATCACGGGACAGGCGC

Downstream 100 bases:

>100_bases
GTCCGCGCCGCAGCGGCCTGATGATATGCGCGGGGAAGGTCGACACTCATGCATTGAGAGCGGGAAGGGCGGCGTCGCGC
TTTTCCGGGCCTGCGCTTGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 538; Mature: 538

Protein sequence:

>538_residues
MIIPRRHFLSNAAGAGWIFLAGASAPEQPVIAVRRFGAAGNWDERSGQGSDDGSAIQSAIDFAARMGGGTVRLDSARVYK
TSSDLIVKENVRLDLRGSTVVGRFDSGNHSVFRMRSRSELFGGKVKVVSTGQPGLQAAAHCGVSAGCRLGDPNEVARPDP
DNDPHSFAIYDLLIQSDKWVPDGAGGHVGAPAIQIIGCSHYRIENITIPSSDRMYGAVHVDWGHIGPISTVDRAQAQTMN
KRAYLDGMAYVIPSRHGIIRRIRAGALSAPSTGVDRGSFCVRISGAHSITVADCYAESVTYQAYAHEVGDLGAEFVLPQD
RDLLGKRIRFENCRIGGSATGQVFELRGYADNIARAITDGYENMVDPLVECDVVFDGVTGTGQGAGARNAGGRVLQIRGG
VIRNADLSRFRDGILVDERASDVRIENVACYDCEHEGILVHHPVYPPEDIVIENAHTYGNGRNAAFRDAAGIHLGTSRRC
RIIRGRFGLRGLARDGTQEFAFRIGSGAVAAVVEEPLIHSRGKNGKISFIQRGDLTRL

Sequences:

>Translated_538_residues
MIIPRRHFLSNAAGAGWIFLAGASAPEQPVIAVRRFGAAGNWDERSGQGSDDGSAIQSAIDFAARMGGGTVRLDSARVYK
TSSDLIVKENVRLDLRGSTVVGRFDSGNHSVFRMRSRSELFGGKVKVVSTGQPGLQAAAHCGVSAGCRLGDPNEVARPDP
DNDPHSFAIYDLLIQSDKWVPDGAGGHVGAPAIQIIGCSHYRIENITIPSSDRMYGAVHVDWGHIGPISTVDRAQAQTMN
KRAYLDGMAYVIPSRHGIIRRIRAGALSAPSTGVDRGSFCVRISGAHSITVADCYAESVTYQAYAHEVGDLGAEFVLPQD
RDLLGKRIRFENCRIGGSATGQVFELRGYADNIARAITDGYENMVDPLVECDVVFDGVTGTGQGAGARNAGGRVLQIRGG
VIRNADLSRFRDGILVDERASDVRIENVACYDCEHEGILVHHPVYPPEDIVIENAHTYGNGRNAAFRDAAGIHLGTSRRC
RIIRGRFGLRGLARDGTQEFAFRIGSGAVAAVVEEPLIHSRGKNGKISFIQRGDLTRL
>Mature_538_residues
MIIPRRHFLSNAAGAGWIFLAGASAPEQPVIAVRRFGAAGNWDERSGQGSDDGSAIQSAIDFAARMGGGTVRLDSARVYK
TSSDLIVKENVRLDLRGSTVVGRFDSGNHSVFRMRSRSELFGGKVKVVSTGQPGLQAAAHCGVSAGCRLGDPNEVARPDP
DNDPHSFAIYDLLIQSDKWVPDGAGGHVGAPAIQIIGCSHYRIENITIPSSDRMYGAVHVDWGHIGPISTVDRAQAQTMN
KRAYLDGMAYVIPSRHGIIRRIRAGALSAPSTGVDRGSFCVRISGAHSITVADCYAESVTYQAYAHEVGDLGAEFVLPQD
RDLLGKRIRFENCRIGGSATGQVFELRGYADNIARAITDGYENMVDPLVECDVVFDGVTGTGQGAGARNAGGRVLQIRGG
VIRNADLSRFRDGILVDERASDVRIENVACYDCEHEGILVHHPVYPPEDIVIENAHTYGNGRNAAFRDAAGIHLGTSRRC
RIIRGRFGLRGLARDGTQEFAFRIGSGAVAAVVEEPLIHSRGKNGKISFIQRGDLTRL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 57830; Mature: 57830

Theoretical pI: Translated: 7.97; Mature: 7.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIIPRRHFLSNAAGAGWIFLAGASAPEQPVIAVRRFGAAGNWDERSGQGSDDGSAIQSAI
CCCCCHHHHCCCCCCCEEEEECCCCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHH
DFAARMGGGTVRLDSARVYKTSSDLIVKENVRLDLRGSTVVGRFDSGNHSVFRMRSRSEL
HHHHHCCCCEEEECCCEEEECCCCEEEECCEEEEECCCEEEEEECCCCCEEEEECCHHHH
FGGKVKVVSTGQPGLQAAAHCGVSAGCRLGDPNEVARPDPDNDPHSFAIYDLLIQSDKWV
CCCEEEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCC
PDGAGGHVGAPAIQIIGCSHYRIENITIPSSDRMYGAVHVDWGHIGPISTVDRAQAQTMN
CCCCCCCCCCCEEEEEECCCEEEEEEECCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHH
KRAYLDGMAYVIPSRHGIIRRIRAGALSAPSTGVDRGSFCVRISGAHSITVADCYAESVT
HHHHHCCEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCEEEEEEHHHHHHH
YQAYAHEVGDLGAEFVLPQDRDLLGKRIRFENCRIGGSATGQVFELRGYADNIARAITDG
HHHHHHHHHCCCCEEECCCCHHHHHHHEEECCEECCCCCCCEEEEECCCHHHHHHHHHHH
YENMVDPLVECDVVFDGVTGTGQGAGARNAGGRVLQIRGGVIRNADLSRFRDGILVDERA
HHHHHHHHHEEEEEEECCCCCCCCCCCCCCCCEEEEECCCEEECCCHHHHHCCEEEECCC
SDVRIENVACYDCEHEGILVHHPVYPPEDIVIENAHTYGNGRNAAFRDAAGIHLGTSRRC
CCEEEEEEEEEECCCCCEEEECCCCCCCCEEEECCEECCCCCCCCCCCCCCEEECCCCCE
RIIRGRFGLRGLARDGTQEFAFRIGSGAVAAVVEEPLIHSRGKNGKISFIQRGDLTRL
EEEECCCCCCCCCCCCCHHHHEEECCCCEEEHHHHHHHHCCCCCCCEEEEECCCCCCC
>Mature Secondary Structure
MIIPRRHFLSNAAGAGWIFLAGASAPEQPVIAVRRFGAAGNWDERSGQGSDDGSAIQSAI
CCCCCHHHHCCCCCCCEEEEECCCCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHH
DFAARMGGGTVRLDSARVYKTSSDLIVKENVRLDLRGSTVVGRFDSGNHSVFRMRSRSEL
HHHHHCCCCEEEECCCEEEECCCCEEEECCEEEEECCCEEEEEECCCCCEEEEECCHHHH
FGGKVKVVSTGQPGLQAAAHCGVSAGCRLGDPNEVARPDPDNDPHSFAIYDLLIQSDKWV
CCCEEEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCC
PDGAGGHVGAPAIQIIGCSHYRIENITIPSSDRMYGAVHVDWGHIGPISTVDRAQAQTMN
CCCCCCCCCCCEEEEEECCCEEEEEEECCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHH
KRAYLDGMAYVIPSRHGIIRRIRAGALSAPSTGVDRGSFCVRISGAHSITVADCYAESVT
HHHHHCCEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCEEEEEEHHHHHHH
YQAYAHEVGDLGAEFVLPQDRDLLGKRIRFENCRIGGSATGQVFELRGYADNIARAITDG
HHHHHHHHHCCCCEEECCCCHHHHHHHEEECCEECCCCCCCEEEEECCCHHHHHHHHHHH
YENMVDPLVECDVVFDGVTGTGQGAGARNAGGRVLQIRGGVIRNADLSRFRDGILVDERA
HHHHHHHHHEEEEEEECCCCCCCCCCCCCCCCEEEEECCCEEECCCHHHHHCCEEEECCC
SDVRIENVACYDCEHEGILVHHPVYPPEDIVIENAHTYGNGRNAAFRDAAGIHLGTSRRC
CCEEEEEEEEEECCCCCEEEECCCCCCCCEEEECCEECCCCCCCCCCCCCCEEECCCCCE
RIIRGRFGLRGLARDGTQEFAFRIGSGAVAAVVEEPLIHSRGKNGKISFIQRGDLTRL
EEEECCCCCCCCCCCCCHHHHEEECCCCEEEHHHHHHHHCCCCCCCEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA